# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000557 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000809 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000830 1yqgA 263 0.001165 1yb4A 295 0.001370 2cvzA 289 0.001581 a.100.1.1,c.2.1.6 130890,130891 2h78A 302 0.001584 2rcyA 262 0.002599 2pgd 482 0.002746 2p4qA 497 0.002799 2pgdA 482 0.003596 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.004108 2f1kA 279 0.005344 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.005821 3c24A 286 0.006158 2dpoA 319 0.006449 1mv8A 436 0.008154 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2o3jA 481 0.008684 2g5cA 281 0.01041 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 0.01048 a.100.1.2,c.2.1.6 85946,85947 1evyA 366 0.01206 a.100.1.6,c.2.1.6 18811,30215 2i76A 276 0.01216 1qmgA 524 0.01233 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 0.01247 1bg6A 359 0.01293 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.01397 1z82A 335 0.01620 1ks9A 291 0.01768 a.100.1.7,c.2.1.6 68857,68858 1bg6 359 0.02127 1i36A 264 0.02312 a.100.1.8,c.2.1.6 71108,71109 1yrlA 491 0.02357 1txgA 335 0.02404 a.100.1.6,c.2.1.6 112775,112776 1f0yA 302 0.02924 a.100.1.3,c.2.1.6 18793,30197 2qytA 317 0.03545 1dliA 402 0.04238 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.04815 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zejA 293 0.06861 1zcjA 463 0.08192 1jayA 212 0.1231 c.2.1.6 66478 1qv9A 283 0.3535 c.127.1.1 96356 1obbA 480 0.6879 c.2.1.5,d.162.1.2 86760,86761 1vjtA 483 0.7488 c.2.1.5,d.162.1.2 100833,100834 1guzA 310 1.107 c.2.1.5,d.162.1.1 65586,65587 2axqA 467 1.166 1s6yA 450 1.195 c.2.1.5,d.162.1.2 105314,105315 1lldA 319 2.328 c.2.1.5,d.162.1.1 30177,42144 1t2dA 322 2.337 c.2.1.5,d.162.1.1 99084,99085 1hyhA 309 2.379 c.2.1.5,d.162.1.1 30150,42117 1pzgA 331 2.457 c.2.1.5,d.162.1.1 95425,95426 2b0jA 358 2.586 a.100.1.11,c.2.1.6 127639,127640 1gdhA 320 3.014 c.2.1.4,c.23.12.1 30095,31355 1f06A 320 3.298 c.2.1.3,d.81.1.3 59556,59557 1ez4A 318 3.330 c.2.1.5,d.162.1.1 64917,64918 2nacA 393 3.428 c.2.1.4,c.23.12.1 30088,31348 2v7pA 310 3.525 1ygyA 529 3.888 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2j6iA 364 3.947 2fssA 365 3.963 2ewdA 317 3.968 1a5zA 319 4.289 c.2.1.5,d.162.1.1 30181,42148 2nvwA 479 4.333 c.2.1.3,d.81.1.5 138665,138666 1li4A 432 4.402 c.2.1.4,c.23.12.3 84616,84617 2dbqA 334 4.603 1j4aA 333 4.686 c.2.1.4,c.23.12.1 71502,71503 1lssA 140 4.725 c.2.1.9 74246 1mx3A 347 4.791 c.2.1.4,c.23.12.1 79638,79639 1gpjA 404 4.960 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x7dA 350 5.092 c.2.1.13 114927 6ldhA 329 5.151 c.2.1.5,d.162.1.1 30161,42128 1omoA 322 5.219 c.2.1.13 104017 1wwkA 307 5.284 2ho3A 325 5.705 2i6tA 303 5.775 2pi1A 334 5.831 1up7A 417 5.886 c.2.1.5,d.162.1.2 113374,113375 1xdwA 331 6.194 1dxy 333 6.377 1u8xX 472 6.513 c.2.1.5,d.162.1.2 107741,107742 1dxyA 333 6.603 c.2.1.4,c.23.12.1 30094,31354 1h6dA 433 6.747 c.2.1.3,d.81.1.5 65656,65657 1uxjA 309 6.758 c.2.1.5,d.162.1.1 108112,108113 2gcgA 330 6.780 1v8bA 479 6.808 c.2.1.4,c.23.12.3 113564,113565 1drwA 273 7.114 c.2.1.3,d.81.1.3 30057,39972 2p2sA 336 7.483 3bioA 304 7.497 1xeaA 323 7.570 c.2.1.3,d.81.1.5 109572,109573 3ceaA 346 7.670 2eggA 297 8.083 1tltA 319 8.236 c.2.1.3,d.81.1.5 107135,107136 2o4cA 380 8.273 2o4uX 334 8.398 1ff9A 450 8.828 c.2.1.3,d.81.1.2 30039,39954 2g76A 335 9.052 1p77A 272 9.647 c.2.1.7,c.58.1.5 94214,94215 1sc6A 404 9.920 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2hjsA 340 10.35 c.2.1.3,d.81.1.1 136547,136548 2cukA 311 10.45 2glxA 332 10.67 1pjcA 361 10.96 c.2.1.4,c.23.12.2 30101,31361 1rydA 387 10.98 c.2.1.3,d.81.1.5 118801,118802 2ixaA 444 11.03 1drw 273 11.16 2dc1A 236 11.16 2q4eA 362 11.99 2vhxA 377 12.93 1nvmB 312 13.14 c.2.1.3,d.81.1.1 86251,86252 2nloA 302 13.74 3c1aA 315 13.96 2g17A 337 14.12 c.2.1.3,d.81.1.1 134512,134513 1lsuA 147 14.26 c.2.1.9 74250 2r6jA 318 14.47 2hk9A 275 14.64 2d5cA 263 14.90 1zh8A 340 15.24 c.2.1.3,d.81.1.5 125077,125078 2d0iA 333 15.24 2vojA 371 17.06 2gz1A 366 17.17 c.2.1.3,d.81.1.1 135887,135888 2r00A 336 17.20 1lehA 364 17.39 c.2.1.7,c.58.1.1 30268,33916 1vknA 351 17.80 c.2.1.3,d.81.1.1 108676,108677 2g1uA 155 18.01 1y81A 138 18.75 c.2.1.8 122731 2ejwA 332 18.89 1npyA 271 18.96 c.2.1.7,c.58.1.5 85995,85996 2eklA 313 18.99 1qp8A 303 19.46 c.2.1.4,c.23.12.1 30092,31352 1j5pA 253 19.78 d.81.1.3,c.2.1.3 71577,83092 1id1A 153 20.36 c.2.1.9 62286 2aefA 234 20.37 1nytA 271 22.07 c.2.1.7,c.58.1.5 86417,86418 1nvtA 287 22.15 c.2.1.7,c.58.1.5 86270,86271 2o7sA 523 22.31 1x13A 401 23.62 2hmvA 144 23.74 c.2.1.9 136615 1xgkA 352 23.75 c.2.1.2 115286 3c85A 183 24.92 2ph5A 480 25.80 2cmdA 312 26.79 c.2.1.5,d.162.1.1 30135,42102 1o6zA 303 26.81 c.2.1.5,d.162.1.1 81107,81108 2b69A 343 26.88 c.2.1.2 127974 2nqtA 352 27.69 2fk8A 318 28.08 c.66.1.18 133648 1yovA 537 28.33 c.111.1.2 123785 1hdoA 206 29.03 c.2.1.2 60965 2cmd 312 30.59 1sb8A 352 31.30 c.2.1.2 105410 2d59A 144 31.51 c.2.1.8 131266 1y1pA 342 32.56 c.2.1.2 122550 2q49A 359 32.97 c.2.1.3,d.81.1.1 139831,139832 1mldA 314 33.85 c.2.1.5,d.162.1.1 30122,42089 2gn4A 344 33.94 2pzmA 330 36.27 1ys4A 354 36.66 1lc0A 294 38.51 c.2.1.3,d.81.1.4 73823,73824 1oc2A 348 39.70 c.2.1.2 92765 1l7dA 384 40.17 c.2.1.4,c.23.12.2 77774,77775 1lluA 342 41.08 b.35.1.2,c.2.1.1 91064,91065 1yqdA 366 41.28 1vi2A 300 41.88 c.2.1.7,c.58.1.5 100726,100727 2c29D 337 42.84 1q7gA 359 44.01 c.2.1.3,d.81.1.2 96038,96039 2bllA 345 44.23 c.2.1.2 128733 1iukA 140 44.47 c.2.1.8 83712 1i2cA 404 44.85 c.2.1.2 83666 1luaA 287 45.04 c.2.1.7,c.58.1.4 78216,78217 2exxA 306 45.29 1orrA 347 46.11 c.2.1.2 93460 2yqzA 263 46.56 4uagA 437 46.97 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1ebfA 358 49.57 c.2.1.3,d.81.1.2 30033,39948 2gptA 523 51.07 1fl2A 310 51.59 c.3.1.5,c.3.1.5 59869,59870 2gasA 307 52.16 3cc8A 230 52.96 1rkxA 357 53.49 c.2.1.2 97631 2z1mA 345 55.15 2q1sA 377 55.56 2a35A 215 57.05 c.2.1.2 126072 1z45A 699 57.58 b.30.5.4,c.2.1.2 124427,124428 1uufA 369 57.87 b.35.1.2,c.2.1.1 100006,100007 1y7tA 327 59.14 c.2.1.5,d.162.1.1 122718,122719 1b7gO 340 60.95 c.2.1.3,d.81.1.1 29992,39907 1z7bA 358 62.05 c.2.1.2 124599 1l1eA 287 62.69 c.66.1.18 73454 1c1dA 355 63.67 c.2.1.7,c.58.1.1 30270,33918 2cf5A 357 63.67 2dm6A 333 66.10 b.35.1.2,c.2.1.1 131567,131568 2p5yA 311 66.65 1t2aA 375 67.72 c.2.1.2 99078 3c8mA 331 67.81 1xu9A 286 68.07 c.2.1.2 116052 1xg5A 279 69.98 c.2.1.2 115277 1bdmA 327 70.11 c.2.1.5,d.162.1.1 30137,42104 1xxlA 239 70.73 c.66.1.41 116203 1nhsA 447 71.39 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2blnA 305 71.85 b.46.1.1,c.65.1.1 128734,128735 2czcA 334 72.13 d.81.1.1 131044 2gqwA 408 72.91 1yb2A 275 73.26 c.66.1.13 122868 1ve3A 227 73.43 c.66.1.43 120010 1wvgA 359 75.00 c.2.1.2 121339 1r6dA 337 75.61 c.2.1.2 97148 1y8qA 346 78.29 1nhpA 447 79.32 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2p4hX 322 80.06 1yxmA 303 80.18 c.2.1.2 124192 1kpgA 287 80.18 c.66.1.18 68735 2ozpA 345 81.77 2ex4A 241 86.68 c.66.1.42 132516 1vl5A 260 86.83 c.66.1.41 108720 1ri5A 298 88.71 c.66.1.34 97502