# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000572 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000897 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000919 1yqgA 263 0.001241 1yb4A 295 0.001432 2h78A 302 0.001628 2cvzA 289 0.001640 a.100.1.1,c.2.1.6 130890,130891 2p4qA 497 0.002691 2rcyA 262 0.002978 2pgd 482 0.003028 2pgdA 482 0.003806 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.004567 2f1kA 279 0.006226 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.006241 2dpoA 319 0.006865 3c24A 286 0.006934 1mv8A 436 0.008743 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2o3jA 481 0.009472 1np3A 338 0.01115 a.100.1.2,c.2.1.6 85946,85947 1evyA 366 0.01218 a.100.1.6,c.2.1.6 18811,30215 2g5cA 281 0.01244 a.100.1.12,c.2.1.6 134646,134647 1qmgA 524 0.01352 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 0.01388 2i76A 276 0.01392 1bg6A 359 0.01402 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.01586 1z82A 335 0.01731 1ks9A 291 0.01821 a.100.1.7,c.2.1.6 68857,68858 1i36A 264 0.02319 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 0.02346 1txgA 335 0.02454 a.100.1.6,c.2.1.6 112775,112776 1yrlA 491 0.02520 1f0yA 302 0.03335 a.100.1.3,c.2.1.6 18793,30197 2qytA 317 0.03492 1dliA 402 0.04686 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.05214 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zejA 293 0.06428 1zcjA 463 0.08569 1jayA 212 0.1300 c.2.1.6 66478 1qv9A 283 0.3692 c.127.1.1 96356 1vjtA 483 0.6689 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 0.6767 c.2.1.5,d.162.1.2 86760,86761 1guzA 310 1.074 c.2.1.5,d.162.1.1 65586,65587 2axqA 467 1.074 1s6yA 450 1.169 c.2.1.5,d.162.1.2 105314,105315 1t2dA 322 1.949 c.2.1.5,d.162.1.1 99084,99085 1lldA 319 2.038 c.2.1.5,d.162.1.1 30177,42144 1pzgA 331 2.110 c.2.1.5,d.162.1.1 95425,95426 1hyhA 309 2.139 c.2.1.5,d.162.1.1 30150,42117 2b0jA 358 2.441 a.100.1.11,c.2.1.6 127639,127640 1gdhA 320 3.015 c.2.1.4,c.23.12.1 30095,31355 1ez4A 318 3.239 c.2.1.5,d.162.1.1 64917,64918 1f06A 320 3.257 c.2.1.3,d.81.1.3 59556,59557 2v7pA 310 3.266 1ygyA 529 3.469 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2nacA 393 3.615 c.2.1.4,c.23.12.1 30088,31348 2j6iA 364 3.639 2fssA 365 3.691 2nvwA 479 3.702 c.2.1.3,d.81.1.5 138665,138666 2ewdA 317 3.809 1a5zA 319 3.831 c.2.1.5,d.162.1.1 30181,42148 1li4A 432 4.257 c.2.1.4,c.23.12.3 84616,84617 2dbqA 334 4.296 1omoA 322 4.299 c.2.1.13 104017 1j4aA 333 4.450 c.2.1.4,c.23.12.1 71502,71503 2ho3A 325 4.555 1mx3A 347 4.569 c.2.1.4,c.23.12.1 79638,79639 1x7dA 350 4.720 c.2.1.13 114927 6ldhA 329 4.743 c.2.1.5,d.162.1.1 30161,42128 2i6tA 303 4.866 1gpjA 404 4.906 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1lssA 140 4.940 c.2.1.9 74246 1wwkA 307 5.141 1up7A 417 5.406 c.2.1.5,d.162.1.2 113374,113375 2pi1A 334 5.419 1uxjA 309 5.762 c.2.1.5,d.162.1.1 108112,108113 2gcgA 330 5.837 1h6dA 433 6.139 c.2.1.3,d.81.1.5 65656,65657 1v8bA 479 6.154 c.2.1.4,c.23.12.3 113564,113565 2o4uX 334 6.465 1xdwA 331 6.466 1xeaA 323 6.543 c.2.1.3,d.81.1.5 109572,109573 1dxyA 333 6.547 c.2.1.4,c.23.12.1 30094,31354 1dxy 333 6.706 2p2sA 336 6.781 3ceaA 346 6.995 1u8xX 472 7.061 c.2.1.5,d.162.1.2 107741,107742 3bioA 304 7.094 1tltA 319 7.181 c.2.1.3,d.81.1.5 107135,107136 1drwA 273 7.220 c.2.1.3,d.81.1.3 30057,39972 2o4cA 380 7.369 2eggA 297 7.406 1ff9A 450 7.957 c.2.1.3,d.81.1.2 30039,39954 2g76A 335 8.226 1p77A 272 8.323 c.2.1.7,c.58.1.5 94214,94215 2ixaA 444 8.545 2glxA 332 8.784 1rydA 387 9.324 c.2.1.3,d.81.1.5 118801,118802 1pjcA 361 9.365 c.2.1.4,c.23.12.2 30101,31361 2hjsA 340 9.829 c.2.1.3,d.81.1.1 136547,136548 2q4eA 362 9.861 1drw 273 9.928 2cukA 311 9.96 1sc6A 404 10.43 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2dc1A 236 10.70 2hk9A 275 10.75 2d5cA 263 11.04 3c1aA 315 11.10 1nvmB 312 11.39 c.2.1.3,d.81.1.1 86251,86252 2vhxA 377 12.07 2nloA 302 12.33 1zh8A 340 13.00 c.2.1.3,d.81.1.5 125077,125078 2r6jA 318 14.17 2d0iA 333 14.57 2g17A 337 15.08 c.2.1.3,d.81.1.1 134512,134513 1lehA 364 15.36 c.2.1.7,c.58.1.1 30268,33916 1lsuA 147 15.42 c.2.1.9 74250 1vknA 351 15.53 c.2.1.3,d.81.1.1 108676,108677 2vojA 371 15.62 1npyA 271 15.72 c.2.1.7,c.58.1.5 85995,85996 2ejwA 332 15.90 2gz1A 366 16.23 c.2.1.3,d.81.1.1 135887,135888 2r00A 336 16.55 1j5pA 253 16.77 d.81.1.3,c.2.1.3 71577,83092 2eklA 313 18.71 1y81A 138 18.96 c.2.1.8 122731 1qp8A 303 19.15 c.2.1.4,c.23.12.1 30092,31352 1nvtA 287 19.87 c.2.1.7,c.58.1.5 86270,86271 2g1uA 155 20.44 2o7sA 523 20.46 1nytA 271 20.67 c.2.1.7,c.58.1.5 86417,86418 1o6zA 303 21.02 c.2.1.5,d.162.1.1 81107,81108 2aefA 234 21.32 1id1A 153 21.51 c.2.1.9 62286 1xgkA 352 21.63 c.2.1.2 115286 1x13A 401 23.67 2ph5A 480 24.05 2nqtA 352 24.20 2hmvA 144 24.26 c.2.1.9 136615 2cmdA 312 25.31 c.2.1.5,d.162.1.1 30135,42102 2cmd 312 25.68 1hdoA 206 25.76 c.2.1.2 60965 3c85A 183 26.63 2b69A 343 27.07 c.2.1.2 127974 1yovA 537 27.98 c.111.1.2 123785 1mldA 314 28.55 c.2.1.5,d.162.1.1 30122,42089 1y1pA 342 29.76 c.2.1.2 122550 1sb8A 352 30.66 c.2.1.2 105410 2gn4A 344 31.63 1lc0A 294 31.96 c.2.1.3,d.81.1.4 73823,73824 2fk8A 318 32.96 c.66.1.18 133648 2pzmA 330 33.59 2q49A 359 34.28 c.2.1.3,d.81.1.1 139831,139832 1ys4A 354 34.72 2d59A 144 35.88 c.2.1.8 131266 1oc2A 348 36.51 c.2.1.2 92765 1l7dA 384 36.69 c.2.1.4,c.23.12.2 77774,77775 2bllA 345 38.41 c.2.1.2 128733 1ebfA 358 38.79 c.2.1.3,d.81.1.2 30033,39948 2exxA 306 40.42 1luaA 287 40.96 c.2.1.7,c.58.1.4 78216,78217 1q7gA 359 41.78 c.2.1.3,d.81.1.2 96038,96039 1orrA 347 41.98 c.2.1.2 93460 1yqdA 366 42.13 1i2cA 404 42.53 c.2.1.2 83666 1vi2A 300 42.64 c.2.1.7,c.58.1.5 100726,100727 4uagA 437 42.87 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1rkxA 357 44.95 c.2.1.2 97631 2gptA 523 44.98 2c29D 337 45.39 1lluA 342 46.47 b.35.1.2,c.2.1.1 91064,91065 2yqzA 263 46.57 2z1mA 345 47.84 1z45A 699 47.90 b.30.5.4,c.2.1.2 124427,124428 1iukA 140 48.62 c.2.1.8 83712 2gasA 307 49.25 3cc8A 230 50.89 1c1dA 355 52.00 c.2.1.7,c.58.1.1 30270,33918 2a35A 215 52.53 c.2.1.2 126072 1y7tA 327 52.99 c.2.1.5,d.162.1.1 122718,122719 1fl2A 310 54.31 c.3.1.5,c.3.1.5 59869,59870 1wvgA 359 55.04 c.2.1.2 121339 1b7gO 340 55.33 c.2.1.3,d.81.1.1 29992,39907 2q1sA 377 55.36 3c8mA 331 56.35 1z7bA 358 57.56 c.2.1.2 124599 1bdmA 327 60.27 c.2.1.5,d.162.1.1 30137,42104 2cf5A 357 60.89 1t2aA 375 61.92 c.2.1.2 99078 2p5yA 311 61.94 2gqwA 408 63.54 1uufA 369 63.65 b.35.1.2,c.2.1.1 100006,100007 2czcA 334 64.44 d.81.1.1 131044 2dm6A 333 64.75 b.35.1.2,c.2.1.1 131567,131568 1nhsA 447 66.45 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1hyeA 313 67.43 c.2.1.5,d.162.1.1 61400,61401 1l1eA 287 67.74 c.66.1.18 73454 2blnA 305 67.79 b.46.1.1,c.65.1.1 128734,128735 1xg5A 279 68.15 c.2.1.2 115277 2ozpA 345 72.69 1ve3A 227 72.89 c.66.1.43 120010 1y8qA 346 73.74 1xxlA 239 73.98 c.66.1.41 116203 1r6dA 337 75.16 c.2.1.2 97148 1xu9A 286 76.01 c.2.1.2 116052 2p4hX 322 76.41 1nhpA 447 77.09 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1yxmA 303 78.05 c.2.1.2 124192 1yb2A 275 80.72 c.66.1.13 122868 1vl5A 260 83.85 c.66.1.41 108720 2ex4A 241 85.35 c.66.1.42 132516 1t4bA 367 85.50 c.2.1.3,d.81.1.1 106406,106407