# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000419 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000618 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000627 1yqgA 263 0.000787 1yb4A 295 0.000997 2h78A 302 0.001173 2cvzA 289 0.001219 a.100.1.1,c.2.1.6 130890,130891 2p4qA 497 0.001846 2rcyA 262 0.001990 2pgd 482 0.002108 2pgdA 482 0.002595 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.003230 2f1kA 279 0.004124 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.004356 3c24A 286 0.004970 2dpoA 319 0.005264 1mv8A 436 0.006592 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2o3jA 481 0.006898 1np3A 338 0.007991 a.100.1.2,c.2.1.6 85946,85947 1evyA 366 0.008756 a.100.1.6,c.2.1.6 18811,30215 2g5cA 281 0.009124 a.100.1.12,c.2.1.6 134646,134647 2i76A 276 0.01000 1qmgA 524 0.01041 a.100.1.2,c.2.1.6 18785,30182 1bg6A 359 0.01068 a.100.1.5,c.2.1.6 18810,30214 2pv7A 298 0.01085 1x0vA 354 0.01210 1z82A 335 0.01223 1ks9A 291 0.01381 a.100.1.7,c.2.1.6 68857,68858 1i36A 264 0.01689 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 0.01732 1yrlA 491 0.01835 1txgA 335 0.01861 a.100.1.6,c.2.1.6 112775,112776 1f0yA 302 0.02485 a.100.1.3,c.2.1.6 18793,30197 2qytA 317 0.02772 1dliA 402 0.03211 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.03436 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zejA 293 0.05320 1zcjA 463 0.06032 1jayA 212 0.1062 c.2.1.6 66478 1qv9A 283 0.2815 c.127.1.1 96356 1obbA 480 0.5706 c.2.1.5,d.162.1.2 86760,86761 1vjtA 483 0.5850 c.2.1.5,d.162.1.2 100833,100834 2axqA 467 0.9309 1guzA 310 0.9521 c.2.1.5,d.162.1.1 65586,65587 1s6yA 450 1.033 c.2.1.5,d.162.1.2 105314,105315 1pzgA 331 1.770 c.2.1.5,d.162.1.1 95425,95426 1t2dA 322 1.800 c.2.1.5,d.162.1.1 99084,99085 1lldA 319 1.851 c.2.1.5,d.162.1.1 30177,42144 1hyhA 309 1.864 c.2.1.5,d.162.1.1 30150,42117 2b0jA 358 2.322 a.100.1.11,c.2.1.6 127639,127640 1gdhA 320 2.645 c.2.1.4,c.23.12.1 30095,31355 1ez4A 318 2.756 c.2.1.5,d.162.1.1 64917,64918 1f06A 320 2.819 c.2.1.3,d.81.1.3 59556,59557 2v7pA 310 2.995 2nacA 393 3.001 c.2.1.4,c.23.12.1 30088,31348 2fssA 365 3.019 1ygyA 529 3.118 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2j6iA 364 3.141 1a5zA 319 3.285 c.2.1.5,d.162.1.1 30181,42148 2dbqA 334 3.544 1li4A 432 3.674 c.2.1.4,c.23.12.3 84616,84617 2nvwA 479 3.805 c.2.1.3,d.81.1.5 138665,138666 1mx3A 347 3.849 c.2.1.4,c.23.12.1 79638,79639 1omoA 322 3.924 c.2.1.13 104017 1j4aA 333 3.984 c.2.1.4,c.23.12.1 71502,71503 2ho3A 325 4.079 1x7dA 350 4.133 c.2.1.13 114927 1wwkA 307 4.277 2i6tA 303 4.308 1gpjA 404 4.443 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1lssA 140 4.451 c.2.1.9 74246 1uxjA 309 4.494 c.2.1.5,d.162.1.1 108112,108113 6ldhA 329 4.605 c.2.1.5,d.162.1.1 30161,42128 2pi1A 334 4.650 2ewdA 317 4.880 1up7A 417 5.028 c.2.1.5,d.162.1.2 113374,113375 2gcgA 330 5.106 1dxyA 333 5.364 c.2.1.4,c.23.12.1 30094,31354 1dxy 333 5.439 1xdwA 331 5.528 2o4uX 334 5.810 1v8bA 479 5.862 c.2.1.4,c.23.12.3 113564,113565 1h6dA 433 6.025 c.2.1.3,d.81.1.5 65656,65657 2p2sA 336 6.032 1u8xX 472 6.070 c.2.1.5,d.162.1.2 107741,107742 3bioA 304 6.238 1ff9A 450 6.319 c.2.1.3,d.81.1.2 30039,39954 1xeaA 323 6.329 c.2.1.3,d.81.1.5 109572,109573 2eggA 297 6.377 3ceaA 346 6.558 2o4cA 380 6.905 1tltA 319 6.924 c.2.1.3,d.81.1.5 107135,107136 1drwA 273 7.395 c.2.1.3,d.81.1.3 30057,39972 2g76A 335 7.620 1p77A 272 7.832 c.2.1.7,c.58.1.5 94214,94215 2ixaA 444 8.371 2dc1A 236 8.546 2glxA 332 8.858 2cukA 311 8.920 1rydA 387 9.129 c.2.1.3,d.81.1.5 118801,118802 1pjcA 361 9.241 c.2.1.4,c.23.12.2 30101,31361 2hjsA 340 9.689 c.2.1.3,d.81.1.1 136547,136548 1drw 273 9.853 3c1aA 315 9.96 2q4eA 362 10.23 1sc6A 404 10.52 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2nloA 302 10.61 1nvmB 312 10.83 c.2.1.3,d.81.1.1 86251,86252 2d5cA 263 11.47 2hk9A 275 11.71 2vhxA 377 11.96 2d0iA 333 12.82 2g17A 337 12.84 c.2.1.3,d.81.1.1 134512,134513 2r6jA 318 12.91 1zh8A 340 13.05 c.2.1.3,d.81.1.5 125077,125078 1vknA 351 14.12 c.2.1.3,d.81.1.1 108676,108677 2vojA 371 14.19 1lsuA 147 14.34 c.2.1.9 74250 1lehA 364 14.37 c.2.1.7,c.58.1.1 30268,33916 2ejwA 332 14.49 1npyA 271 14.86 c.2.1.7,c.58.1.5 85995,85996 2gz1A 366 15.30 c.2.1.3,d.81.1.1 135887,135888 2r00A 336 15.35 1j5pA 253 16.29 d.81.1.3,c.2.1.3 71577,83092 1qp8A 303 16.43 c.2.1.4,c.23.12.1 30092,31352 2eklA 313 16.68 1y81A 138 17.25 c.2.1.8 122731 1nytA 271 17.41 c.2.1.7,c.58.1.5 86417,86418 2aefA 234 18.69 1nvtA 287 18.76 c.2.1.7,c.58.1.5 86270,86271 1id1A 153 19.12 c.2.1.9 62286 2o7sA 523 19.68 2g1uA 155 19.89 1xgkA 352 20.49 c.2.1.2 115286 2cmdA 312 21.72 c.2.1.5,d.162.1.1 30135,42102 1o6zA 303 22.29 c.2.1.5,d.162.1.1 81107,81108 1x13A 401 22.47 2hmvA 144 23.08 c.2.1.9 136615 2cmd 312 23.10 2nqtA 352 23.37 2ph5A 480 24.29 1mldA 314 25.31 c.2.1.5,d.162.1.1 30122,42089 1yovA 537 25.63 c.111.1.2 123785 1sb8A 352 25.74 c.2.1.2 105410 1hdoA 206 25.93 c.2.1.2 60965 3c85A 183 26.38 2b69A 343 28.08 c.2.1.2 127974 2gn4A 344 28.42 2q49A 359 28.91 c.2.1.3,d.81.1.1 139831,139832 2pzmA 330 29.30 1y1pA 342 29.66 c.2.1.2 122550 2fk8A 318 29.87 c.66.1.18 133648 1lc0A 294 30.44 c.2.1.3,d.81.1.4 73823,73824 1ys4A 354 31.38 1ebfA 358 33.29 c.2.1.3,d.81.1.2 30033,39948 1l7dA 384 34.62 c.2.1.4,c.23.12.2 77774,77775 1vi2A 300 35.73 c.2.1.7,c.58.1.5 100726,100727 1oc2A 348 35.83 c.2.1.2 92765 1luaA 287 35.85 c.2.1.7,c.58.1.4 78216,78217 1yqdA 366 37.15 2d59A 144 38.87 c.2.1.8 131266 1i2cA 404 39.19 c.2.1.2 83666 2exxA 306 39.83 2c29D 337 39.96 1q7gA 359 40.65 c.2.1.3,d.81.1.2 96038,96039 4uagA 437 41.07 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1orrA 347 41.21 c.2.1.2 93460 2bllA 345 42.09 c.2.1.2 128733 2gptA 523 43.23 2gasA 307 43.64 1lluA 342 44.57 b.35.1.2,c.2.1.1 91064,91065 2a35A 215 45.49 c.2.1.2 126072 2z1mA 345 45.63 2yqzA 263 46.88 2q1sA 377 47.26 3cc8A 230 47.58 1fl2A 310 48.54 c.3.1.5,c.3.1.5 59869,59870 1z45A 699 50.20 b.30.5.4,c.2.1.2 124427,124428 1rkxA 357 51.14 c.2.1.2 97631 2cf5A 357 51.31 1iukA 140 51.42 c.2.1.8 83712 3c8mA 331 53.04 1y7tA 327 53.33 c.2.1.5,d.162.1.1 122718,122719 1c1dA 355 55.85 c.2.1.7,c.58.1.1 30270,33918 1bdmA 327 56.20 c.2.1.5,d.162.1.1 30137,42104 1b7gO 340 58.42 c.2.1.3,d.81.1.1 29992,39907 1l1eA 287 60.36 c.66.1.18 73454 1z7bA 358 61.77 c.2.1.2 124599 1uufA 369 62.57 b.35.1.2,c.2.1.1 100006,100007 1xu9A 286 62.85 c.2.1.2 116052 2p5yA 311 63.15 2dm6A 333 63.42 b.35.1.2,c.2.1.1 131567,131568 1xg5A 279 63.74 c.2.1.2 115277 1y8qA 346 64.27 1r6dA 337 64.34 c.2.1.2 97148 1t2aA 375 66.35 c.2.1.2 99078 2czcA 334 67.04 d.81.1.1 131044 2gqwA 408 67.36 1ve3A 227 68.10 c.66.1.43 120010 1xxlA 239 68.95 c.66.1.41 116203 1yxmA 303 70.73 c.2.1.2 124192 2blnA 305 71.56 b.46.1.1,c.65.1.1 128734,128735 1yb2A 275 72.18 c.66.1.13 122868 1wvgA 359 72.57 c.2.1.2 121339 1nhsA 447 73.24 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1nhpA 447 74.38 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2ozpA 345 74.77 1hyeA 313 77.00 c.2.1.5,d.162.1.1 61400,61401 1xq6A 253 78.45 c.2.1.2 115829 1wmaA 276 80.60 c.2.1.2 121042 1vl5A 260 81.84 c.66.1.41 108720 2p4hX 322 84.41 1xvaA 292 87.22 c.66.1.5 34183 2ex4A 241 89.60 c.66.1.42 132516 2gdzA 267 89.72 c.2.1.2 135043 2ggsA 273 89.79