# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ahrA 259 0.005680 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.006118 1vpdA 299 0.006149 a.100.1.1,c.2.1.6 113951,113952 1yqgA 263 0.008113 1yb4A 295 0.01060 2pgd 482 0.01061 2p4qA 497 0.01067 2h78A 302 0.01475 2cvzA 289 0.01504 a.100.1.1,c.2.1.6 130890,130891 2graA 277 0.01540 2pgdA 482 0.01609 a.100.1.1,c.2.1.6 18778,30190 2rcyA 262 0.01760 2f1kA 279 0.03246 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.03489 1evyA 366 0.03689 a.100.1.6,c.2.1.6 18811,30215 3c24A 286 0.04166 2dpoA 319 0.04677 2i76A 276 0.04785 2o3jA 481 0.05505 1x0vA 354 0.05861 2pv7A 298 0.05868 1np3A 338 0.06188 a.100.1.2,c.2.1.6 85946,85947 1qmgA 524 0.06420 a.100.1.2,c.2.1.6 18785,30182 1mv8A 436 0.06835 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1bg6A 359 0.07154 a.100.1.5,c.2.1.6 18810,30214 2g5cA 281 0.08078 a.100.1.12,c.2.1.6 134646,134647 1z82A 335 0.08394 1yrlA 491 0.08763 1f0yA 302 0.09257 a.100.1.3,c.2.1.6 18793,30197 1bg6 359 0.09283 1ks9A 291 0.1068 a.100.1.7,c.2.1.6 68857,68858 1i36A 264 0.1206 a.100.1.8,c.2.1.6 71108,71109 1dljA 402 0.1314 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1txgA 335 0.1339 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 0.1374 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2qytA 317 0.1655 1zejA 293 0.2229 1zcjA 463 0.2438 1jayA 212 0.4575 c.2.1.6 66478 2axqA 467 1.307 1qv9A 283 2.895 c.127.1.1 96356 1obbA 480 3.563 c.2.1.5,d.162.1.2 86760,86761 1pzgA 331 3.565 c.2.1.5,d.162.1.1 95425,95426 1vjtA 483 4.084 c.2.1.5,d.162.1.2 100833,100834 1li4A 432 4.307 c.2.1.4,c.23.12.3 84616,84617 2p2sA 336 4.319 1x7dA 350 4.319 c.2.1.13 114927 1ygyA 529 4.429 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1t2dA 322 4.550 c.2.1.5,d.162.1.1 99084,99085 2o4uX 334 4.585 1mx3A 347 4.647 c.2.1.4,c.23.12.1 79638,79639 2nvwA 479 4.796 c.2.1.3,d.81.1.5 138665,138666 1guzA 310 4.841 c.2.1.5,d.162.1.1 65586,65587 1wwkA 307 4.877 2fssA 365 4.933 1f06A 320 4.951 c.2.1.3,d.81.1.3 59556,59557 2nacA 393 5.002 c.2.1.4,c.23.12.1 30088,31348 1h6dA 433 5.067 c.2.1.3,d.81.1.5 65656,65657 1sc6A 404 5.142 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2b0jA 358 5.181 a.100.1.11,c.2.1.6 127639,127640 1gdhA 320 5.199 c.2.1.4,c.23.12.1 30095,31355 2q4eA 362 5.314 1omoA 322 5.376 c.2.1.13 104017 1hyhA 309 5.385 c.2.1.5,d.162.1.1 30150,42117 1xeaA 323 5.525 c.2.1.3,d.81.1.5 109572,109573 2ewdA 317 5.612 2j6iA 364 5.775 1drw 273 5.805 2g76A 335 5.959 2dbqA 334 6.169 2glxA 332 6.357 2gcgA 330 6.413 3ceaA 346 6.524 1v8bA 479 6.649 c.2.1.4,c.23.12.3 113564,113565 2dc1A 236 6.988 1rydA 387 7.233 c.2.1.3,d.81.1.5 118801,118802 1xdwA 331 7.273 2eklA 313 7.351 1tltA 319 7.497 c.2.1.3,d.81.1.5 107135,107136 1pjcA 361 7.500 c.2.1.4,c.23.12.2 30101,31361 2pi1A 334 7.517 2ho3A 325 7.523 1j4aA 333 7.928 c.2.1.4,c.23.12.1 71502,71503 1lldA 319 7.978 c.2.1.5,d.162.1.1 30177,42144 1ez4A 318 8.275 c.2.1.5,d.162.1.1 64917,64918 1uxjA 309 8.342 c.2.1.5,d.162.1.1 108112,108113 1ff9A 450 8.397 c.2.1.3,d.81.1.2 30039,39954 1dxy 333 8.406 6ldhA 329 8.432 c.2.1.5,d.162.1.1 30161,42128 2v7pA 310 8.873 1u8xX 472 9.533 c.2.1.5,d.162.1.2 107741,107742 1gpjA 404 9.787 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2d0iA 333 10.22 2cukA 311 10.45 3c1aA 315 10.54 1drwA 273 10.85 c.2.1.3,d.81.1.3 30057,39972 2eggA 297 11.22 3bioA 304 11.42 1zh8A 340 11.44 c.2.1.3,d.81.1.5 125077,125078 2i6tA 303 11.96 1dxyA 333 13.08 c.2.1.4,c.23.12.1 30094,31354 2vhxA 377 13.33 1s6yA 450 13.84 c.2.1.5,d.162.1.2 105314,105315 1lssA 140 14.48 c.2.1.9 74246 1a5zA 319 14.71 c.2.1.5,d.162.1.1 30181,42148 2vojA 371 14.86 1p77A 272 14.94 c.2.1.7,c.58.1.5 94214,94215 1j5pA 253 15.67 d.81.1.3,c.2.1.3 71577,83092 1qp8A 303 15.70 c.2.1.4,c.23.12.1 30092,31352 2o4cA 380 16.62 2hjsA 340 17.00 c.2.1.3,d.81.1.1 136547,136548 2hk9A 275 17.04 2ejwA 332 17.04 1lehA 364 17.11 c.2.1.7,c.58.1.1 30268,33916 2g17A 337 17.39 c.2.1.3,d.81.1.1 134512,134513 1nvmB 312 17.42 c.2.1.3,d.81.1.1 86251,86252 1nytA 271 17.88 c.2.1.7,c.58.1.5 86417,86418 1up7A 417 18.99 c.2.1.5,d.162.1.2 113374,113375 2nloA 302 19.36 2ixaA 444 19.44 1vknA 351 19.48 c.2.1.3,d.81.1.1 108676,108677 2d5cA 263 19.88 1o6zA 303 19.88 c.2.1.5,d.162.1.1 81107,81108 1luaA 287 20.92 c.2.1.7,c.58.1.4 78216,78217 1xgkA 352 23.70 c.2.1.2 115286 1x13A 401 27.36 1mldA 314 27.82 c.2.1.5,d.162.1.1 30122,42089 2r00A 336 28.12 2r6jA 318 29.53 1y81A 138 30.09 c.2.1.8 122731 1nvtA 287 31.13 c.2.1.7,c.58.1.5 86270,86271 1vi2A 300 31.16 c.2.1.7,c.58.1.5 100726,100727 2g1uA 155 33.21 2d59A 144 33.41 c.2.1.8 131266 1npyA 271 33.95 c.2.1.7,c.58.1.5 85995,85996 3c85A 183 34.64 2q49A 359 34.80 c.2.1.3,d.81.1.1 139831,139832 1l7dA 384 35.24 c.2.1.4,c.23.12.2 77774,77775 1sb8A 352 36.17 c.2.1.2 105410 2ph5A 480 36.39 2c29D 337 36.48 2aefA 234 36.61 1y1pA 342 37.21 c.2.1.2 122550 1iukA 140 37.36 c.2.1.8 83712 2cmd 312 37.45 2gz1A 366 37.71 c.2.1.3,d.81.1.1 135887,135888 1lsuA 147 38.29 c.2.1.9 74250 2bllA 345 38.41 c.2.1.2 128733 2cmdA 312 38.94 c.2.1.5,d.162.1.1 30135,42102 1lc0A 294 39.95 c.2.1.3,d.81.1.4 73823,73824 1oc2A 348 40.60 c.2.1.2 92765 1hdoA 206 45.70 c.2.1.2 60965 2hmvA 144 47.52 c.2.1.9 136615 2nqtA 352 47.70 1mo9A 523 49.15 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1z7bA 358 50.98 c.2.1.2 124599 2gn4A 344 51.24 1fl2A 310 51.50 c.3.1.5,c.3.1.5 59869,59870 1ys4A 354 52.04 2gasA 307 53.45 3c8mA 331 53.66 1c1dA 355 54.11 c.2.1.7,c.58.1.1 30270,33918 2gqwA 408 56.81 2pzmA 330 57.17 2b69A 343 57.55 c.2.1.2 127974 2o7sA 523 57.60 2p4hX 322 58.70 2pk3A 321 60.50 1q1rA 431 62.32 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1q7gA 359 63.47 c.2.1.3,d.81.1.2 96038,96039 2exxA 306 64.46 3grs 478 64.98 1xu9A 286 66.00 c.2.1.2 116052 1wmaA 276 66.72 c.2.1.2 121042 1id1A 153 69.20 c.2.1.9 62286 1xg5A 279 69.31 c.2.1.2 115277 2dm6A 333 69.79 b.35.1.2,c.2.1.1 131567,131568 2p5yA 311 70.58 2gdzA 267 71.14 c.2.1.2 135043 2a35A 215 71.34 c.2.1.2 126072 3grsA 478 71.94 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1t4bA 367 73.93 c.2.1.3,d.81.1.1 106406,106407 2a4kA 263 74.82 c.2.1.2 126156 2cduA 452 75.99 2c5aA 379 76.64 c.2.1.2 129894 1vl5A 260 77.61 c.66.1.41 108720 2czcA 334 77.66 d.81.1.1 131044 2bkaA 242 77.71 c.2.1.2 128666 1xq6A 253 80.36 c.2.1.2 115829 1gesA 450 81.46 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1w4xA 542 82.92 c.3.1.5,c.3.1.5 109171,109172 2j3hA 345 86.77 1yxmA 303 86.77 c.2.1.2 124192 1bdmA 327 87.78 c.2.1.5,d.162.1.1 30137,42104 2q1sA 377 88.34 2yquA 455 88.38 4uagA 437 89.33 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1b7gO 340 89.47 c.2.1.3,d.81.1.1 29992,39907