# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.001264 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.001679 2ahrA 259 0.001745 a.100.1.10,c.2.1.6 126775,126776 1yb4A 295 0.001856 1yqgA 263 0.002140 2h78A 302 0.002155 2cvzA 289 0.003064 a.100.1.1,c.2.1.6 130890,130891 2rcyA 262 0.003676 2pgd 482 0.003730 2pgdA 482 0.005162 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 0.005535 2graA 277 0.007228 2ew2A 316 0.008634 2f1kA 279 0.009298 a.100.1.12,c.2.1.6 132772,132773 2dpoA 319 0.01043 3c24A 286 0.01144 1mv8A 436 0.01250 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2o3jA 481 0.01355 2i76A 276 0.01478 1np3A 338 0.01610 a.100.1.2,c.2.1.6 85946,85947 1evyA 366 0.01646 a.100.1.6,c.2.1.6 18811,30215 1qmgA 524 0.01671 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 0.01758 2g5cA 281 0.01776 a.100.1.12,c.2.1.6 134646,134647 1x0vA 354 0.01813 1bg6A 359 0.02518 a.100.1.5,c.2.1.6 18810,30214 1z82A 335 0.02601 1i36A 264 0.02801 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 0.03051 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.03412 1bg6 359 0.03564 1f0yA 302 0.03924 a.100.1.3,c.2.1.6 18793,30197 1txgA 335 0.04001 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 0.04278 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.04422 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2qytA 317 0.06442 1zejA 293 0.09650 1zcjA 463 0.1312 1jayA 212 0.1622 c.2.1.6 66478 1qv9A 283 0.5638 c.127.1.1 96356 1obbA 480 1.160 c.2.1.5,d.162.1.2 86760,86761 2axqA 467 1.282 1vjtA 483 1.335 c.2.1.5,d.162.1.2 100833,100834 1guzA 310 1.618 c.2.1.5,d.162.1.1 65586,65587 2b0jA 358 1.805 a.100.1.11,c.2.1.6 127639,127640 1gdhA 320 2.971 c.2.1.4,c.23.12.1 30095,31355 1pzgA 331 3.464 c.2.1.5,d.162.1.1 95425,95426 1t2dA 322 3.471 c.2.1.5,d.162.1.1 99084,99085 2nacA 393 3.519 c.2.1.4,c.23.12.1 30088,31348 1s6yA 450 3.670 c.2.1.5,d.162.1.2 105314,105315 1hyhA 309 4.083 c.2.1.5,d.162.1.1 30150,42117 2ewdA 317 4.216 1f06A 320 4.522 c.2.1.3,d.81.1.3 59556,59557 2j6iA 364 4.534 2fssA 365 4.571 1ez4A 318 4.677 c.2.1.5,d.162.1.1 64917,64918 1lssA 140 4.743 c.2.1.9 74246 2v7pA 310 4.861 1ygyA 529 4.913 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1lldA 319 5.028 c.2.1.5,d.162.1.1 30177,42144 1j4aA 333 5.085 c.2.1.4,c.23.12.1 71502,71503 1omoA 322 5.131 c.2.1.13 104017 2i6tA 303 5.261 6ldhA 329 5.264 c.2.1.5,d.162.1.1 30161,42128 1wwkA 307 5.297 1x7dA 350 5.314 c.2.1.13 114927 2q4eA 362 5.344 2dbqA 334 5.563 2p2sA 336 5.612 1v8bA 479 5.800 c.2.1.4,c.23.12.3 113564,113565 1mx3A 347 5.837 c.2.1.4,c.23.12.1 79638,79639 1xdwA 331 5.839 2dc1A 236 5.868 1up7A 417 5.908 c.2.1.5,d.162.1.2 113374,113375 2ho3A 325 5.965 2nvwA 479 6.030 c.2.1.3,d.81.1.5 138665,138666 1gpjA 404 6.221 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1li4A 432 6.356 c.2.1.4,c.23.12.3 84616,84617 3ceaA 346 6.614 1dxy 333 6.945 1a5zA 319 7.370 c.2.1.5,d.162.1.1 30181,42148 2o4uX 334 7.587 1h6dA 433 7.736 c.2.1.3,d.81.1.5 65656,65657 1u8xX 472 7.741 c.2.1.5,d.162.1.2 107741,107742 1xeaA 323 7.772 c.2.1.3,d.81.1.5 109572,109573 2gcgA 330 8.191 1pjcA 361 8.209 c.2.1.4,c.23.12.2 30101,31361 1sc6A 404 8.236 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1uxjA 309 8.651 c.2.1.5,d.162.1.1 108112,108113 1drwA 273 8.655 c.2.1.3,d.81.1.3 30057,39972 1tltA 319 9.110 c.2.1.3,d.81.1.5 107135,107136 2pi1A 334 9.111 2glxA 332 9.286 2o4cA 380 9.381 2eggA 297 9.429 2cukA 311 9.437 3bioA 304 9.551 1drw 273 10.53 2g76A 335 10.90 1rydA 387 10.95 c.2.1.3,d.81.1.5 118801,118802 1p77A 272 11.02 c.2.1.7,c.58.1.5 94214,94215 3c1aA 315 11.04 1lsuA 147 11.37 c.2.1.9 74250 2g17A 337 11.43 c.2.1.3,d.81.1.1 134512,134513 2nloA 302 11.66 1qp8A 303 11.74 c.2.1.4,c.23.12.1 30092,31352 2hk9A 275 12.21 2hmvA 144 13.58 c.2.1.9 136615 1dxyA 333 13.68 c.2.1.4,c.23.12.1 30094,31354 2d0iA 333 13.78 2d5cA 263 14.08 1zh8A 340 14.67 c.2.1.3,d.81.1.5 125077,125078 2hjsA 340 15.44 c.2.1.3,d.81.1.1 136547,136548 1ff9A 450 16.61 c.2.1.3,d.81.1.2 30039,39954 1nvmB 312 16.99 c.2.1.3,d.81.1.1 86251,86252 2vhxA 377 17.80 1vknA 351 18.55 c.2.1.3,d.81.1.1 108676,108677 2eklA 313 18.90 2vojA 371 19.08 2g1uA 155 19.13 2ejwA 332 19.28 1nvtA 287 19.64 c.2.1.7,c.58.1.5 86270,86271 1y81A 138 19.80 c.2.1.8 122731 2ixaA 444 20.60 1id1A 153 21.58 c.2.1.9 62286 1j5pA 253 21.86 d.81.1.3,c.2.1.3 71577,83092 1lehA 364 22.56 c.2.1.7,c.58.1.1 30268,33916 1npyA 271 22.79 c.2.1.7,c.58.1.5 85995,85996 1nytA 271 22.85 c.2.1.7,c.58.1.5 86417,86418 1vi2A 300 23.31 c.2.1.7,c.58.1.5 100726,100727 2gz1A 366 24.57 c.2.1.3,d.81.1.1 135887,135888 2r6jA 318 24.63 1o6zA 303 25.87 c.2.1.5,d.162.1.1 81107,81108 2d59A 144 27.52 c.2.1.8 131266 1luaA 287 28.52 c.2.1.7,c.58.1.4 78216,78217 1x13A 401 28.65 1mldA 314 28.88 c.2.1.5,d.162.1.1 30122,42089 2aefA 234 30.02 2nqtA 352 30.41 2r00A 336 30.87 2q49A 359 31.14 c.2.1.3,d.81.1.1 139831,139832 1lc0A 294 31.39 c.2.1.3,d.81.1.4 73823,73824 1xgkA 352 31.69 c.2.1.2 115286 1sb8A 352 31.70 c.2.1.2 105410 1yovA 537 32.62 c.111.1.2 123785 2b69A 343 34.73 c.2.1.2 127974 1y1pA 342 34.77 c.2.1.2 122550 2o7sA 523 36.50 1iukA 140 40.54 c.2.1.8 83712 1q7gA 359 42.01 c.2.1.3,d.81.1.2 96038,96039 1nhpA 447 43.91 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1nhsA 447 44.34 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2cmdA 312 44.45 c.2.1.5,d.162.1.1 30135,42102 1l7dA 384 45.60 c.2.1.4,c.23.12.2 77774,77775 3c85A 183 45.66 1lluA 342 46.38 b.35.1.2,c.2.1.1 91064,91065 3c8mA 331 46.47 1orrA 347 47.33 c.2.1.2 93460 1ys4A 354 48.15 1fl2A 310 49.42 c.3.1.5,c.3.1.5 59869,59870 1yqdA 366 50.18 2c29D 337 50.63 1oc2A 348 51.12 c.2.1.2 92765 2ph5A 480 51.22 1hdoA 206 51.55 c.2.1.2 60965 1wvgA 359 52.44 c.2.1.2 121339 1xu9A 286 52.70 c.2.1.2 116052 1t4bA 367 56.47 c.2.1.3,d.81.1.1 106406,106407 2gdzA 267 58.00 c.2.1.2 135043 2cf5A 357 58.46 1c1dA 355 58.59 c.2.1.7,c.58.1.1 30270,33918 2gn4A 344 59.40 2cmd 312 59.66 2pzmA 330 61.60 2exxA 306 62.08 1y8qA 346 62.11 2cduA 452 64.66 1xg5A 279 64.82 c.2.1.2 115277 2b9eA 303 65.17 c.66.1.38 128124 1ebfA 358 65.36 c.2.1.3,d.81.1.2 30033,39948 2a35A 215 65.36 c.2.1.2 126072 2fk8A 318 65.45 c.66.1.18 133648 2blnA 305 65.66 b.46.1.1,c.65.1.1 128734,128735 1yxmA 303 67.69 c.2.1.2 124192 1z7bA 358 67.71 c.2.1.2 124599 1uufA 369 69.25 b.35.1.2,c.2.1.1 100006,100007 3cc8A 230 69.72 2czcA 334 70.39 d.81.1.1 131044 1y7tA 327 72.22 c.2.1.5,d.162.1.1 122718,122719 1b7gO 340 74.17 c.2.1.3,d.81.1.1 29992,39907 2bllA 345 74.54 c.2.1.2 128733 2p5yA 311 75.89 1kyqA 274 76.80 c.2.1.11,e.37.1.1 73281,73282 2bkaA 242 79.94 c.2.1.2 128666 2gqwA 408 80.51 1jw9B 249 82.74 c.111.1.1 67377 2z1mA 345 82.83 1rkxA 357 82.95 c.2.1.2 97631 1xxlA 239 82.99 c.66.1.41 116203 2dm6A 333 84.30 b.35.1.2,c.2.1.1 131567,131568 1i2cA 404 84.95 c.2.1.2 83666 1ve3A 227 86.29 c.66.1.43 120010 2gptA 523 86.32 1wmaA 276 86.59 c.2.1.2 121042 2gasA 307 88.42 1yqzA 438 89.83