# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.003858 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.005473 2ahrA 259 0.006568 a.100.1.10,c.2.1.6 126775,126776 1yb4A 295 0.007149 2h78A 302 0.007452 1yqgA 263 0.007638 2cvzA 289 0.01061 a.100.1.1,c.2.1.6 130890,130891 2rcyA 262 0.01225 2pgd 482 0.01318 2p4qA 497 0.01500 2pgdA 482 0.01753 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.02026 2ew2A 316 0.02561 2dpoA 319 0.02950 2o3jA 481 0.03202 2f1kA 279 0.03236 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.03361 2i76A 276 0.04286 1qmgA 524 0.04436 a.100.1.2,c.2.1.6 18785,30182 1mv8A 436 0.04611 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1np3A 338 0.04611 a.100.1.2,c.2.1.6 85946,85947 2pv7A 298 0.04988 1evyA 366 0.05267 a.100.1.6,c.2.1.6 18811,30215 2g5cA 281 0.05467 a.100.1.12,c.2.1.6 134646,134647 1x0vA 354 0.05701 1z82A 335 0.06067 1bg6A 359 0.06522 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 0.07061 a.100.1.7,c.2.1.6 68857,68858 1i36A 264 0.08266 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 0.1175 1yrlA 491 0.1203 1dliA 402 0.1234 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1txgA 335 0.1249 a.100.1.6,c.2.1.6 112775,112776 1f0yA 302 0.1260 a.100.1.3,c.2.1.6 18793,30197 1dljA 402 0.1343 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2qytA 317 0.2423 1zejA 293 0.2736 1zcjA 463 0.3575 1jayA 212 0.3622 c.2.1.6 66478 1qv9A 283 0.9552 c.127.1.1 96356 1vjtA 483 2.350 c.2.1.5,d.162.1.2 100833,100834 1guzA 310 2.420 c.2.1.5,d.162.1.1 65586,65587 2axqA 467 2.990 1obbA 480 3.676 c.2.1.5,d.162.1.2 86760,86761 1t2dA 322 3.799 c.2.1.5,d.162.1.1 99084,99085 2b0jA 358 4.060 a.100.1.11,c.2.1.6 127639,127640 1hyhA 309 4.185 c.2.1.5,d.162.1.1 30150,42117 2ewdA 317 4.518 1gdhA 320 4.578 c.2.1.4,c.23.12.1 30095,31355 1ygyA 529 4.647 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1ez4A 318 5.158 c.2.1.5,d.162.1.1 64917,64918 1pzgA 331 5.402 c.2.1.5,d.162.1.1 95425,95426 1s6yA 450 5.514 c.2.1.5,d.162.1.2 105314,105315 2nacA 393 5.822 c.2.1.4,c.23.12.1 30088,31348 6ldhA 329 6.291 c.2.1.5,d.162.1.1 30161,42128 1u8xX 472 6.456 c.2.1.5,d.162.1.2 107741,107742 1lssA 140 6.598 c.2.1.9 74246 1j4aA 333 6.641 c.2.1.4,c.23.12.1 71502,71503 1lldA 319 6.880 c.2.1.5,d.162.1.1 30177,42144 2dbqA 334 7.019 1uxjA 309 7.167 c.2.1.5,d.162.1.1 108112,108113 2i6tA 303 7.716 1up7A 417 8.213 c.2.1.5,d.162.1.2 113374,113375 1wwkA 307 8.662 2v7pA 310 8.715 2q4eA 362 8.908 1a5zA 319 8.937 c.2.1.5,d.162.1.1 30181,42148 2dc1A 236 9.079 1dxy 333 9.114 1f06A 320 9.256 c.2.1.3,d.81.1.3 59556,59557 2p2sA 336 9.664 2glxA 332 9.97 1xdwA 331 9.97 1omoA 322 10.29 c.2.1.13 104017 1xeaA 323 10.39 c.2.1.3,d.81.1.5 109572,109573 2o4uX 334 11.08 2pi1A 334 11.39 2fssA 365 11.57 1mx3A 347 11.67 c.2.1.4,c.23.12.1 79638,79639 2ho3A 325 11.68 1drwA 273 11.79 c.2.1.3,d.81.1.3 30057,39972 2nvwA 479 11.99 c.2.1.3,d.81.1.5 138665,138666 3ceaA 346 12.16 1sc6A 404 12.37 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2o4cA 380 12.53 3c1aA 315 12.96 1lsuA 147 13.07 c.2.1.9 74250 2cukA 311 13.49 2g17A 337 13.57 c.2.1.3,d.81.1.1 134512,134513 1h6dA 433 13.59 c.2.1.3,d.81.1.5 65656,65657 1dxyA 333 13.85 c.2.1.4,c.23.12.1 30094,31354 2g76A 335 14.23 3bioA 304 14.24 2hk9A 275 14.25 1drw 273 14.28 2eggA 297 14.80 2d5cA 263 15.93 2hmvA 144 17.00 c.2.1.9 136615 1qp8A 303 17.32 c.2.1.4,c.23.12.1 30092,31352 1zh8A 340 17.41 c.2.1.3,d.81.1.5 125077,125078 2d0iA 333 17.80 2gcgA 330 18.94 1nvmB 312 18.99 c.2.1.3,d.81.1.1 86251,86252 1pjcA 361 19.25 c.2.1.4,c.23.12.2 30101,31361 2ixaA 444 20.79 2eklA 313 21.29 1gpjA 404 21.43 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1li4A 432 21.52 c.2.1.4,c.23.12.3 84616,84617 2j6iA 364 21.57 2hjsA 340 21.70 c.2.1.3,d.81.1.1 136547,136548 1vknA 351 21.89 c.2.1.3,d.81.1.1 108676,108677 1x7dA 350 22.03 c.2.1.13 114927 2nqtA 352 22.04 2vojA 371 24.24 1mldA 314 24.52 c.2.1.5,d.162.1.1 30122,42089 1y81A 138 25.54 c.2.1.8 122731 2aefA 234 27.08 1ff9A 450 27.41 c.2.1.3,d.81.1.2 30039,39954 1j5pA 253 27.61 d.81.1.3,c.2.1.3 71577,83092 1nytA 271 28.89 c.2.1.7,c.58.1.5 86417,86418 2g1uA 155 29.34 2d59A 144 30.25 c.2.1.8 131266 1vi2A 300 30.32 c.2.1.7,c.58.1.5 100726,100727 1p77A 272 31.13 c.2.1.7,c.58.1.5 94214,94215 1rydA 387 31.27 c.2.1.3,d.81.1.5 118801,118802 2r6jA 318 32.36 1luaA 287 33.01 c.2.1.7,c.58.1.4 78216,78217 1id1A 153 33.47 c.2.1.9 62286 3c85A 183 34.09 2nloA 302 34.59 1x13A 401 35.10 1xgkA 352 35.76 c.2.1.2 115286 2ph5A 480 37.21 2b69A 343 37.51 c.2.1.2 127974 2o7sA 523 37.84 2cmd 312 37.96 2cduA 452 38.68 2ejwA 332 39.17 1tltA 319 39.20 c.2.1.3,d.81.1.5 107135,107136 2r00A 336 39.77 1lc0A 294 39.91 c.2.1.3,d.81.1.4 73823,73824 1sb8A 352 41.30 c.2.1.2 105410 1orrA 347 43.40 c.2.1.2 93460 2cmdA 312 44.25 c.2.1.5,d.162.1.1 30135,42102 2gz1A 366 44.58 c.2.1.3,d.81.1.1 135887,135888 1npyA 271 46.31 c.2.1.7,c.58.1.5 85995,85996 2q49A 359 47.36 c.2.1.3,d.81.1.1 139831,139832 3c8mA 331 50.83 1yovA 537 52.08 c.111.1.2 123785 2fk8A 318 52.81 c.66.1.18 133648 1xxlA 239 52.85 c.66.1.41 116203 1nvtA 287 53.16 c.2.1.7,c.58.1.5 86270,86271 1y1pA 342 53.21 c.2.1.2 122550 1hdoA 206 54.27 c.2.1.2 60965 1oc2A 348 55.66 c.2.1.2 92765 1iukA 140 57.37 c.2.1.8 83712 1c1dA 355 60.50 c.2.1.7,c.58.1.1 30270,33918 1oi7A 288 61.55 c.2.1.8,c.23.4.1 87049,87050 1xu9A 286 62.30 c.2.1.2 116052 1nhsA 447 62.51 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1o6zA 303 63.99 c.2.1.5,d.162.1.1 81107,81108 1y7tA 327 64.22 c.2.1.5,d.162.1.1 122718,122719 1t4bA 367 64.83 c.2.1.3,d.81.1.1 106406,106407 2gn4A 344 65.13 1rkxA 357 68.20 c.2.1.2 97631 1yxmA 303 68.35 c.2.1.2 124192 1uirA 314 69.26 c.66.1.17 99429 2pzmA 330 69.27 1vl5A 260 69.93 c.66.1.41 108720 1z7bA 358 70.32 c.2.1.2 124599 2hrzA 342 71.56 3cc8A 230 71.73 2b9eA 303 72.15 c.66.1.38 128124 2p5yA 311 72.50 2exxA 306 74.24 2p91A 285 75.11 1mo9A 523 75.44 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1kyqA 274 75.61 c.2.1.11,e.37.1.1 73281,73282 1l7dA 384 75.92 c.2.1.4,c.23.12.2 77774,77775 2a35A 215 76.39 c.2.1.2 126072 1lluA 342 77.46 b.35.1.2,c.2.1.1 91064,91065 2gasA 307 79.80 2yqzA 263 83.13 1w6uA 302 83.40 c.2.1.2 114288 1xg5A 279 88.40 c.2.1.2 115277 2ozpA 345 89.43