# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.001108 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.001610 2ahrA 259 0.001727 a.100.1.10,c.2.1.6 126775,126776 1yb4A 295 0.001741 2h78A 302 0.002120 1yqgA 263 0.002133 2cvzA 289 0.002905 a.100.1.1,c.2.1.6 130890,130891 2pgd 482 0.003489 2rcyA 262 0.003501 2pgdA 482 0.004702 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 0.005592 2graA 277 0.006857 2ew2A 316 0.008744 2f1kA 279 0.009258 a.100.1.12,c.2.1.6 132772,132773 2dpoA 319 0.00995 3c24A 286 0.01124 2o3jA 481 0.01184 1mv8A 436 0.01193 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2i76A 276 0.01446 1evyA 366 0.01598 a.100.1.6,c.2.1.6 18811,30215 1qmgA 524 0.01636 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 0.01682 1np3A 338 0.01710 a.100.1.2,c.2.1.6 85946,85947 2g5cA 281 0.01755 a.100.1.12,c.2.1.6 134646,134647 1x0vA 354 0.01805 1bg6A 359 0.02383 a.100.1.5,c.2.1.6 18810,30214 1i36A 264 0.02659 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 0.02771 a.100.1.7,c.2.1.6 68857,68858 1z82A 335 0.02865 1bg6 359 0.03479 1yrlA 491 0.03542 1f0yA 302 0.03833 a.100.1.3,c.2.1.6 18793,30197 1txgA 335 0.04092 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 0.04157 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.04517 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2qytA 317 0.06724 1zejA 293 0.08943 1zcjA 463 0.1231 1jayA 212 0.1565 c.2.1.6 66478 1qv9A 283 0.4649 c.127.1.1 96356 1obbA 480 0.9741 c.2.1.5,d.162.1.2 86760,86761 1vjtA 483 1.197 c.2.1.5,d.162.1.2 100833,100834 2axqA 467 1.201 1guzA 310 1.551 c.2.1.5,d.162.1.1 65586,65587 2b0jA 358 1.923 a.100.1.11,c.2.1.6 127639,127640 1gdhA 320 2.447 c.2.1.4,c.23.12.1 30095,31355 1t2dA 322 2.888 c.2.1.5,d.162.1.1 99084,99085 2nacA 393 2.989 c.2.1.4,c.23.12.1 30088,31348 1pzgA 331 3.003 c.2.1.5,d.162.1.1 95425,95426 1s6yA 450 3.202 c.2.1.5,d.162.1.2 105314,105315 1ygyA 529 3.446 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2j6iA 364 3.489 2fssA 365 3.692 2ewdA 317 3.707 1j4aA 333 3.764 c.2.1.4,c.23.12.1 71502,71503 1hyhA 309 3.859 c.2.1.5,d.162.1.1 30150,42117 1f06A 320 4.015 c.2.1.3,d.81.1.3 59556,59557 2dbqA 334 4.315 1wwkA 307 4.383 1xdwA 331 4.474 2v7pA 310 4.642 2i6tA 303 4.713 6ldhA 329 4.739 c.2.1.5,d.162.1.1 30161,42128 1up7A 417 4.742 c.2.1.5,d.162.1.2 113374,113375 1lssA 140 4.766 c.2.1.9 74246 1mx3A 347 4.908 c.2.1.4,c.23.12.1 79638,79639 1lldA 319 4.919 c.2.1.5,d.162.1.1 30177,42144 1x7dA 350 4.964 c.2.1.13 114927 1ez4A 318 5.157 c.2.1.5,d.162.1.1 64917,64918 1dxy 333 5.161 1omoA 322 5.189 c.2.1.13 104017 1v8bA 479 5.279 c.2.1.4,c.23.12.3 113564,113565 2p2sA 336 5.424 2dc1A 236 5.488 2q4eA 362 5.548 2nvwA 479 5.993 c.2.1.3,d.81.1.5 138665,138666 1gpjA 404 6.355 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3ceaA 346 6.410 2gcgA 330 6.479 2pi1A 334 6.491 1li4A 432 6.504 c.2.1.4,c.23.12.3 84616,84617 1u8xX 472 6.672 c.2.1.5,d.162.1.2 107741,107742 1a5zA 319 6.789 c.2.1.5,d.162.1.1 30181,42148 1sc6A 404 7.015 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2ho3A 325 7.034 2cukA 311 7.518 1uxjA 309 7.611 c.2.1.5,d.162.1.1 108112,108113 2o4uX 334 7.702 1drwA 273 7.889 c.2.1.3,d.81.1.3 30057,39972 2o4cA 380 7.898 1pjcA 361 7.937 c.2.1.4,c.23.12.2 30101,31361 1h6dA 433 7.995 c.2.1.3,d.81.1.5 65656,65657 2eggA 297 8.889 1xeaA 323 9.100 c.2.1.3,d.81.1.5 109572,109573 3bioA 304 9.110 1tltA 319 9.173 c.2.1.3,d.81.1.5 107135,107136 1dxyA 333 9.242 c.2.1.4,c.23.12.1 30094,31354 2g76A 335 9.97 1drw 273 10.04 2glxA 332 10.52 1p77A 272 10.63 c.2.1.7,c.58.1.5 94214,94215 1qp8A 303 10.71 c.2.1.4,c.23.12.1 30092,31352 2g17A 337 10.89 c.2.1.3,d.81.1.1 134512,134513 2nloA 302 11.03 1rydA 387 11.03 c.2.1.3,d.81.1.5 118801,118802 2d0iA 333 11.11 2hk9A 275 11.13 3c1aA 315 11.24 1lsuA 147 11.62 c.2.1.9 74250 2d5cA 263 12.79 2hmvA 144 13.24 c.2.1.9 136615 1nvmB 312 14.04 c.2.1.3,d.81.1.1 86251,86252 1vknA 351 14.07 c.2.1.3,d.81.1.1 108676,108677 1ff9A 450 14.51 c.2.1.3,d.81.1.2 30039,39954 1zh8A 340 15.59 c.2.1.3,d.81.1.5 125077,125078 2hjsA 340 16.18 c.2.1.3,d.81.1.1 136547,136548 2eklA 313 17.53 2ixaA 444 17.59 2ejwA 332 18.15 2vojA 371 18.40 1j5pA 253 18.59 d.81.1.3,c.2.1.3 71577,83092 1nvtA 287 18.72 c.2.1.7,c.58.1.5 86270,86271 2vhxA 377 19.10 1vi2A 300 19.98 c.2.1.7,c.58.1.5 100726,100727 1id1A 153 20.97 c.2.1.9 62286 2g1uA 155 21.06 1nytA 271 21.78 c.2.1.7,c.58.1.5 86417,86418 1y81A 138 21.88 c.2.1.8 122731 2r6jA 318 21.93 1npyA 271 21.97 c.2.1.7,c.58.1.5 85995,85996 1o6zA 303 23.02 c.2.1.5,d.162.1.1 81107,81108 2gz1A 366 23.82 c.2.1.3,d.81.1.1 135887,135888 1x13A 401 24.93 1sb8A 352 24.96 c.2.1.2 105410 1lehA 364 25.57 c.2.1.7,c.58.1.1 30268,33916 2aefA 234 26.02 1mldA 314 26.46 c.2.1.5,d.162.1.1 30122,42089 2nqtA 352 26.62 1luaA 287 26.79 c.2.1.7,c.58.1.4 78216,78217 1xgkA 352 26.94 c.2.1.2 115286 2d59A 144 26.94 c.2.1.8 131266 1lc0A 294 28.78 c.2.1.3,d.81.1.4 73823,73824 2r00A 336 29.31 2b69A 343 30.38 c.2.1.2 127974 2q49A 359 30.81 c.2.1.3,d.81.1.1 139831,139832 1y1pA 342 32.42 c.2.1.2 122550 1yovA 537 33.17 c.111.1.2 123785 2cmdA 312 33.22 c.2.1.5,d.162.1.1 30135,42102 1orrA 347 34.48 c.2.1.2 93460 2o7sA 523 35.22 1q7gA 359 37.91 c.2.1.3,d.81.1.2 96038,96039 1oc2A 348 38.88 c.2.1.2 92765 1iukA 140 39.16 c.2.1.8 83712 1wvgA 359 40.45 c.2.1.2 121339 1l7dA 384 41.37 c.2.1.4,c.23.12.2 77774,77775 1hdoA 206 42.67 c.2.1.2 60965 1ys4A 354 42.96 3c8mA 331 43.12 2c29D 337 44.45 1yqdA 366 45.64 2ph5A 480 47.55 3c85A 183 49.20 2cmd 312 49.81 1lluA 342 50.16 b.35.1.2,c.2.1.1 91064,91065 1xu9A 286 50.18 c.2.1.2 116052 1fl2A 310 50.32 c.3.1.5,c.3.1.5 59869,59870 1z7bA 358 51.04 c.2.1.2 124599 1t4bA 367 51.79 c.2.1.3,d.81.1.1 106406,106407 2pzmA 330 52.08 2gdzA 267 52.70 c.2.1.2 135043 2bllA 345 54.34 c.2.1.2 128733 1b7gO 340 55.28 c.2.1.3,d.81.1.1 29992,39907 1nhpA 447 55.68 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2cf5A 357 56.19 2exxA 306 56.64 1nhsA 447 57.34 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2gn4A 344 58.03 2blnA 305 58.11 b.46.1.1,c.65.1.1 128734,128735 2p5yA 311 58.49 1ebfA 358 58.73 c.2.1.3,d.81.1.2 30033,39948 1yxmA 303 59.96 c.2.1.2 124192 2czcA 334 60.02 d.81.1.1 131044 2fk8A 318 60.51 c.66.1.18 133648 1xxlA 239 61.05 c.66.1.41 116203 1y8qA 346 61.36 2a35A 215 61.56 c.2.1.2 126072 3cc8A 230 61.69 1y7tA 327 62.76 c.2.1.5,d.162.1.1 122718,122719 1xg5A 279 62.80 c.2.1.2 115277 1rkxA 357 63.33 c.2.1.2 97631 2cduA 452 64.81 2b9eA 303 65.08 c.66.1.38 128124 2z1mA 345 68.23 1vl5A 260 68.34 c.66.1.41 108720 1c1dA 355 68.60 c.2.1.7,c.58.1.1 30270,33918 1uufA 369 72.80 b.35.1.2,c.2.1.1 100006,100007 1kyqA 274 73.80 c.2.1.11,e.37.1.1 73281,73282 2bkaA 242 73.84 c.2.1.2 128666 1jw9B 249 74.60 c.111.1.1 67377 2dm6A 333 77.12 b.35.1.2,c.2.1.1 131567,131568 1wmaA 276 78.63 c.2.1.2 121042 2p4hX 322 79.24 2gasA 307 81.12 1ve3A 227 81.21 c.66.1.43 120010 2gptA 523 83.07 1z45A 699 84.19 b.30.5.4,c.2.1.2 124427,124428 1i2cA 404 84.77 c.2.1.2 83666 2gqwA 408 87.34 2yyyA 343 88.53 1hyeA 313 89.00 c.2.1.5,d.162.1.1 61400,61401 2q46A 253 89.49 c.2.1.2 139825