# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.001570 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.002027 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.002030 1yqgA 263 0.002651 1yb4A 295 0.002704 2h78A 302 0.003575 2pgd 482 0.004050 2cvzA 289 0.004326 a.100.1.1,c.2.1.6 130890,130891 2graA 277 0.004935 2p4qA 497 0.005121 2rcyA 262 0.005228 2pgdA 482 0.005733 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.009825 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.01084 2ew2A 316 0.01190 2dpoA 319 0.01220 1mv8A 436 0.01581 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1np3A 338 0.01687 a.100.1.2,c.2.1.6 85946,85947 2o3jA 481 0.01919 2i76A 276 0.01955 2pv7A 298 0.02022 1qmgA 524 0.02355 a.100.1.2,c.2.1.6 18785,30182 2g5cA 281 0.02365 a.100.1.12,c.2.1.6 134646,134647 1evyA 366 0.02697 a.100.1.6,c.2.1.6 18811,30215 1bg6A 359 0.02757 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 0.02793 a.100.1.7,c.2.1.6 68857,68858 1x0vA 354 0.03005 1z82A 335 0.03601 1i36A 264 0.03618 a.100.1.8,c.2.1.6 71108,71109 1yrlA 491 0.04434 1txgA 335 0.04752 a.100.1.6,c.2.1.6 112775,112776 1bg6 359 0.05322 1f0yA 302 0.05475 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 0.06610 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.07437 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2qytA 317 0.07553 1zejA 293 0.1409 1zcjA 463 0.1605 1jayA 212 0.1887 c.2.1.6 66478 1qv9A 283 0.2476 c.127.1.1 96356 1vjtA 483 1.113 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 1.124 c.2.1.5,d.162.1.2 86760,86761 2axqA 467 1.495 2b0jA 358 1.955 a.100.1.11,c.2.1.6 127639,127640 1guzA 310 2.006 c.2.1.5,d.162.1.1 65586,65587 1s6yA 450 2.669 c.2.1.5,d.162.1.2 105314,105315 1lldA 319 3.020 c.2.1.5,d.162.1.1 30177,42144 1hyhA 309 3.208 c.2.1.5,d.162.1.1 30150,42117 1ygyA 529 3.920 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1f06A 320 3.925 c.2.1.3,d.81.1.3 59556,59557 1pzgA 331 3.964 c.2.1.5,d.162.1.1 95425,95426 1gdhA 320 4.055 c.2.1.4,c.23.12.1 30095,31355 2fssA 365 4.815 2j6iA 364 4.851 1t2dA 322 4.883 c.2.1.5,d.162.1.1 99084,99085 2nacA 393 5.155 c.2.1.4,c.23.12.1 30088,31348 1ez4A 318 5.522 c.2.1.5,d.162.1.1 64917,64918 2ewdA 317 5.790 2dbqA 334 5.807 2nvwA 479 5.859 c.2.1.3,d.81.1.5 138665,138666 1up7A 417 6.358 c.2.1.5,d.162.1.2 113374,113375 1j4aA 333 6.386 c.2.1.4,c.23.12.1 71502,71503 1x7dA 350 6.421 c.2.1.13 114927 1u8xX 472 6.607 c.2.1.5,d.162.1.2 107741,107742 1omoA 322 6.808 c.2.1.13 104017 1mx3A 347 6.934 c.2.1.4,c.23.12.1 79638,79639 2q4eA 362 7.112 1dxy 333 7.153 1lssA 140 7.193 c.2.1.9 74246 2eklA 313 7.453 1h6dA 433 7.472 c.2.1.3,d.81.1.5 65656,65657 2p2sA 336 7.541 1wwkA 307 7.769 6ldhA 329 7.788 c.2.1.5,d.162.1.1 30161,42128 1xdwA 331 8.019 1v8bA 479 8.158 c.2.1.4,c.23.12.3 113564,113565 1drwA 273 8.179 c.2.1.3,d.81.1.3 30057,39972 2i6tA 303 8.230 3bioA 304 8.244 2v7pA 310 8.266 2gcgA 330 8.438 2o4cA 380 8.470 2ho3A 325 8.530 2pi1A 334 8.768 1tltA 319 8.798 c.2.1.3,d.81.1.5 107135,107136 3ceaA 346 8.873 1drw 273 9.004 1xeaA 323 9.079 c.2.1.3,d.81.1.5 109572,109573 1gpjA 404 9.132 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2dc1A 236 9.180 1li4A 432 9.360 c.2.1.4,c.23.12.3 84616,84617 1a5zA 319 9.506 c.2.1.5,d.162.1.1 30181,42148 1uxjA 309 9.742 c.2.1.5,d.162.1.1 108112,108113 2eggA 297 10.62 2cukA 311 10.90 3c1aA 315 10.92 1rydA 387 11.02 c.2.1.3,d.81.1.5 118801,118802 1sc6A 404 11.53 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2g76A 335 12.14 2hjsA 340 12.30 c.2.1.3,d.81.1.1 136547,136548 1dxyA 333 12.50 c.2.1.4,c.23.12.1 30094,31354 2g17A 337 12.63 c.2.1.3,d.81.1.1 134512,134513 1vknA 351 13.34 c.2.1.3,d.81.1.1 108676,108677 1pjcA 361 13.36 c.2.1.4,c.23.12.2 30101,31361 1nvmB 312 13.54 c.2.1.3,d.81.1.1 86251,86252 2glxA 332 13.94 2o4uX 334 14.05 2d0iA 333 14.36 1ff9A 450 14.50 c.2.1.3,d.81.1.2 30039,39954 2ixaA 444 15.29 1lsuA 147 15.87 c.2.1.9 74250 1zh8A 340 16.07 c.2.1.3,d.81.1.5 125077,125078 2r6jA 318 16.46 2hk9A 275 16.62 1p77A 272 16.70 c.2.1.7,c.58.1.5 94214,94215 2gz1A 366 18.53 c.2.1.3,d.81.1.1 135887,135888 2d5cA 263 18.72 1qp8A 303 20.31 c.2.1.4,c.23.12.1 30092,31352 2nloA 302 20.56 1j5pA 253 20.56 d.81.1.3,c.2.1.3 71577,83092 2r00A 336 22.27 2g1uA 155 22.50 2hmvA 144 23.91 c.2.1.9 136615 2vojA 371 24.49 2ph5A 480 24.87 1nvtA 287 25.18 c.2.1.7,c.58.1.5 86270,86271 2nqtA 352 25.38 2ejwA 332 26.34 2aefA 234 27.58 1yovA 537 27.88 c.111.1.2 123785 2q49A 359 28.31 c.2.1.3,d.81.1.1 139831,139832 2c29D 337 28.48 1mldA 314 30.06 c.2.1.5,d.162.1.1 30122,42089 1xgkA 352 30.36 c.2.1.2 115286 1y1pA 342 30.99 c.2.1.2 122550 1x13A 401 31.54 1npyA 271 32.06 c.2.1.7,c.58.1.5 85995,85996 1y81A 138 32.41 c.2.1.8 122731 1ys4A 354 32.73 1lc0A 294 32.82 c.2.1.3,d.81.1.4 73823,73824 1lehA 364 33.34 c.2.1.7,c.58.1.1 30268,33916 1id1A 153 36.73 c.2.1.9 62286 1nytA 271 37.54 c.2.1.7,c.58.1.5 86417,86418 2vhxA 377 37.90 1vi2A 300 38.17 c.2.1.7,c.58.1.5 100726,100727 1o6zA 303 38.82 c.2.1.5,d.162.1.1 81107,81108 1q7gA 359 39.33 c.2.1.3,d.81.1.2 96038,96039 3c85A 183 39.44 1hdoA 206 41.86 c.2.1.2 60965 1l7dA 384 42.80 c.2.1.4,c.23.12.2 77774,77775 1sb8A 352 44.82 c.2.1.2 105410 2gn4A 344 44.92 1iukA 140 45.62 c.2.1.8 83712 2pzmA 330 45.84 2cmdA 312 46.14 c.2.1.5,d.162.1.1 30135,42102 2cmd 312 46.98 2d59A 144 50.37 c.2.1.8 131266 2fk8A 318 53.35 c.66.1.18 133648 1yxmA 303 54.59 c.2.1.2 124192 2b69A 343 54.71 c.2.1.2 127974 2ozpA 345 56.01 1b7gO 340 56.26 c.2.1.3,d.81.1.1 29992,39907 1luaA 287 57.89 c.2.1.7,c.58.1.4 78216,78217 1oc2A 348 58.01 c.2.1.2 92765 2exxA 306 59.00 2a35A 215 59.50 c.2.1.2 126072 1y7tA 327 60.09 c.2.1.5,d.162.1.1 122718,122719 1fl2A 310 62.02 c.3.1.5,c.3.1.5 59869,59870 2gdzA 267 62.77 c.2.1.2 135043 2cduA 452 63.04 1y8qA 346 64.91 1kyqA 274 64.97 c.2.1.11,e.37.1.1 73281,73282 1wmaA 276 65.14 c.2.1.2 121042 1t4bA 367 66.79 c.2.1.3,d.81.1.1 106406,106407 1nhsA 447 66.96 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2q1sA 377 67.75 1yqdA 366 67.93 3c8mA 331 68.15 1xu9A 286 68.33 c.2.1.2 116052 2bllA 345 68.41 c.2.1.2 128733 2gasA 307 70.03 2cf5A 357 70.40 4uagA 437 72.66 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1i2cA 404 73.60 c.2.1.2 83666 2o7sA 523 74.52 2pk3A 321 74.81 1xg5A 279 78.56 c.2.1.2 115277 1z7bA 358 81.98 c.2.1.2 124599 1ebfA 358 82.56 c.2.1.3,d.81.1.2 30033,39948 2blnA 305 84.43 b.46.1.1,c.65.1.1 128734,128735 1nhpA 447 89.48 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1orrA 347 89.80 c.2.1.2 93460