# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000605 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000814 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000980 1yqgA 263 0.001115 1yb4A 295 0.001175 2pgd 482 0.001685 2h78A 302 0.001699 2cvzA 289 0.001709 a.100.1.1,c.2.1.6 130890,130891 2graA 277 0.002270 2p4qA 497 0.002284 2pgdA 482 0.002369 a.100.1.1,c.2.1.6 18778,30190 2rcyA 262 0.002504 2f1kA 279 0.004367 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.005585 2ew2A 316 0.005600 2dpoA 319 0.006443 1mv8A 436 0.006445 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2i76A 276 0.008936 1np3A 338 0.009668 a.100.1.2,c.2.1.6 85946,85947 2o3jA 481 0.01034 1evyA 366 0.01071 a.100.1.6,c.2.1.6 18811,30215 1qmgA 524 0.01091 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 0.01153 2g5cA 281 0.01241 a.100.1.12,c.2.1.6 134646,134647 1x0vA 354 0.01299 1bg6A 359 0.01311 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 0.01517 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.01595 1i36A 264 0.01902 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 0.01915 1bg6 359 0.02511 1txgA 335 0.02588 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 0.02629 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1f0yA 302 0.03010 a.100.1.3,c.2.1.6 18793,30197 1dljA 402 0.03403 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2qytA 317 0.04181 1zejA 293 0.06880 1zcjA 463 0.08198 1jayA 212 0.1142 c.2.1.6 66478 1qv9A 283 0.1980 c.127.1.1 96356 1obbA 480 0.7332 c.2.1.5,d.162.1.2 86760,86761 1vjtA 483 0.8499 c.2.1.5,d.162.1.2 100833,100834 2axqA 467 1.044 2b0jA 358 1.260 a.100.1.11,c.2.1.6 127639,127640 1guzA 310 1.341 c.2.1.5,d.162.1.1 65586,65587 1s6yA 450 1.733 c.2.1.5,d.162.1.2 105314,105315 1hyhA 309 2.180 c.2.1.5,d.162.1.1 30150,42117 1gdhA 320 2.371 c.2.1.4,c.23.12.1 30095,31355 1ygyA 529 2.406 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2fssA 365 2.512 1lldA 319 2.577 c.2.1.5,d.162.1.1 30177,42144 2j6iA 364 2.610 1pzgA 331 2.763 c.2.1.5,d.162.1.1 95425,95426 2nacA 393 2.770 c.2.1.4,c.23.12.1 30088,31348 1f06A 320 2.874 c.2.1.3,d.81.1.3 59556,59557 2nvwA 479 3.212 c.2.1.3,d.81.1.5 138665,138666 2dbqA 334 3.533 1wwkA 307 3.841 1mx3A 347 3.886 c.2.1.4,c.23.12.1 79638,79639 1j4aA 333 3.929 c.2.1.4,c.23.12.1 71502,71503 1ez4A 318 3.994 c.2.1.5,d.162.1.1 64917,64918 1u8xX 472 4.180 c.2.1.5,d.162.1.2 107741,107742 2ewdA 317 4.190 1gpjA 404 4.211 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2eklA 313 4.240 1x7dA 350 4.279 c.2.1.13 114927 6ldhA 329 4.324 c.2.1.5,d.162.1.1 30161,42128 2q4eA 362 4.346 1t2dA 322 4.393 c.2.1.5,d.162.1.1 99084,99085 2ho3A 325 4.450 1li4A 432 4.524 c.2.1.4,c.23.12.3 84616,84617 1dxy 333 4.561 1xdwA 331 4.718 2p2sA 336 4.808 1omoA 322 4.816 c.2.1.13 104017 1xeaA 323 4.959 c.2.1.3,d.81.1.5 109572,109573 1lssA 140 5.037 c.2.1.9 74246 1h6dA 433 5.191 c.2.1.3,d.81.1.5 65656,65657 1up7A 417 5.203 c.2.1.5,d.162.1.2 113374,113375 2dc1A 236 5.286 3ceaA 346 5.402 1v8bA 479 5.416 c.2.1.4,c.23.12.3 113564,113565 2gcgA 330 5.554 2v7pA 310 5.901 2o4cA 380 5.956 2pi1A 334 6.006 1sc6A 404 6.045 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxyA 333 6.157 c.2.1.4,c.23.12.1 30094,31354 1a5zA 319 6.265 c.2.1.5,d.162.1.1 30181,42148 2i6tA 303 6.421 3bioA 304 6.586 1tltA 319 6.835 c.2.1.3,d.81.1.5 107135,107136 1drwA 273 6.889 c.2.1.3,d.81.1.3 30057,39972 2cukA 311 7.231 1pjcA 361 7.635 c.2.1.4,c.23.12.2 30101,31361 2eggA 297 7.641 1rydA 387 7.689 c.2.1.3,d.81.1.5 118801,118802 2o4uX 334 8.096 1uxjA 309 8.202 c.2.1.5,d.162.1.1 108112,108113 2g17A 337 8.236 c.2.1.3,d.81.1.1 134512,134513 2glxA 332 8.305 1drw 273 8.548 1ff9A 450 8.590 c.2.1.3,d.81.1.2 30039,39954 3c1aA 315 8.868 2d0iA 333 9.131 1p77A 272 9.745 c.2.1.7,c.58.1.5 94214,94215 2g76A 335 10.69 1nvmB 312 10.85 c.2.1.3,d.81.1.1 86251,86252 1qp8A 303 11.01 c.2.1.4,c.23.12.1 30092,31352 1lsuA 147 11.24 c.2.1.9 74250 2hk9A 275 11.49 2d5cA 263 11.52 1zh8A 340 11.72 c.2.1.3,d.81.1.5 125077,125078 2ixaA 444 11.78 1vknA 351 13.11 c.2.1.3,d.81.1.1 108676,108677 2r6jA 318 13.18 2hjsA 340 13.64 c.2.1.3,d.81.1.1 136547,136548 2nloA 302 13.77 2vojA 371 13.81 2vhxA 377 14.66 1lehA 364 15.17 c.2.1.7,c.58.1.1 30268,33916 2ejwA 332 15.39 2g1uA 155 17.66 1x13A 401 18.17 2hmvA 144 18.79 c.2.1.9 136615 2aefA 234 18.80 1j5pA 253 19.41 d.81.1.3,c.2.1.3 71577,83092 1nytA 271 20.46 c.2.1.7,c.58.1.5 86417,86418 1nvtA 287 20.64 c.2.1.7,c.58.1.5 86270,86271 2r00A 336 21.23 1npyA 271 21.52 c.2.1.7,c.58.1.5 85995,85996 2gz1A 366 22.22 c.2.1.3,d.81.1.1 135887,135888 1yovA 537 22.28 c.111.1.2 123785 2ph5A 480 22.40 2q49A 359 22.41 c.2.1.3,d.81.1.1 139831,139832 1y81A 138 24.39 c.2.1.8 122731 1xgkA 352 24.55 c.2.1.2 115286 1vi2A 300 26.55 c.2.1.7,c.58.1.5 100726,100727 1l7dA 384 26.76 c.2.1.4,c.23.12.2 77774,77775 3c85A 183 27.27 1id1A 153 27.88 c.2.1.9 62286 2o7sA 523 28.38 1mldA 314 28.44 c.2.1.5,d.162.1.1 30122,42089 2nqtA 352 29.34 1lc0A 294 29.69 c.2.1.3,d.81.1.4 73823,73824 1ys4A 354 30.56 1y1pA 342 31.52 c.2.1.2 122550 2c29D 337 31.81 1o6zA 303 33.11 c.2.1.5,d.162.1.1 81107,81108 1yqdA 366 33.49 1sb8A 352 36.49 c.2.1.2 105410 1iukA 140 37.04 c.2.1.8 83712 2fk8A 318 37.64 c.66.1.18 133648 2d59A 144 38.69 c.2.1.8 131266 2cmdA 312 38.96 c.2.1.5,d.162.1.1 30135,42102 1q7gA 359 39.11 c.2.1.3,d.81.1.2 96038,96039 1hdoA 206 39.12 c.2.1.2 60965 1luaA 287 41.47 c.2.1.7,c.58.1.4 78216,78217 4uagA 437 42.57 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2cmd 312 42.70 2gn4A 344 44.05 2b69A 343 44.08 c.2.1.2 127974 1fl2A 310 44.54 c.3.1.5,c.3.1.5 59869,59870 1ebfA 358 45.67 c.2.1.3,d.81.1.2 30033,39948 1lluA 342 45.85 b.35.1.2,c.2.1.1 91064,91065 1nhsA 447 46.01 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2pzmA 330 46.21 2exxA 306 46.39 3c8mA 331 47.17 2cf5A 357 48.44 2gasA 307 48.87 1uufA 369 49.31 b.35.1.2,c.2.1.1 100006,100007 1yxmA 303 51.67 c.2.1.2 124192 1nhpA 447 52.16 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1b7gO 340 54.57 c.2.1.3,d.81.1.1 29992,39907 2czcA 334 54.61 d.81.1.1 131044 2ozpA 345 54.68 2a35A 215 55.80 c.2.1.2 126072 2gptA 523 56.72 1kyqA 274 56.73 c.2.1.11,e.37.1.1 73281,73282 1ri5A 298 58.32 c.66.1.34 97502 2yqzA 263 58.76 1y8qA 346 59.44 1i2cA 404 59.75 c.2.1.2 83666 1oc2A 348 60.16 c.2.1.2 92765 2blnA 305 63.70 b.46.1.1,c.65.1.1 128734,128735 1y7tA 327 65.12 c.2.1.5,d.162.1.1 122718,122719 1xu9A 286 65.54 c.2.1.2 116052 1jw9B 249 66.93 c.111.1.1 67377 1xg5A 279 69.38 c.2.1.2 115277 2cduA 452 69.54 2bllA 345 70.11 c.2.1.2 128733 2gdzA 267 70.16 c.2.1.2 135043 2pk3A 321 72.19 1c1dA 355 72.53 c.2.1.7,c.58.1.1 30270,33918 1t4bA 367 78.43 c.2.1.3,d.81.1.1 106406,106407 1wmaA 276 80.22 c.2.1.2 121042 3cc8A 230 82.78 1kpgA 287 83.44 c.66.1.18 68735 2z1mA 345 83.92 2gqwA 408 87.43 1z7bA 358 87.72 c.2.1.2 124599 1eq2A 310 88.58 c.2.1.2 29814 2dm6A 333 89.87 b.35.1.2,c.2.1.1 131567,131568