# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000318 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000432 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000493 1yqgA 263 0.000623 1yb4A 295 0.000755 2h78A 302 0.000977 2cvzA 289 0.001007 a.100.1.1,c.2.1.6 130890,130891 2pgd 482 0.001147 2graA 277 0.001196 2p4qA 497 0.001226 2rcyA 262 0.001453 2pgdA 482 0.001562 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.002930 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.003104 2ew2A 316 0.003640 2dpoA 319 0.003686 1mv8A 436 0.004026 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1np3A 338 0.005012 a.100.1.2,c.2.1.6 85946,85947 2o3jA 481 0.005747 2pv7A 298 0.006385 2i76A 276 0.006719 1qmgA 524 0.007018 a.100.1.2,c.2.1.6 18785,30182 1evyA 366 0.007143 a.100.1.6,c.2.1.6 18811,30215 2g5cA 281 0.008085 a.100.1.12,c.2.1.6 134646,134647 1bg6A 359 0.009539 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.009550 1yrlA 491 0.01120 1z82A 335 0.01156 1i36A 264 0.01189 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 0.01221 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 0.01725 a.100.1.6,c.2.1.6 112775,112776 1f0yA 302 0.01859 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 0.01953 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1bg6 359 0.01967 1dljA 402 0.02861 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2qytA 317 0.02994 1zejA 293 0.04260 1zcjA 463 0.04904 1jayA 212 0.07119 c.2.1.6 66478 1qv9A 283 0.1639 c.127.1.1 96356 1vjtA 483 0.6010 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 0.6642 c.2.1.5,d.162.1.2 86760,86761 2axqA 467 0.6985 1guzA 310 0.9282 c.2.1.5,d.162.1.1 65586,65587 2b0jA 358 0.9468 a.100.1.11,c.2.1.6 127639,127640 1s6yA 450 1.192 c.2.1.5,d.162.1.2 105314,105315 1gdhA 320 1.552 c.2.1.4,c.23.12.1 30095,31355 1hyhA 309 1.655 c.2.1.5,d.162.1.1 30150,42117 2nacA 393 1.710 c.2.1.4,c.23.12.1 30088,31348 1ygyA 529 1.830 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1pzgA 331 1.900 c.2.1.5,d.162.1.1 95425,95426 1lldA 319 1.922 c.2.1.5,d.162.1.1 30177,42144 2fssA 365 1.936 2j6iA 364 1.969 1t2dA 322 2.034 c.2.1.5,d.162.1.1 99084,99085 1f06A 320 2.076 c.2.1.3,d.81.1.3 59556,59557 2dbqA 334 2.417 1mx3A 347 2.654 c.2.1.4,c.23.12.1 79638,79639 1ez4A 318 2.659 c.2.1.5,d.162.1.1 64917,64918 1j4aA 333 2.695 c.2.1.4,c.23.12.1 71502,71503 2eklA 313 2.699 1wwkA 307 2.741 1li4A 432 2.833 c.2.1.4,c.23.12.3 84616,84617 2nvwA 479 2.845 c.2.1.3,d.81.1.5 138665,138666 2ewdA 317 3.051 1xdwA 331 3.129 1xeaA 323 3.191 c.2.1.3,d.81.1.5 109572,109573 1x7dA 350 3.224 c.2.1.13 114927 1dxy 333 3.232 1gpjA 404 3.391 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1lssA 140 3.456 c.2.1.9 74246 1v8bA 479 3.477 c.2.1.4,c.23.12.3 113564,113565 2q4eA 362 3.571 2gcgA 330 3.572 2ho3A 325 3.572 6ldhA 329 3.658 c.2.1.5,d.162.1.1 30161,42128 1up7A 417 3.722 c.2.1.5,d.162.1.2 113374,113375 1omoA 322 3.731 c.2.1.13 104017 1u8xX 472 3.797 c.2.1.5,d.162.1.2 107741,107742 2p2sA 336 3.862 2v7pA 310 3.959 2i6tA 303 4.131 2pi1A 334 4.171 1sc6A 404 4.186 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxyA 333 4.295 c.2.1.4,c.23.12.1 30094,31354 2cukA 311 4.305 1tltA 319 4.375 c.2.1.3,d.81.1.5 107135,107136 1h6dA 433 4.435 c.2.1.3,d.81.1.5 65656,65657 2o4cA 380 4.722 1drwA 273 4.726 c.2.1.3,d.81.1.3 30057,39972 1a5zA 319 4.789 c.2.1.5,d.162.1.1 30181,42148 3bioA 304 4.796 3ceaA 346 5.084 2dc1A 236 5.183 2eggA 297 5.183 1drw 273 5.620 1uxjA 309 5.645 c.2.1.5,d.162.1.1 108112,108113 2o4uX 334 5.811 2g76A 335 5.972 1ff9A 450 6.053 c.2.1.3,d.81.1.2 30039,39954 2d0iA 333 6.222 1pjcA 361 6.554 c.2.1.4,c.23.12.2 30101,31361 3c1aA 315 6.745 2hk9A 275 7.086 2glxA 332 7.190 1p77A 272 7.280 c.2.1.7,c.58.1.5 94214,94215 1rydA 387 7.462 c.2.1.3,d.81.1.5 118801,118802 1qp8A 303 8.070 c.2.1.4,c.23.12.1 30092,31352 2g17A 337 8.461 c.2.1.3,d.81.1.1 134512,134513 1lsuA 147 8.707 c.2.1.9 74250 2nloA 302 8.742 2d5cA 263 9.671 1nvmB 312 10.04 c.2.1.3,d.81.1.1 86251,86252 2ixaA 444 10.09 2hjsA 340 10.17 c.2.1.3,d.81.1.1 136547,136548 1vknA 351 10.29 c.2.1.3,d.81.1.1 108676,108677 1zh8A 340 10.68 c.2.1.3,d.81.1.5 125077,125078 2r6jA 318 11.11 2g1uA 155 12.20 2vojA 371 12.36 1j5pA 253 12.75 d.81.1.3,c.2.1.3 71577,83092 1lehA 364 12.85 c.2.1.7,c.58.1.1 30268,33916 2vhxA 377 13.02 2hmvA 144 13.17 c.2.1.9 136615 2ejwA 332 13.62 1nvtA 287 13.79 c.2.1.7,c.58.1.5 86270,86271 2gz1A 366 13.91 c.2.1.3,d.81.1.1 135887,135888 1y81A 138 14.35 c.2.1.8 122731 2aefA 234 15.99 2r00A 336 16.10 1x13A 401 16.55 1nytA 271 17.31 c.2.1.7,c.58.1.5 86417,86418 2nqtA 352 17.90 1id1A 153 18.98 c.2.1.9 62286 3c85A 183 19.89 1npyA 271 20.38 c.2.1.7,c.58.1.5 85995,85996 2o7sA 523 20.85 2ph5A 480 20.86 2q49A 359 21.04 c.2.1.3,d.81.1.1 139831,139832 1yovA 537 21.21 c.111.1.2 123785 1mldA 314 21.59 c.2.1.5,d.162.1.1 30122,42089 1vi2A 300 21.92 c.2.1.7,c.58.1.5 100726,100727 2d59A 144 21.96 c.2.1.8 131266 1iukA 140 22.16 c.2.1.8 83712 1xgkA 352 23.22 c.2.1.2 115286 1ys4A 354 23.25 1l7dA 384 23.80 c.2.1.4,c.23.12.2 77774,77775 1q7gA 359 25.46 c.2.1.3,d.81.1.2 96038,96039 1hdoA 206 25.59 c.2.1.2 60965 2cmd 312 26.64 2fk8A 318 27.08 c.66.1.18 133648 1y1pA 342 27.08 c.2.1.2 122550 1o6zA 303 27.47 c.2.1.5,d.162.1.1 81107,81108 1lc0A 294 27.98 c.2.1.3,d.81.1.4 73823,73824 2cmdA 312 28.40 c.2.1.5,d.162.1.1 30135,42102 1ebfA 358 28.41 c.2.1.3,d.81.1.2 30033,39948 1sb8A 352 28.76 c.2.1.2 105410 2c29D 337 30.26 1yqdA 366 30.44 2gn4A 344 30.67 4uagA 437 31.31 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2cf5A 357 31.45 2b69A 343 35.93 c.2.1.2 127974 2pzmA 330 38.84 1luaA 287 39.48 c.2.1.7,c.58.1.4 78216,78217 1lluA 342 40.93 b.35.1.2,c.2.1.1 91064,91065 1fl2A 310 42.31 c.3.1.5,c.3.1.5 59869,59870 3c8mA 331 42.34 2gptA 523 42.89 2exxA 306 43.05 1nhsA 447 43.42 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2czcA 334 43.49 d.81.1.1 131044 2ozpA 345 43.49 2a35A 215 43.69 c.2.1.2 126072 1uufA 369 45.27 b.35.1.2,c.2.1.1 100006,100007 1ri5A 298 45.36 c.66.1.34 97502 1b7gO 340 45.82 c.2.1.3,d.81.1.1 29992,39907 1nhpA 447 45.87 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2gasA 307 46.89 1i2cA 404 46.96 c.2.1.2 83666 2blnA 305 50.20 b.46.1.1,c.65.1.1 128734,128735 1kyqA 274 50.55 c.2.1.11,e.37.1.1 73281,73282 1oc2A 348 51.13 c.2.1.2 92765 1y7tA 327 52.08 c.2.1.5,d.162.1.1 122718,122719 2pk3A 321 52.25 2cduA 452 53.71 3cc8A 230 54.59 1c1dA 355 54.64 c.2.1.7,c.58.1.1 30270,33918 1y8qA 346 55.21 1kpgA 287 56.35 c.66.1.18 68735 2yqzA 263 56.43 1t4bA 367 58.67 c.2.1.3,d.81.1.1 106406,106407 1yxmA 303 59.90 c.2.1.2 124192 2bllA 345 60.56 c.2.1.2 128733 1bdmA 327 63.53 c.2.1.5,d.162.1.1 30137,42104 1xu9A 286 64.22 c.2.1.2 116052 2gqwA 408 65.49 1jw9B 249 66.01 c.111.1.1 67377 2b9eA 303 67.75 c.66.1.38 128124 1xg5A 279 67.86 c.2.1.2 115277 1orrA 347 67.91 c.2.1.2 93460 2p4hX 322 67.94 1z7bA 358 68.42 c.2.1.2 124599 2q1sA 377 70.01 1wmaA 276 72.45 c.2.1.2 121042 2z1mA 345 74.47 1l1eA 287 75.33 c.66.1.18 73454 2gdzA 267 75.38 c.2.1.2 135043 1xtpA 254 77.28 c.66.1.42 116031 2dm6A 333 81.87 b.35.1.2,c.2.1.1 131567,131568 2bkaA 242 82.25 c.2.1.2 128666 1vl5A 260 82.50 c.66.1.41 108720 2p5yA 311 83.05 1xxlA 239 83.37 c.66.1.41 116203 1b6rA 355 84.50 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1rkxA 357 84.55 c.2.1.2 97631 1z45A 699 85.01 b.30.5.4,c.2.1.2 124427,124428 1xq6A 253 88.36 c.2.1.2 115829 2q46A 253 88.44 c.2.1.2 139825 1q1rA 431 88.53 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1w4xA 542 89.95 c.3.1.5,c.3.1.5 109171,109172