# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.005136 a.100.1.1,c.2.1.6 113951,113952 1yb4A 295 0.008020 2h78A 302 0.009160 2pgd 482 0.01206 2p4qA 497 0.01286 2izzA 322 0.01351 2cvzA 289 0.01477 a.100.1.1,c.2.1.6 130890,130891 2pgdA 482 0.01481 a.100.1.1,c.2.1.6 18778,30190 2ahrA 259 0.01892 a.100.1.10,c.2.1.6 126775,126776 1evyA 366 0.02193 a.100.1.6,c.2.1.6 18811,30215 1yqgA 263 0.02304 2ew2A 316 0.03007 2graA 277 0.03401 2rcyA 262 0.03693 2f1kA 279 0.03752 a.100.1.12,c.2.1.6 132772,132773 1x0vA 354 0.04955 2o3jA 481 0.05913 1ks9A 291 0.06093 a.100.1.7,c.2.1.6 68857,68858 1bg6A 359 0.06918 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.08023 1bg6 359 0.08448 1z82A 335 0.08839 1txgA 335 0.08900 a.100.1.6,c.2.1.6 112775,112776 2pv7A 298 0.09241 1np3A 338 0.09382 a.100.1.2,c.2.1.6 85946,85947 1f0yA 302 0.09897 a.100.1.3,c.2.1.6 18793,30197 3c24A 286 0.1019 1yrlA 491 0.1073 1dliA 402 0.1268 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2qytA 317 0.1278 2g5cA 281 0.1279 a.100.1.12,c.2.1.6 134646,134647 1i36A 264 0.1343 a.100.1.8,c.2.1.6 71108,71109 1mv8A 436 0.1579 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2i76A 276 0.1802 1dljA 402 0.2251 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1qmgA 524 0.2348 a.100.1.2,c.2.1.6 18785,30182 1zcjA 463 0.3108 1zejA 293 0.3869 1jayA 212 0.5409 c.2.1.6 66478 2axqA 467 1.945 1qv9A 283 2.848 c.127.1.1 96356 1gdhA 320 4.117 c.2.1.4,c.23.12.1 30095,31355 1ygyA 529 4.141 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1obbA 480 4.338 c.2.1.5,d.162.1.2 86760,86761 1pzgA 331 4.475 c.2.1.5,d.162.1.1 95425,95426 1li4A 432 4.551 c.2.1.4,c.23.12.3 84616,84617 1mx3A 347 4.832 c.2.1.4,c.23.12.1 79638,79639 1guzA 310 4.916 c.2.1.5,d.162.1.1 65586,65587 2dbqA 334 4.995 2nvwA 479 5.158 c.2.1.3,d.81.1.5 138665,138666 1x7dA 350 5.213 c.2.1.13 114927 2fssA 365 5.238 1dxy 333 5.306 1xdwA 331 5.375 2q4eA 362 5.467 2gcgA 330 5.539 1omoA 322 5.594 c.2.1.13 104017 2o4uX 334 5.972 2p2sA 336 5.999 1f06A 320 6.062 c.2.1.3,d.81.1.3 59556,59557 1drw 273 6.124 3ceaA 346 6.218 1h6dA 433 6.308 c.2.1.3,d.81.1.5 65656,65657 2ewdA 317 6.472 1vjtA 483 6.600 c.2.1.5,d.162.1.2 100833,100834 2eklA 313 6.684 1hyhA 309 6.767 c.2.1.5,d.162.1.1 30150,42117 2glxA 332 6.788 2pi1A 334 7.215 1wwkA 307 7.264 1t2dA 322 7.322 c.2.1.5,d.162.1.1 99084,99085 2nacA 393 7.385 c.2.1.4,c.23.12.1 30088,31348 2g17A 337 7.567 c.2.1.3,d.81.1.1 134512,134513 1u8xX 472 7.585 c.2.1.5,d.162.1.2 107741,107742 1dxyA 333 7.656 c.2.1.4,c.23.12.1 30094,31354 1uxjA 309 7.748 c.2.1.5,d.162.1.1 108112,108113 1j4aA 333 7.852 c.2.1.4,c.23.12.1 71502,71503 2j6iA 364 7.938 1tltA 319 8.096 c.2.1.3,d.81.1.5 107135,107136 2d0iA 333 8.313 1sc6A 404 8.440 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1ez4A 318 8.466 c.2.1.5,d.162.1.1 64917,64918 1v8bA 479 8.494 c.2.1.4,c.23.12.3 113564,113565 6ldhA 329 8.697 c.2.1.5,d.162.1.1 30161,42128 2b0jA 358 8.866 a.100.1.11,c.2.1.6 127639,127640 1rydA 387 9.086 c.2.1.3,d.81.1.5 118801,118802 2ho3A 325 9.122 2g76A 335 9.136 2ejwA 332 9.423 2v7pA 310 9.714 2i6tA 303 10.10 2ixaA 444 10.45 1zh8A 340 10.63 c.2.1.3,d.81.1.5 125077,125078 1xeaA 323 10.69 c.2.1.3,d.81.1.5 109572,109573 1pjcA 361 10.72 c.2.1.4,c.23.12.2 30101,31361 3c1aA 315 11.00 2eggA 297 11.17 2cukA 311 11.29 1qp8A 303 11.58 c.2.1.4,c.23.12.1 30092,31352 1drwA 273 11.58 c.2.1.3,d.81.1.3 30057,39972 1lldA 319 11.62 c.2.1.5,d.162.1.1 30177,42144 1up7A 417 11.77 c.2.1.5,d.162.1.2 113374,113375 2dc1A 236 11.87 2vojA 371 12.36 2o4cA 380 12.76 2vhxA 377 13.30 1s6yA 450 13.38 c.2.1.5,d.162.1.2 105314,105315 1nvmB 312 13.58 c.2.1.3,d.81.1.1 86251,86252 1gpjA 404 13.75 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3bioA 304 14.24 1nytA 271 14.39 c.2.1.7,c.58.1.5 86417,86418 2hk9A 275 14.53 2r6jA 318 14.92 1p77A 272 15.20 c.2.1.7,c.58.1.5 94214,94215 2nloA 302 15.41 1ff9A 450 15.81 c.2.1.3,d.81.1.2 30039,39954 2q49A 359 18.32 c.2.1.3,d.81.1.1 139831,139832 2hjsA 340 19.05 c.2.1.3,d.81.1.1 136547,136548 2d5cA 263 19.91 2ph5A 480 22.12 1a5zA 319 22.19 c.2.1.5,d.162.1.1 30181,42148 2nqtA 352 22.27 1lehA 364 22.27 c.2.1.7,c.58.1.1 30268,33916 1x13A 401 22.28 1ys4A 354 22.76 2r00A 336 23.47 1j5pA 253 23.59 d.81.1.3,c.2.1.3 71577,83092 1lssA 140 23.60 c.2.1.9 74246 1vknA 351 23.90 c.2.1.3,d.81.1.1 108676,108677 2pzmA 330 24.61 1luaA 287 25.99 c.2.1.7,c.58.1.4 78216,78217 1vi2A 300 26.26 c.2.1.7,c.58.1.5 100726,100727 1xgkA 352 26.33 c.2.1.2 115286 1q7gA 359 26.52 c.2.1.3,d.81.1.2 96038,96039 1nvtA 287 27.85 c.2.1.7,c.58.1.5 86270,86271 1z7bA 358 27.96 c.2.1.2 124599 2gasA 307 30.18 2gz1A 366 30.62 c.2.1.3,d.81.1.1 135887,135888 1l7dA 384 31.18 c.2.1.4,c.23.12.2 77774,77775 2cmd 312 36.03 2bllA 345 36.18 c.2.1.2 128733 1mldA 314 37.15 c.2.1.5,d.162.1.1 30122,42089 2c29D 337 37.70 1npyA 271 38.46 c.2.1.7,c.58.1.5 85995,85996 1lc0A 294 39.44 c.2.1.3,d.81.1.4 73823,73824 1o6zA 303 39.72 c.2.1.5,d.162.1.1 81107,81108 2o7sA 523 41.23 2cmdA 312 41.38 c.2.1.5,d.162.1.1 30135,42102 2g1uA 155 41.91 1sb8A 352 42.91 c.2.1.2 105410 2gn4A 344 43.25 2exxA 306 43.57 1y1pA 342 44.02 c.2.1.2 122550 1lsuA 147 50.75 c.2.1.9 74250 2p4hX 322 51.69 1b7gO 340 53.62 c.2.1.3,d.81.1.1 29992,39907 1m6iA 493 54.76 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2pk3A 321 56.14 1vl5A 260 56.17 c.66.1.41 108720 2hmvA 144 56.38 c.2.1.9 136615 1yovA 537 56.97 c.111.1.2 123785 2ozpA 345 57.53 2gptA 523 59.14 2a35A 215 60.90 c.2.1.2 126072 1ebfA 358 60.97 c.2.1.3,d.81.1.2 30033,39948 2yyyA 343 61.16 2q1sA 377 62.02 2aefA 234 63.28 2czcA 334 63.99 d.81.1.1 131044 2c5aA 379 64.21 c.2.1.2 129894 3grs 478 64.32 1fl2A 310 68.77 c.3.1.5,c.3.1.5 59869,59870 1yxmA 303 72.44 c.2.1.2 124192 2bkaA 242 72.60 c.2.1.2 128666 3c85A 183 73.00 1c1dA 355 73.61 c.2.1.7,c.58.1.1 30270,33918 1w4xA 542 74.24 c.3.1.5,c.3.1.5 109171,109172 1xu9A 286 74.68 c.2.1.2 116052 2p5yA 311 75.29 1id1A 153 76.24 c.2.1.9 62286 2z1mA 345 76.75 1y8qA 346 77.24 2gdzA 267 78.96 c.2.1.2 135043 2cf5A 357 79.36 1wmaA 276 80.93 c.2.1.2 121042 3c8mA 331 84.12 1q1rA 431 85.06 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1bdb 277 85.21 3grsA 478 86.25 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1bdmA 327 87.04 c.2.1.5,d.162.1.1 30137,42104 1mo9A 523 88.19 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343