# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.004833 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.006126 2ahrA 259 0.007988 a.100.1.10,c.2.1.6 126775,126776 1yb4A 295 0.008059 1yqgA 263 0.008081 2pgd 482 0.008154 2p4qA 497 0.009872 2h78A 302 0.01032 2cvzA 289 0.01262 a.100.1.1,c.2.1.6 130890,130891 2pgdA 482 0.01489 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.01672 2rcyA 262 0.01772 2f1kA 279 0.02297 a.100.1.12,c.2.1.6 132772,132773 2dpoA 319 0.03811 1evyA 366 0.03843 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 0.03927 1x0vA 354 0.04405 2i76A 276 0.05231 3c24A 286 0.05428 2pv7A 298 0.05678 2o3jA 481 0.06107 1ks9A 291 0.06219 a.100.1.7,c.2.1.6 68857,68858 1qmgA 524 0.06326 a.100.1.2,c.2.1.6 18785,30182 1z82A 335 0.06364 1np3A 338 0.06624 a.100.1.2,c.2.1.6 85946,85947 1bg6A 359 0.07038 a.100.1.5,c.2.1.6 18810,30214 1mv8A 436 0.07289 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2g5cA 281 0.07564 a.100.1.12,c.2.1.6 134646,134647 1txgA 335 0.08643 a.100.1.6,c.2.1.6 112775,112776 1bg6 359 0.08647 1yrlA 491 0.09042 1f0yA 302 0.1140 a.100.1.3,c.2.1.6 18793,30197 1dljA 402 0.1146 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 0.1204 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1i36A 264 0.1265 a.100.1.8,c.2.1.6 71108,71109 2qytA 317 0.1446 1zcjA 463 0.2723 1zejA 293 0.3413 1jayA 212 0.5115 c.2.1.6 66478 1qv9A 283 1.200 c.127.1.1 96356 2axqA 467 2.038 1guzA 310 2.882 c.2.1.5,d.162.1.1 65586,65587 1vjtA 483 3.368 c.2.1.5,d.162.1.2 100833,100834 2ewdA 317 3.511 1obbA 480 3.595 c.2.1.5,d.162.1.2 86760,86761 1lldA 319 3.724 c.2.1.5,d.162.1.1 30177,42144 1hyhA 309 3.807 c.2.1.5,d.162.1.1 30150,42117 1x7dA 350 4.462 c.2.1.13 114927 1f06A 320 4.541 c.2.1.3,d.81.1.3 59556,59557 1s6yA 450 4.662 c.2.1.5,d.162.1.2 105314,105315 1pzgA 331 4.724 c.2.1.5,d.162.1.1 95425,95426 1ygyA 529 5.225 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1uxjA 309 5.332 c.2.1.5,d.162.1.1 108112,108113 2j6iA 364 5.383 1t2dA 322 5.731 c.2.1.5,d.162.1.1 99084,99085 2fssA 365 5.826 2b0jA 358 5.990 a.100.1.11,c.2.1.6 127639,127640 1mx3A 347 6.311 c.2.1.4,c.23.12.1 79638,79639 2o4uX 334 6.381 6ldhA 329 6.641 c.2.1.5,d.162.1.1 30161,42128 1u8xX 472 6.727 c.2.1.5,d.162.1.2 107741,107742 1omoA 322 6.868 c.2.1.13 104017 1up7A 417 6.890 c.2.1.5,d.162.1.2 113374,113375 2q4eA 362 6.891 2eklA 313 7.022 1gdhA 320 7.073 c.2.1.4,c.23.12.1 30095,31355 2gcgA 330 7.097 2dbqA 334 7.152 2i6tA 303 7.419 2p2sA 336 7.571 1dxy 333 8.093 1li4A 432 8.162 c.2.1.4,c.23.12.3 84616,84617 1wwkA 307 8.853 1tltA 319 8.874 c.2.1.3,d.81.1.5 107135,107136 1drw 273 9.180 3ceaA 346 9.520 2eggA 297 9.640 1ez4A 318 9.660 c.2.1.5,d.162.1.1 64917,64918 1h6dA 433 9.676 c.2.1.3,d.81.1.5 65656,65657 1xdwA 331 9.870 2pi1A 334 10.08 2g76A 335 10.43 2nvwA 479 10.89 c.2.1.3,d.81.1.5 138665,138666 1a5zA 319 10.92 c.2.1.5,d.162.1.1 30181,42148 2dc1A 236 10.96 2nacA 393 11.17 c.2.1.4,c.23.12.1 30088,31348 1xeaA 323 11.28 c.2.1.3,d.81.1.5 109572,109573 1pjcA 361 11.57 c.2.1.4,c.23.12.2 30101,31361 2d0iA 333 11.81 1v8bA 479 11.88 c.2.1.4,c.23.12.3 113564,113565 2v7pA 310 12.11 3c1aA 315 12.14 1j4aA 333 12.32 c.2.1.4,c.23.12.1 71502,71503 2glxA 332 12.48 1dxyA 333 12.52 c.2.1.4,c.23.12.1 30094,31354 1drwA 273 12.84 c.2.1.3,d.81.1.3 30057,39972 2o4cA 380 13.00 1gpjA 404 13.09 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3bioA 304 13.28 2hk9A 275 13.38 2ho3A 325 13.73 2r6jA 318 13.84 1rydA 387 13.91 c.2.1.3,d.81.1.5 118801,118802 1ff9A 450 14.39 c.2.1.3,d.81.1.2 30039,39954 1sc6A 404 14.87 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1p77A 272 14.88 c.2.1.7,c.58.1.5 94214,94215 1nvmB 312 15.23 c.2.1.3,d.81.1.1 86251,86252 2hjsA 340 15.29 c.2.1.3,d.81.1.1 136547,136548 2vojA 371 15.38 2ixaA 444 15.39 2cukA 311 15.73 2vhxA 377 16.47 2d5cA 263 16.51 1j5pA 253 16.59 d.81.1.3,c.2.1.3 71577,83092 2g17A 337 16.74 c.2.1.3,d.81.1.1 134512,134513 1qp8A 303 17.30 c.2.1.4,c.23.12.1 30092,31352 1zh8A 340 17.34 c.2.1.3,d.81.1.5 125077,125078 1lssA 140 17.82 c.2.1.9 74246 1nytA 271 18.25 c.2.1.7,c.58.1.5 86417,86418 1vi2A 300 19.12 c.2.1.7,c.58.1.5 100726,100727 2r00A 336 19.72 1lehA 364 20.43 c.2.1.7,c.58.1.1 30268,33916 2ejwA 332 20.60 1vknA 351 21.79 c.2.1.3,d.81.1.1 108676,108677 2nloA 302 21.98 1nvtA 287 22.92 c.2.1.7,c.58.1.5 86270,86271 1z7bA 358 24.96 c.2.1.2 124599 1luaA 287 25.80 c.2.1.7,c.58.1.4 78216,78217 2ph5A 480 25.89 2gz1A 366 26.53 c.2.1.3,d.81.1.1 135887,135888 1y1pA 342 27.52 c.2.1.2 122550 1xgkA 352 27.83 c.2.1.2 115286 2q49A 359 27.84 c.2.1.3,d.81.1.1 139831,139832 2nqtA 352 28.88 2b69A 343 29.92 c.2.1.2 127974 2aefA 234 30.56 1x13A 401 30.80 1mldA 314 31.37 c.2.1.5,d.162.1.1 30122,42089 2bllA 345 32.63 c.2.1.2 128733 1lsuA 147 32.64 c.2.1.9 74250 2cmd 312 33.55 1o6zA 303 33.89 c.2.1.5,d.162.1.1 81107,81108 1ys4A 354 34.67 1lc0A 294 34.82 c.2.1.3,d.81.1.4 73823,73824 2hmvA 144 34.90 c.2.1.9 136615 1q7gA 359 35.49 c.2.1.3,d.81.1.2 96038,96039 2gn4A 344 36.53 2cmdA 312 36.66 c.2.1.5,d.162.1.1 30135,42102 1wmaA 276 37.35 c.2.1.2 121042 2pzmA 330 39.69 2o7sA 523 40.00 1yovA 537 40.01 c.111.1.2 123785 1hdoA 206 41.61 c.2.1.2 60965 1y81A 138 41.92 c.2.1.8 122731 1oc2A 348 42.40 c.2.1.2 92765 1c1dA 355 42.67 c.2.1.7,c.58.1.1 30270,33918 1sb8A 352 42.88 c.2.1.2 105410 3c8mA 331 43.36 1npyA 271 46.53 c.2.1.7,c.58.1.5 85995,85996 1l7dA 384 49.22 c.2.1.4,c.23.12.2 77774,77775 2g1uA 155 49.84 2fk8A 318 51.89 c.66.1.18 133648 1wvgA 359 52.05 c.2.1.2 121339 1id1A 153 52.63 c.2.1.9 62286 2gasA 307 52.66 2yquA 455 53.96 2q1sA 377 55.57 1rkxA 357 56.17 c.2.1.2 97631 2gqwA 408 57.07 2czcA 334 59.42 d.81.1.1 131044 2p4hX 322 59.65 1xu9A 286 63.14 c.2.1.2 116052 2d59A 144 63.82 c.2.1.8 131266 2exxA 306 65.21 1yxmA 303 66.03 c.2.1.2 124192 2z1mA 345 66.25 1y8qA 346 66.81 1fl2A 310 67.05 c.3.1.5,c.3.1.5 59869,59870 2gdzA 267 68.40 c.2.1.2 135043 2pk3A 321 69.44 2ozpA 345 69.87 3c85A 183 71.74 2q46A 253 72.04 c.2.1.2 139825 2c29D 337 72.75 2yyyA 343 74.01 2cduA 452 74.22 1yqdA 366 76.66 1q1rA 431 76.89 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1iukA 140 77.46 c.2.1.8 83712 1t4bA 367 78.03 c.2.1.3,d.81.1.1 106406,106407 2p5yA 311 78.07 2gptA 523 78.10 2bkaA 242 82.44 c.2.1.2 128666 1lvlA 458 87.58 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1jw9B 249 88.07 c.111.1.1 67377