# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 1.247 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 1.554 a.100.1.10,c.2.1.6 126775,126776 2h78A 302 1.649 2izzA 322 1.671 2p4qA 497 1.688 1yqgA 263 1.921 1evyA 366 2.098 a.100.1.6,c.2.1.6 18811,30215 1yb4A 295 2.149 2cvzA 289 2.167 a.100.1.1,c.2.1.6 130890,130891 2ew2A 316 2.188 2f1kA 279 2.220 a.100.1.12,c.2.1.6 132772,132773 1f0yA 302 2.484 a.100.1.3,c.2.1.6 18793,30197 2graA 277 2.966 2rcyA 262 2.975 1x0vA 354 2.977 3c24A 286 3.071 2pgd 482 3.099 2g5cA 281 3.145 a.100.1.12,c.2.1.6 134646,134647 2dpoA 319 3.302 1bg6A 359 3.349 a.100.1.5,c.2.1.6 18810,30214 2pgdA 482 3.459 a.100.1.1,c.2.1.6 18778,30190 1yrlA 491 3.565 1np3A 338 4.573 a.100.1.2,c.2.1.6 85946,85947 1z82A 335 4.828 1mv8A 436 5.006 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1bg6 359 5.136 1zcjA 463 5.358 1ks9A 291 5.372 a.100.1.7,c.2.1.6 68857,68858 2pv7A 298 5.598 1txgA 335 6.009 a.100.1.6,c.2.1.6 112775,112776 2qytA 317 6.069 1i36A 264 7.000 a.100.1.8,c.2.1.6 71108,71109 1zejA 293 7.996 2i76A 276 8.242 1qmgA 524 8.304 a.100.1.2,c.2.1.6 18785,30182 2o3jA 481 8.491 1dljA 402 8.775 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 9.915 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1jayA 212 11.81 c.2.1.6 66478 3ceaA 346 20.14 1ez4A 318 21.15 c.2.1.5,d.162.1.1 64917,64918 2nvwA 479 21.16 c.2.1.3,d.81.1.5 138665,138666 2axqA 467 21.28 1pzgA 331 21.94 c.2.1.5,d.162.1.1 95425,95426 1uxjA 309 24.37 c.2.1.5,d.162.1.1 108112,108113 2o4uX 334 24.49 2v7pA 310 25.03 2i6tA 303 26.41 1up7A 417 26.51 c.2.1.5,d.162.1.2 113374,113375 1lldA 319 27.19 c.2.1.5,d.162.1.1 30177,42144 1t2dA 322 27.55 c.2.1.5,d.162.1.1 99084,99085 1nvmB 312 28.09 c.2.1.3,d.81.1.1 86251,86252 1a5zA 319 28.29 c.2.1.5,d.162.1.1 30181,42148 1s6yA 450 28.70 c.2.1.5,d.162.1.2 105314,105315 1u8xX 472 29.70 c.2.1.5,d.162.1.2 107741,107742 2q4eA 362 30.31 2ewdA 317 30.46 1hyhA 309 31.73 c.2.1.5,d.162.1.1 30150,42117 6ldhA 329 32.97 c.2.1.5,d.162.1.1 30161,42128 1obbA 480 34.89 c.2.1.5,d.162.1.2 86760,86761 1v8bA 479 35.39 c.2.1.4,c.23.12.3 113564,113565 1h6dA 433 35.56 c.2.1.3,d.81.1.5 65656,65657 2glxA 332 35.66 1vjtA 483 39.30 c.2.1.5,d.162.1.2 100833,100834 2hk9A 275 39.97 2yyyA 343 41.51 1guzA 310 43.00 c.2.1.5,d.162.1.1 65586,65587 2ho3A 325 43.15 1nytA 271 43.27 c.2.1.7,c.58.1.5 86417,86418 1li4A 432 43.29 c.2.1.4,c.23.12.3 84616,84617 1ff9A 450 45.60 c.2.1.3,d.81.1.2 30039,39954 2nacA 393 45.71 c.2.1.4,c.23.12.1 30088,31348 1bdmA 327 45.78 c.2.1.5,d.162.1.1 30137,42104 1xeaA 323 46.12 c.2.1.3,d.81.1.5 109572,109573 1zh8A 340 46.15 c.2.1.3,d.81.1.5 125077,125078 1y7tA 327 46.37 c.2.1.5,d.162.1.1 122718,122719 2cmdA 312 48.08 c.2.1.5,d.162.1.1 30135,42102 1rydA 387 50.86 c.2.1.3,d.81.1.5 118801,118802 2ejwA 332 51.88 1ygyA 529 52.62 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2hjsA 340 54.31 c.2.1.3,d.81.1.1 136547,136548 1o6zA 303 57.96 c.2.1.5,d.162.1.1 81107,81108 2cmd 312 58.96 1mldA 314 58.96 c.2.1.5,d.162.1.1 30122,42089 1xgkA 352 59.59 c.2.1.2 115286 1wwkA 307 61.14 2g76A 335 61.50 2d5cA 263 62.79 2gn4A 344 63.82 2b0jA 358 64.83 a.100.1.11,c.2.1.6 127639,127640 1x7dA 350 65.05 c.2.1.13 114927 2g17A 337 65.35 c.2.1.3,d.81.1.1 134512,134513 2exxA 306 67.44 2a4kA 263 67.50 c.2.1.2 126156 1c1dA 355 67.81 c.2.1.7,c.58.1.1 30270,33918 1mx3A 347 70.32 c.2.1.4,c.23.12.1 79638,79639 2fk8A 318 70.37 c.66.1.18 133648 1omoA 322 73.15 c.2.1.13 104017 1k0iA 394 73.23 c.3.1.2,d.16.1.2 67942,67943 2p2sA 336 74.82 1gdhA 320 76.25 c.2.1.4,c.23.12.1 30095,31355 2eklA 313 77.28 2o4cA 380 79.66 2eggA 297 80.43 1vknA 351 81.03 c.2.1.3,d.81.1.1 108676,108677 1drw 273 82.04 1lssA 140 82.73 c.2.1.9 74246 1lehA 364 82.81 c.2.1.7,c.58.1.1 30268,33916 1y1pA 342 85.73 c.2.1.2 122550 4uagA 437 85.89 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1b7gO 340 86.42 c.2.1.3,d.81.1.1 29992,39907 2fssA 365 87.17 2czcA 334 87.73 d.81.1.1 131044 3c1aA 315 88.93 2dbqA 334 89.40 1sc6A 404 89.86 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934