Best Alignments for T0393

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2pgdA	5.9766e-17	2pgdA/T0393-2pgdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2i76A	8.8784e-17	2i76A/T0393-2i76A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f1kA	1.0826e-16	2f1kA/T0393-2f1kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
2g5cA	1.8185e-15	2g5cA/T0393-2g5cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
2h78A	4.2385e-15	2h78A/T0393-2h78A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2izzA	4.2671e-15	2izzA/T0393-2izzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yb4A	4.4174e-15	1yb4A/T0393-1yb4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2graA	2.4890e-14	2graA/T0393-2graA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2p4qA	8.2043e-14	2p4qA/T0393-2p4qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cvzA	9.4177e-14	2cvzA/T0393-2cvzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2ahrA	9.4797e-14	2ahrA/T0393-2ahrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.10 c.2.1.6
1yqgA	4.9531e-13	1yqgA/T0393-1yqgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bg6	7.6080e-13	1bg6/T0393-1bg6-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rcyA	8.6382e-13	2rcyA/T0393-2rcyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1np3A	1.0727e-12	1np3A/T0393-1np3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.2 c.2.1.6
2pv7A	1.4142e-12	2pv7A/T0393-2pv7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qmgA	1.0913e-11	1qmgA/T0393-1qmgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.2 c.2.1.6
1vpdA	1.1196e-11	1vpdA/T0393-1vpdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
3c24A	7.4150e-11	3c24A/T0393-3c24A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1evyA	8.8447e-11	1evyA/T0393-1evyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.6 c.2.1.6

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001