# List of top-scoring protein chains for T0393.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 8.04e-14 a.100.1.1,c.2.1.6 113951,113952 3cumA 302 2.37e-13 2gf2A 296 2.86e-13 2i9pA 319 3.07e-13 1yb4A 295 2.72e-12 2uyyA 316 1.03e-11 2cvzA 289 3.12e-11 a.100.1.1,c.2.1.6 130890,130891 2izzA 322 5.39e-11 2graA 277 6.18e-11 2rcyA 262 6.25e-11 2gerA 321 6.68e-11 2ahrA 259 8.17e-10 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 9.18e-10 2iz1A 474 1.87e-06 2p4qA 497 1.90e-06 2iypA 473 1.96e-06 2iyoA 472 2.08e-06 2pgdA 482 5.54e-06 a.100.1.1,c.2.1.6 18778,30190 1pgjA 478 1.59e-05 a.100.1.1,c.2.1.6 18783,30195 2f1kA 279 0.000670 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 0.001188 a.100.1.12,c.2.1.6 134646,134647 3c24A 286 0.01319 1i36A 264 0.01420 a.100.1.8,c.2.1.6 71108,71109 2i76A 276 0.01773 1zejA 293 0.03990 2pv7A 298 0.1487 2ew2A 316 0.1522 2dbqA 334 0.2865 2gcgA 330 0.3818 2q50A 328 0.3819 1yrlA 491 0.4819 2b0jA 358 0.6620 a.100.1.11,c.2.1.6 127639,127640 1jayA 212 0.7560 c.2.1.6 66478 1x0vA 354 0.7794 1mv8A 436 1.019 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2d0iA 333 1.056 1wpqA 349 1.206 2ofpA 320 1.269 a.100.1.7,c.2.1.6 139052,139053 2hk8A 269 1.313 2hk9A 275 1.315 1bg6A 359 1.670 a.100.1.5,c.2.1.6 18810,30214 1np3A 338 1.865 a.100.1.2,c.2.1.6 85946,85947 1yonA 303 1.938 a.100.1.7,c.2.1.6 123780,123781 2j6iA 364 1.952 1ks9A 291 1.956 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 2.037 a.100.1.6,c.2.1.6 112775,112776 2fssA 365 2.046 1hkuA 358 2.148 c.2.1.4,c.23.12.1 83557,83558 1mx3A 347 2.305 c.2.1.4,c.23.12.1 79638,79639 2pi1A 334 2.434 1gpjA 404 3.159 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1j4aA 333 3.429 c.2.1.4,c.23.12.1 71502,71503 2rirA 300 3.487 2rafA 209 3.488 1j49A 333 3.882 c.2.1.4,c.23.12.1 71498,71499 2p9gA 410 4.110 c.2.1.4,c.23.12.1,d.58.18.1 139574,139575,139576 2dldA 337 4.120 c.2.1.4,c.23.12.1 30099,31359 2p9cA 410 4.351 c.2.1.4,c.23.12.1,d.58.18.1 139556,139557,139558 1wwkA 307 4.358 1evyA 366 4.464 a.100.1.6,c.2.1.6 18811,30215 2d5cA 263 4.996 1ybaA 410 5.682 c.2.1.4,c.23.12.1,d.58.18.1 122872,122873,122874 1psdA 409 5.686 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1wdkA 715 5.907 a.100.1.3,a.100.1.3,c.2.1.6,c.14.1.3 109250,109251,109252,109253 2o4cA 380 5.933 2i99A 312 6.079 2omeA 336 6.793 1zcjA 463 7.761 1lsoA 302 7.801 a.100.1.3,c.2.1.6 91120,91121 1il0A 302 7.889 a.100.1.3,c.2.1.6 66189,66190 2hmvA 144 8.189 c.2.1.9 136615 1f0yA 302 8.485 a.100.1.3,c.2.1.6 18793,30197 1f17A 310 8.704 a.100.1.3,c.2.1.6 18797,30201 1lsuA 147 8.852 c.2.1.9 74250 1lsjA 302 8.981 a.100.1.3,c.2.1.6 91116,91117 1m75A 302 9.032 a.100.1.3,c.2.1.6 91212,91213 2cvoA 366 9.382 c.2.1.3,d.81.1.1 130877,130878 1sc6A 404 9.544 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3hadA 308 10.13 a.100.1.3,c.2.1.6 18799,30203 1hyhA 309 11.22 c.2.1.5,d.162.1.1 30150,42117 1m76A 302 12.30 a.100.1.3,c.2.1.6 91216,91217 2eklA 313 13.07 1a5zA 319 13.09 c.2.1.5,d.162.1.1 30181,42148 2hdhA 293 13.35 a.100.1.3,c.2.1.6 18795,30199 1ygyA 529 14.01 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2vhxA 377 14.15 2vojA 371 14.26 2vhvA 377 14.79 1dxyA 333 15.52 c.2.1.4,c.23.12.1 30094,31354 2q49A 359 16.84 c.2.1.3,d.81.1.1 139831,139832 3hdhA 302 18.08 a.100.1.3,c.2.1.6 18805,30209 1xdwA 331 18.22 1v9lA 421 19.23 c.2.1.7,c.58.1.1 113583,113584 2cduA 452 19.59 2p4hX 322 22.13 1pjcA 361 22.53 c.2.1.4,c.23.12.2 30101,31361 1qp8A 303 22.73 c.2.1.4,c.23.12.1 30092,31352 2plaA 349 24.47 1jw9B 249 25.41 c.111.1.1 67377 1zh8A 340 25.48 c.2.1.3,d.81.1.5 125077,125078 2g82A 331 25.56 c.2.1.3,d.81.1.1 134746,134747 2dc1A 236 26.00 1j5pA 253 27.10 d.81.1.3,c.2.1.3 71577,83092 2bw0A 329 27.47 b.46.1.1,c.65.1.1 129303,129304 2axqA 467 32.29 1zud1 251 32.71 1zfnA 253 33.42 2qytA 317 33.77 2o3jA 481 34.55 3bioA 304 35.67 2o7sA 523 38.15 2q3eA 467 39.45 2ph5A 480 39.74 1ainA 314 40.57 a.65.1.1 18145 2czcA 334 40.62 d.81.1.1 131044 2csuA 457 41.77 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2ep5A 350 44.15 2vdcG 456 44.78 2r2gA 318 45.08 1h2hA 241 45.44 d.81.1.3,c.2.1.3 70861,83058 2r6jA 318 46.26 2cukA 311 47.45 1tltA 319 51.31 c.2.1.3,d.81.1.5 107135,107136 1yj8A 375 52.38 1k3tA 359 53.47 c.2.1.3,d.81.1.1 72022,72023 2gsdA 402 53.51 1ybqB 390 56.76 1vknA 351 56.91 c.2.1.3,d.81.1.1 108676,108677 1ybqA 390 57.70 1gdhA 320 58.99 c.2.1.4,c.23.12.1 30095,31355 2eggA 297 59.82 2v6bA 304 61.63 1onxA 390 61.95 b.92.1.7,c.1.9.13 87176,87177 2aqoA 390 62.06 1onwA 390 62.54 b.92.1.7,c.1.9.13 87172,87173 2aqvA 390 62.84 2c7vA 268 62.86 1omoA 322 63.75 c.2.1.13 104017 1vllA 334 63.90 c.2.1.13 108834 1z82A 335 64.31 1y81A 138 64.58 c.2.1.8 122731 2cf5A 357 64.82 1nytA 271 66.20 c.2.1.7,c.58.1.5 86417,86418 1lssA 140 66.53 c.2.1.9 74246 1f06A 320 67.43 c.2.1.3,d.81.1.3 59556,59557 1l9zH 438 69.42 i.8.1.1 73771 2g1uA 155 70.20 1vc2A 331 70.98 c.2.1.3,d.81.1.1 100555,100556 1b0aA 288 72.08 c.2.1.7,c.58.1.2 30286,33934 1qmgA 524 75.90 a.100.1.2,c.2.1.6 18785,30182 3cosA 381 78.38 1y1pA 342 81.14 c.2.1.2 122550 1ggaA 358 81.16 c.2.1.3,d.81.1.1 30002,39917 1pquA 371 83.76 c.2.1.3,d.81.1.1 104288,104289 1ps8A 371 85.43 c.2.1.3,d.81.1.1 104304,104305 2nacA 393 86.40 c.2.1.4,c.23.12.1 30088,31348 1dliA 402 87.99 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622