# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 2.41e-10 2h78A 302 2.98e-10 1vpdA 299 1.33e-09 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 1.38e-09 2ahrA 259 2.78e-09 a.100.1.10,c.2.1.6 126775,126776 2rcyA 262 2.87e-09 2izzA 322 3.58e-09 2f1kA 279 6.88e-09 a.100.1.12,c.2.1.6 132772,132773 1yqgA 263 9.66e-09 2pgdA 482 1.13e-08 a.100.1.1,c.2.1.6 18778,30190 2graA 277 1.15e-08 2cvzA 289 1.29e-08 a.100.1.1,c.2.1.6 130890,130891 2p4qA 497 1.43e-08 2g5cA 281 2.41e-08 a.100.1.12,c.2.1.6 134646,134647 2pv7A 298 2.89e-08 1np3A 338 1.14e-07 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 1.43e-07 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 1.92e-07 3c24A 286 4.47e-07 1i36A 264 9.62e-07 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 1.05e-06 1ks9A 291 1.96e-06 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 2.72e-06 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 3.65e-06 a.100.1.2,c.2.1.6 18785,30182 1yrlA 491 4.28e-06 1evyA 366 7.22e-06 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 7.91e-06 1zejA 293 1.02e-05 2o3jA 481 1.76e-05 1dljA 402 1.90e-05 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 2.44e-05 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 3.81e-05 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dliA 402 4.04e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 6.77e-05 1zcjA 463 0.000215 1jayA 212 0.000489 c.2.1.6 66478 2dpoA 319 0.004006 1bg6A 359 0.004108 a.100.1.5,c.2.1.6 18810,30214 1ff9A 450 0.007060 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.007797 2qytA 317 0.01757 2nacA 393 0.02476 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 0.04091 c.2.1.4,c.23.12.1 30095,31355 1tltA 319 0.07219 c.2.1.3,d.81.1.5 107135,107136 2b0jA 358 0.07715 a.100.1.11,c.2.1.6 127639,127640 2fssA 365 0.07883 1ldg 316 0.08758 1u8xX 472 0.09772 c.2.1.5,d.162.1.2 107741,107742 1t2dA 322 0.1133 c.2.1.5,d.162.1.1 99084,99085 2j6iA 364 0.1198 1wwkA 307 0.1216 1mx3A 347 0.1256 c.2.1.4,c.23.12.1 79638,79639 2hk9A 275 0.1340 1vllA 334 0.1393 c.2.1.13 108834 1j4aA 333 0.1466 c.2.1.4,c.23.12.1 71502,71503 1uxjA 309 0.1558 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 0.1584 c.2.1.5,d.162.1.1 99807,99808 2g76A 335 0.1652 1d4fA 431 0.1675 c.2.1.4,c.23.12.3 30110,31370 1psdA 409 0.1698 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1xwfA 431 0.1761 c.2.1.4,c.23.12.3 122392,122393 1omoA 322 0.1804 c.2.1.13 104017 1xdwA 331 0.1940 1lldA 319 0.1971 c.2.1.5,d.162.1.1 30177,42144 1gpjA 404 0.2475 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1li4A 432 0.2496 c.2.1.4,c.23.12.3 84616,84617 1x7dA 350 0.2742 c.2.1.13 114927 1pzgA 331 0.2995 c.2.1.5,d.162.1.1 95425,95426 1lssA 140 0.3377 c.2.1.9 74246 1dxy 333 0.3468 1up6A 416 0.3570 c.2.1.5,d.162.1.2 107976,107977 2dbqA 334 0.3831 1xeaA 323 0.4385 c.2.1.3,d.81.1.5 109572,109573 2o4cA 380 0.4506 2d0iA 333 0.4998 1v8bA 479 0.5298 c.2.1.4,c.23.12.3 113564,113565 2nvwA 479 0.6007 c.2.1.3,d.81.1.5 138665,138666 1sc6A 404 0.6013 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1guzA 310 0.7233 c.2.1.5,d.162.1.1 65586,65587 1up7A 417 0.7514 c.2.1.5,d.162.1.2 113374,113375 1ygyA 529 0.8345 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1f06A 320 0.8361 c.2.1.3,d.81.1.3 59556,59557 1nytA 271 0.8484 c.2.1.7,c.58.1.5 86417,86418 6ldhA 329 0.8858 c.2.1.5,d.162.1.1 30161,42128 1hyhA 309 0.9049 c.2.1.5,d.162.1.1 30150,42117 1obbA 480 0.9104 c.2.1.5,d.162.1.2 86760,86761 2pi1A 334 0.9135 2d5cA 263 0.9409 2i6tA 303 1.089 2gcgA 330 1.122 2ewdA 317 1.207 1dxyA 333 1.296 c.2.1.4,c.23.12.1 30094,31354 1qp8A 303 1.328 c.2.1.4,c.23.12.1 30092,31352 2eggA 297 1.443 1vjtA 483 1.486 c.2.1.5,d.162.1.2 100833,100834 2axqA 467 1.578 2eklA 313 1.632 1lehA 364 1.660 c.2.1.7,c.58.1.1 30268,33916 1qv9A 283 1.670 c.127.1.1 96356 1a5zA 319 1.777 c.2.1.5,d.162.1.1 30181,42148 1s6yA 450 1.904 c.2.1.5,d.162.1.2 105314,105315 1pjcA 361 1.979 c.2.1.4,c.23.12.2 30101,31361 1nvtA 287 2.036 c.2.1.7,c.58.1.5 86270,86271 2vhxA 377 2.056 2cukA 311 2.115 2nloA 302 2.227 1npyA 271 2.434 c.2.1.7,c.58.1.5 85995,85996 2d59A 144 2.564 c.2.1.8 131266 2hmvA 144 2.564 c.2.1.9 136615 1p77A 272 2.606 c.2.1.7,c.58.1.5 94214,94215 1iukA 140 2.872 c.2.1.8 83712 2v7pA 310 2.893 2vojA 371 3.096 1c1dA 355 3.118 c.2.1.7,c.58.1.1 30270,33918 1ez4A 318 3.435 c.2.1.5,d.162.1.1 64917,64918 1lsuA 147 3.764 c.2.1.9 74250 1gcuA 295 4.347 c.2.1.3,d.81.1.4 30063,39978 2glxA 332 4.454 1y81A 138 4.703 c.2.1.8 122731 3c85A 183 5.203 2g1uA 155 5.413 2ho3A 325 5.504 1a4iA 301 5.678 c.2.1.7,c.58.1.2 30278,33926 1vknA 351 6.265 c.2.1.3,d.81.1.1 108676,108677 1nvmB 312 6.580 c.2.1.3,d.81.1.1 86251,86252 2gptA 523 6.795 1l7dA 384 7.527 c.2.1.4,c.23.12.2 77774,77775 1hdoA 206 7.618 c.2.1.2 60965 1luaA 287 7.755 c.2.1.7,c.58.1.4 78216,78217 2o7sA 523 8.342 1ofgA 381 8.585 c.2.1.3,d.81.1.5 30064,39979 2cmdA 312 8.633 c.2.1.5,d.162.1.1 30135,42102 2g17A 337 8.783 c.2.1.3,d.81.1.1 134512,134513 2dc1A 236 8.799 2aefA 234 9.027 1drw 273 9.147 1scuA 288 9.429 c.2.1.8,c.23.4.1 30307,31135 2csuA 457 9.667 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1h6dA 433 10.30 c.2.1.3,d.81.1.5 65656,65657 3bioA 304 10.42 2czcA 334 10.64 d.81.1.1 131044 2q4eA 362 11.20 2nqtA 352 11.29 3ceaA 346 11.38 1drwA 273 11.53 c.2.1.3,d.81.1.3 30057,39972 2ph5A 480 11.62 2p2sA 336 12.59 1vi2A 300 12.72 c.2.1.7,c.58.1.5 100726,100727 1j5pA 253 13.52 d.81.1.3,c.2.1.3 71577,83092 2hjsA 340 14.17 c.2.1.3,d.81.1.1 136547,136548 1b0aA 288 14.48 c.2.1.7,c.58.1.2 30286,33934 2gz1A 366 16.67 c.2.1.3,d.81.1.1 135887,135888 1lc0A 294 18.22 c.2.1.3,d.81.1.4 73823,73824 2q49A 359 18.27 c.2.1.3,d.81.1.1 139831,139832 2ozpA 345 18.65 1qydA 313 18.76 c.2.1.2 96583 3c1aA 315 18.91 1xcbA 211 18.95 a.4.5.38,c.2.1.12 109552,109553 2z1nA 260 21.44 2r00A 336 22.76 2exxA 306 23.45 2v3aA 384 24.28 1k2wA 256 24.44 c.2.1.2 90927 1xq6A 253 25.37 c.2.1.2 115829 1x7gA 261 26.95 c.2.1.2 114929 1zud1 251 27.52 1jw9B 249 29.88 c.111.1.1 67377 1uufA 369 30.08 b.35.1.2,c.2.1.1 100006,100007 2b5wA 357 30.29 1x13A 401 30.87 1k6xA 352 31.31 c.2.1.2 68238 1rydA 387 31.70 c.2.1.3,d.81.1.5 118801,118802 1cf2O 337 32.92 c.2.1.3,d.81.1.1 29994,39909 2dt5A 211 33.03 a.4.5.38,c.2.1.12 131708,131709 1ydeA 270 33.23 c.2.1.2 122980 1pl8A 356 34.03 b.35.1.2,c.2.1.1 94878,94879 1yxmA 303 35.25 c.2.1.2 124192 1o6zA 303 35.51 c.2.1.5,d.162.1.1 81107,81108 1xkqA 280 35.69 c.2.1.2 115417 1pwxA 254 37.13 c.2.1.2 95262 1xhlA 297 37.38 c.2.1.2 109591 1hwxA 501 39.16 c.2.1.7,c.58.1.1 30250,33898 1pjqA 457 39.85 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1spxA 278 39.89 c.2.1.2 98958 1gegA 256 40.47 c.2.1.2 29888 1zmtA 254 41.18 c.2.1.2 125363 1xseA 295 41.54 c.2.1.2 115925 1b16A 254 41.67 c.2.1.2 29875 2o4uX 334 42.27 1e7wA 291 42.29 c.2.1.2 59373 2gdzA 267 42.29 c.2.1.2 135043 2pd6A 264 42.98 2bryA 497 44.58 2cf5A 357 44.67 1e3jA 352 45.66 b.35.1.2,c.2.1.1 24765,29781 1l9cA 389 45.70 c.3.1.2,d.16.1.3 77815,77816 1w6uA 302 45.84 c.2.1.2 114288 1qycA 308 45.94 c.2.1.2 96581 1zh8A 340 46.18 c.2.1.3,d.81.1.5 125077,125078 1zk4A 251 47.17 c.2.1.2 125176 1fmcA 255 47.54 c.2.1.2 29856 5nul 138 47.60 1cydA 244 48.28 c.2.1.2 29825 1orrA 347 48.81 c.2.1.2 93460 1xu9A 286 48.87 c.2.1.2 116052 1n7hA 381 49.54 c.2.1.2 80250 2jahA 247 49.60 2bgkA 278 50.29 c.2.1.2 128480 2a4kA 263 51.84 c.2.1.2 126156 1gtmA 419 52.26 c.2.1.7,c.58.1.1 30223,33871 2gasA 307 52.59 1vl8A 267 53.10 c.2.1.2 108733 1yb1A 272 54.46 c.2.1.2 116599 1y1pA 342 54.46 c.2.1.2 122550 1ja9A 274 54.56 c.2.1.2 62817 1hdcA 253 55.37 c.2.1.2 29862 1q7bA 244 56.34 c.2.1.2 96026 2o23A 265 56.39 c.2.1.2 138884 2nwqA 272 56.64 1n8kA 374 56.82 b.35.1.2,c.2.1.1 80298,80299 2cdcA 366 57.01 1nffA 260 57.48 c.2.1.2 80457 1othA 321 57.64 c.78.1.1,c.78.1.1 35260,35261 2yx0A 342 57.84 2q46A 253 58.51 c.2.1.2 139825 1hxhA 253 59.38 c.2.1.2 76725 2obnA 349 59.39 1zmdA 474 60.03 2gqwA 408 61.42 1rkxA 357 61.52 c.2.1.2 97631 2ag5A 246 62.16 c.2.1.2 126719 2r6jA 318 62.58 2cduA 452 63.11 1sbyA 254 63.30 c.2.1.2 118930 1b7gO 340 63.39 c.2.1.3,d.81.1.1 29992,39907 2r0cA 549 63.60 2ekpA 239 63.92 1pbeA 394 64.08 c.3.1.2,d.16.1.2 30338,37869 1y56B 382 64.21 1l1eA 287 64.51 c.66.1.18 73454 2c29D 337 64.62 5nulA 138 65.56 c.23.5.1 31191 2ixaA 444 65.65 2h1rA 299 66.75 1mb4A 370 67.01 c.2.1.3,d.81.1.1 78908,78909 1ys4A 354 67.10 2fdxA 138 68.05 c.23.5.1 31192 2qa1A 500 68.38 1bgvA 449 69.17 c.2.1.7,c.58.1.1 30217,33865 1h5qA 265 69.72 c.2.1.2 60643 2gf3A 389 70.86 c.3.1.2,d.16.1.3 135070,135071 1q7gA 359 71.04 c.2.1.3,d.81.1.2 96038,96039 1xgkA 352 71.05 c.2.1.2 115286 1bdbA 277 72.10 c.2.1.2 29874 1yqzA 438 72.14 1vl6A 388 72.86 c.2.1.7,c.58.1.3 108724,108725 2hsjA 214 73.32 1kewA 361 73.73 c.2.1.2 68544 2pnfA 248 75.23 1fl2A 310 76.33 c.3.1.5,c.3.1.5 59869,59870 1dv2A 452 77.66 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1k7cA 233 78.42 c.23.10.4 68267 1zq9A 285 79.11 c.66.1.24 125505 2yutA 207 80.75 1i24A 404 81.03 c.2.1.2 83663 2ph3A 245 82.95 2pn1A 331 83.09 1bxkA 355 84.99 c.2.1.2 29803 1e6wA 260 85.33 c.2.1.2 59326 2c07A 285 85.66 c.2.1.2 129577 1y5mA 276 86.55 c.2.1.2 122645 1x1eA 239 86.74 1sb8A 352 87.15 c.2.1.2 105410 2cmgA 262 88.43 1yovA 537 89.20 c.111.1.2 123785