# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 8.99e-12 2h78A 302 1.06e-11 1vpdA 299 7.05e-11 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 8.47e-11 2ahrA 259 9.28e-11 a.100.1.10,c.2.1.6 126775,126776 2rcyA 262 9.48e-11 2izzA 322 2.02e-10 2f1kA 279 4.22e-10 a.100.1.12,c.2.1.6 132772,132773 1yqgA 263 4.89e-10 2pgdA 482 5.62e-10 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 9.28e-10 2cvzA 289 9.83e-10 a.100.1.1,c.2.1.6 130890,130891 2g5cA 281 1.52e-09 a.100.1.12,c.2.1.6 134646,134647 2graA 277 1.64e-09 2pv7A 298 3.04e-09 1np3A 338 5.50e-09 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 1.00e-08 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 1.69e-08 3c24A 286 3.78e-08 1i36A 264 1.44e-07 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 2.49e-07 1ks9A 291 3.38e-07 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 4.16e-07 a.100.1.6,c.2.1.6 112775,112776 1yrlA 491 6.50e-07 2ew2A 316 9.17e-07 1qmgA 524 1.16e-06 a.100.1.2,c.2.1.6 18785,30182 1evyA 366 1.32e-06 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 1.38e-06 2o3jA 481 4.68e-06 1dljA 402 7.11e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 7.41e-06 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 8.46e-06 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1z82A 335 1.99e-05 1dliA 402 2.29e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zcjA 463 0.000103 1jayA 212 0.000132 c.2.1.6 66478 1bg6A 359 0.001431 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.002474 1ff9A 450 0.003541 c.2.1.3,d.81.1.2 30039,39954 2qytA 317 0.007093 1x0vA 354 0.007292 1gdhA 320 0.01898 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.02633 c.2.1.4,c.23.12.1 30088,31348 1u8xX 472 0.03701 c.2.1.5,d.162.1.2 107741,107742 1mx3A 347 0.04300 c.2.1.4,c.23.12.1 79638,79639 1t2dA 322 0.04549 c.2.1.5,d.162.1.1 99084,99085 1tltA 319 0.05004 c.2.1.3,d.81.1.5 107135,107136 2b0jA 358 0.05048 a.100.1.11,c.2.1.6 127639,127640 1ldg 316 0.05936 1gpjA 404 0.06214 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1li4A 432 0.06782 c.2.1.4,c.23.12.3 84616,84617 2fssA 365 0.06860 1j4aA 333 0.07974 c.2.1.4,c.23.12.1 71502,71503 1wwkA 307 0.08062 1uxjA 309 0.08761 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 0.08860 c.2.1.5,d.162.1.1 99807,99808 1up6A 416 0.09770 c.2.1.5,d.162.1.2 107976,107977 1pzgA 331 0.1014 c.2.1.5,d.162.1.1 95425,95426 1d4fA 431 0.1031 c.2.1.4,c.23.12.3 30110,31370 1lldA 319 0.1061 c.2.1.5,d.162.1.1 30177,42144 1xwfA 431 0.1212 c.2.1.4,c.23.12.3 122392,122393 2j6iA 364 0.1266 1omoA 322 0.1295 c.2.1.13 104017 1v8bA 479 0.1393 c.2.1.4,c.23.12.3 113564,113565 1psdA 409 0.1402 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2hk9A 275 0.1434 1vllA 334 0.1491 c.2.1.13 108834 1lssA 140 0.1654 c.2.1.9 74246 1xdwA 331 0.1663 2g76A 335 0.1773 1dxy 333 0.2088 1sc6A 404 0.2396 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1x7dA 350 0.2611 c.2.1.13 114927 1xeaA 323 0.3217 c.2.1.3,d.81.1.5 109572,109573 2d0iA 333 0.3473 1up7A 417 0.3475 c.2.1.5,d.162.1.2 113374,113375 2dbqA 334 0.3679 2o4cA 380 0.4156 2pi1A 334 0.5113 2ewdA 317 0.5144 2d5cA 263 0.5533 1obbA 480 0.5755 c.2.1.5,d.162.1.2 86760,86761 1nytA 271 0.5778 c.2.1.7,c.58.1.5 86417,86418 1s6yA 450 0.7291 c.2.1.5,d.162.1.2 105314,105315 1hyhA 309 0.7388 c.2.1.5,d.162.1.1 30150,42117 1ygyA 529 0.7995 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1guzA 310 0.8166 c.2.1.5,d.162.1.1 65586,65587 6ldhA 329 0.8958 c.2.1.5,d.162.1.1 30161,42128 1qv9A 283 0.9210 c.127.1.1 96356 2nvwA 479 0.9655 c.2.1.3,d.81.1.5 138665,138666 2i6tA 303 0.995 2axqA 467 1.018 1f06A 320 1.125 c.2.1.3,d.81.1.3 59556,59557 2vhxA 377 1.146 2eggA 297 1.188 1vjtA 483 1.213 c.2.1.5,d.162.1.2 100833,100834 1dxyA 333 1.284 c.2.1.4,c.23.12.1 30094,31354 1npyA 271 1.380 c.2.1.7,c.58.1.5 85995,85996 2v7pA 310 1.710 2nloA 302 1.787 2hmvA 144 1.919 c.2.1.9 136615 2d59A 144 1.937 c.2.1.8 131266 1a5zA 319 1.952 c.2.1.5,d.162.1.1 30181,42148 1pjcA 361 1.962 c.2.1.4,c.23.12.2 30101,31361 2gcgA 330 2.001 1p77A 272 2.019 c.2.1.7,c.58.1.5 94214,94215 1gcuA 295 2.023 c.2.1.3,d.81.1.4 30063,39978 1lehA 364 2.106 c.2.1.7,c.58.1.1 30268,33916 1nvtA 287 2.238 c.2.1.7,c.58.1.5 86270,86271 3c85A 183 2.356 1qp8A 303 2.374 c.2.1.4,c.23.12.1 30092,31352 2aefA 234 2.553 2vojA 371 2.634 1c1dA 355 2.745 c.2.1.7,c.58.1.1 30270,33918 2gptA 523 3.415 1ez4A 318 3.804 c.2.1.5,d.162.1.1 64917,64918 2ho3A 325 3.811 2glxA 332 3.853 2o7sA 523 4.302 2dc1A 236 4.326 1hdoA 206 4.346 c.2.1.2 60965 1y81A 138 4.416 c.2.1.8 122731 1lsuA 147 4.468 c.2.1.9 74250 2cukA 311 4.810 2g1uA 155 5.035 1iukA 140 5.605 c.2.1.8 83712 1a4iA 301 5.731 c.2.1.7,c.58.1.2 30278,33926 2cmdA 312 5.993 c.2.1.5,d.162.1.1 30135,42102 2csuA 457 6.364 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1luaA 287 6.407 c.2.1.7,c.58.1.4 78216,78217 3ceaA 346 7.044 1ofgA 381 7.106 c.2.1.3,d.81.1.5 30064,39979 1j5pA 253 7.287 d.81.1.3,c.2.1.3 71577,83092 1vknA 351 8.205 c.2.1.3,d.81.1.1 108676,108677 3c1aA 315 9.028 1nvmB 312 9.039 c.2.1.3,d.81.1.1 86251,86252 1n7hA 381 9.738 c.2.1.2 80250 1scuA 288 10.23 c.2.1.8,c.23.4.1 30307,31135 2hjsA 340 10.87 c.2.1.3,d.81.1.1 136547,136548 1h6dA 433 11.10 c.2.1.3,d.81.1.5 65656,65657 1l7dA 384 11.41 c.2.1.4,c.23.12.2 77774,77775 2p2sA 336 11.81 2czcA 334 12.07 d.81.1.1 131044 1lc0A 294 12.26 c.2.1.3,d.81.1.4 73823,73824 1k2wA 256 13.47 c.2.1.2 90927 2exxA 306 13.72 2z1nA 260 13.76 2ph5A 480 14.89 1vi2A 300 15.77 c.2.1.7,c.58.1.5 100726,100727 1qydA 313 15.79 c.2.1.2 96583 2nqtA 352 15.88 1xseA 295 16.14 c.2.1.2 115925 2gz1A 366 16.28 c.2.1.3,d.81.1.1 135887,135888 1rydA 387 16.71 c.2.1.3,d.81.1.5 118801,118802 1k6xA 352 16.80 c.2.1.2 68238 1db3A 372 16.99 c.2.1.2 29813 1orrA 347 17.13 c.2.1.2 93460 1gegA 256 17.19 c.2.1.2 29888 2a4kA 263 17.43 c.2.1.2 126156 1bxkA 355 17.50 c.2.1.2 29803 1e3jA 352 17.62 b.35.1.2,c.2.1.1 24765,29781 2q4eA 362 18.13 1drw 273 18.45 1t2aA 375 18.49 c.2.1.2 99078 1b0aA 288 19.12 c.2.1.7,c.58.1.2 30286,33934 1xq6A 253 19.55 c.2.1.2 115829 1xhlA 297 19.75 c.2.1.2 109591 2v3aA 384 20.46 1x7gA 261 20.51 c.2.1.2 114929 2yx0A 342 20.96 1xkqA 280 21.24 c.2.1.2 115417 1id1A 153 22.72 c.2.1.9 62286 2o23A 265 23.18 c.2.1.2 138884 1xcbA 211 23.67 a.4.5.38,c.2.1.12 109552,109553 1jw9B 249 23.98 c.111.1.1 67377 1rkxA 357 24.64 c.2.1.2 97631 2r00A 336 24.87 1pl8A 356 25.55 b.35.1.2,c.2.1.1 94878,94879 1kewA 361 26.57 c.2.1.2 68544 2g17A 337 28.34 c.2.1.3,d.81.1.1 134512,134513 2jahA 247 28.82 2dt5A 211 28.84 a.4.5.38,c.2.1.12 131708,131709 1w6uA 302 29.45 c.2.1.2 114288 1hxhA 253 29.49 c.2.1.2 76725 1uufA 369 29.61 b.35.1.2,c.2.1.1 100006,100007 1xgkA 352 29.91 c.2.1.2 115286 1ydeA 270 30.49 c.2.1.2 122980 1q7bA 244 30.73 c.2.1.2 96026 1drwA 273 31.04 c.2.1.3,d.81.1.3 30057,39972 2ozpA 345 31.12 1b16A 254 31.12 c.2.1.2 29875 1ja9A 274 31.14 c.2.1.2 62817 1fmcA 255 31.18 c.2.1.2 29856 2pd6A 264 31.60 2o4uX 334 32.15 2ixaA 444 32.31 1l1eA 287 32.33 c.66.1.18 73454 1zh8A 340 32.46 c.2.1.3,d.81.1.5 125077,125078 2gasA 307 33.11 1vl8A 267 33.70 c.2.1.2 108733 3bioA 304 34.60 1xg5A 279 35.16 c.2.1.2 115277 1spxA 278 35.16 c.2.1.2 98958 2pnfA 248 35.50 1nffA 260 36.59 c.2.1.2 80457 2hsjA 214 36.95 2eklA 313 37.45 1e6wA 260 37.61 c.2.1.2 59326 1zk4A 251 37.89 c.2.1.2 125176 1rpnA 335 39.06 c.2.1.2 97708 5nul 138 40.61 1zd8A 227 40.87 2r6jA 318 41.63 2q46A 253 41.83 c.2.1.2 139825 1zmtA 254 42.81 c.2.1.2 125363 2cdcA 366 43.20 1cf2O 337 43.25 c.2.1.3,d.81.1.1 29994,39909 1sb8A 352 43.26 c.2.1.2 105410 2gdzA 267 44.99 c.2.1.2 135043 1hdcA 253 45.00 c.2.1.2 29862 1qycA 308 45.21 c.2.1.2 96581 2p4hX 322 45.26 2bryA 497 46.67 1zud1 251 46.88 2a9fA 398 47.19 1yxmA 303 47.22 c.2.1.2 124192 2c5aA 379 48.26 c.2.1.2 129894 1oc2A 348 48.95 c.2.1.2 92765 1k7cA 233 49.81 c.23.10.4 68267 1e7wA 291 50.20 c.2.1.2 59373 2cfcA 250 50.42 2ph3A 245 51.19 1hyuA 521 51.26 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1dv2A 452 52.63 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1sbyA 254 52.91 c.2.1.2 118930 2b69A 343 53.46 c.2.1.2 127974 1pwxA 254 53.63 c.2.1.2 95262 1in4A 334 53.90 a.4.5.11,c.37.1.20 62597,62598 2ag5A 246 54.38 c.2.1.2 126719 1x13A 401 56.36 2jhfA 374 57.21 b.35.1.2,c.2.1.1 138314,138315 2nwqA 272 57.64 2p91A 285 58.28 1yqzA 438 58.30 1m1nB 522 60.19 c.92.2.3 78418 1zmdA 474 61.20 1l9cA 389 61.25 c.3.1.2,d.16.1.3 77815,77816 1xu9A 286 62.66 c.2.1.2 116052 1hwxA 501 62.89 c.2.1.7,c.58.1.1 30250,33898 2qa1A 500 63.01 2blnA 305 63.45 b.46.1.1,c.65.1.1 128734,128735 1bdbA 277 63.90 c.2.1.2 29874 2fdxA 138 64.80 c.23.5.1 31192 1nhp 447 65.36 1o6zA 303 65.78 c.2.1.5,d.162.1.1 81107,81108 2nqrA 411 66.05 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2d8aA 348 67.13 2c07A 285 67.20 c.2.1.2 129577 1vj0A 380 68.72 b.35.1.2,c.2.1.1 100786,100787 1pjqA 457 69.18 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2yutA 207 71.40 2r0cA 549 71.51 1fl2A 310 73.52 c.3.1.5,c.3.1.5 59869,59870 1y1pA 342 73.84 c.2.1.2 122550 2gqwA 408 74.81 2bzgA 232 75.62 c.66.1.36 129559 1yzfA 195 77.70 c.23.10.5 124275 2gf3A 389 78.08 c.3.1.2,d.16.1.3 135070,135071 1cydA 244 78.88 c.2.1.2 29825 2z1mA 345 78.92 1i2cA 404 81.73 c.2.1.2 83666 1x1eA 239 81.77 1eq2A 310 83.24 c.2.1.2 29814 1kpgA 287 83.35 c.66.1.18 68735 2pn1A 331 84.08 2bgkA 278 85.01 c.2.1.2 128480 2cmgA 262 86.01 1eyzA 392 86.20 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1oi7A 288 87.01 c.2.1.8,c.23.4.1 87049,87050 1othA 321 87.35 c.78.1.1,c.78.1.1 35260,35261 1bgvA 449 87.51 c.2.1.7,c.58.1.1 30217,33865 2b5wA 357 87.55 1b7gO 340 89.09 c.2.1.3,d.81.1.1 29992,39907 1vqwA 457 89.78 c.3.1.5,c.3.1.5 114028,114029