# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 2.85e-12 2h78A 302 4.21e-12 1vpdA 299 2.77e-11 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 3.47e-11 2rcyA 262 4.23e-11 2ahrA 259 4.62e-11 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 1.21e-10 2f1kA 279 1.96e-10 a.100.1.12,c.2.1.6 132772,132773 1yqgA 263 2.03e-10 2pgdA 482 2.60e-10 a.100.1.1,c.2.1.6 18778,30190 2cvzA 289 3.59e-10 a.100.1.1,c.2.1.6 130890,130891 2p4qA 497 5.41e-10 2g5cA 281 7.96e-10 a.100.1.12,c.2.1.6 134646,134647 2graA 277 9.42e-10 2pv7A 298 1.48e-09 1np3A 338 3.56e-09 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 5.06e-09 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 9.19e-09 3c24A 286 2.50e-08 1i36A 264 6.21e-08 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 1.50e-07 1ks9A 291 2.07e-07 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 2.53e-07 a.100.1.6,c.2.1.6 112775,112776 1yrlA 491 5.14e-07 2ew2A 316 6.35e-07 1qmgA 524 6.57e-07 a.100.1.2,c.2.1.6 18785,30182 1evyA 366 8.25e-07 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 8.92e-07 2o3jA 481 1.93e-06 1mv8A 436 5.11e-06 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1f0yA 302 5.60e-06 a.100.1.3,c.2.1.6 18793,30197 1dljA 402 5.75e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1z82A 335 1.16e-05 1dliA 402 1.64e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zcjA 463 6.72e-05 1jayA 212 0.000105 c.2.1.6 66478 1bg6A 359 0.000850 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.002466 1ff9A 450 0.002501 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.005602 2qytA 317 0.006212 1gdhA 320 0.01304 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.01502 c.2.1.4,c.23.12.1 30088,31348 1u8xX 472 0.02942 c.2.1.5,d.162.1.2 107741,107742 1mx3A 347 0.03270 c.2.1.4,c.23.12.1 79638,79639 1t2dA 322 0.03696 c.2.1.5,d.162.1.1 99084,99085 2b0jA 358 0.04671 a.100.1.11,c.2.1.6 127639,127640 2fssA 365 0.05091 1gpjA 404 0.05121 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1tltA 319 0.05215 c.2.1.3,d.81.1.5 107135,107136 1ldg 316 0.05286 1li4A 432 0.05676 c.2.1.4,c.23.12.3 84616,84617 1j4aA 333 0.06232 c.2.1.4,c.23.12.1 71502,71503 1wwkA 307 0.06305 1lldA 319 0.07232 c.2.1.5,d.162.1.1 30177,42144 1uxjA 309 0.07942 c.2.1.5,d.162.1.1 108112,108113 1up6A 416 0.08054 c.2.1.5,d.162.1.2 107976,107977 1pzgA 331 0.08769 c.2.1.5,d.162.1.1 95425,95426 1d4fA 431 0.08793 c.2.1.4,c.23.12.3 30110,31370 1ur5A 309 0.08832 c.2.1.5,d.162.1.1 99807,99808 1xwfA 431 0.09602 c.2.1.4,c.23.12.3 122392,122393 2j6iA 364 0.1021 1omoA 322 0.1047 c.2.1.13 104017 1xdwA 331 0.1115 2hk9A 275 0.1182 1psdA 409 0.1206 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2g76A 335 0.1235 1lssA 140 0.1239 c.2.1.9 74246 1v8bA 479 0.1398 c.2.1.4,c.23.12.3 113564,113565 1vllA 334 0.1439 c.2.1.13 108834 1dxy 333 0.1714 1sc6A 404 0.2054 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1x7dA 350 0.2100 c.2.1.13 114927 2dbqA 334 0.2400 1xeaA 323 0.2718 c.2.1.3,d.81.1.5 109572,109573 1up7A 417 0.2866 c.2.1.5,d.162.1.2 113374,113375 2d0iA 333 0.3027 2o4cA 380 0.3596 2ewdA 317 0.4449 2pi1A 334 0.4554 2d5cA 263 0.4956 1nytA 271 0.5059 c.2.1.7,c.58.1.5 86417,86418 1hyhA 309 0.5439 c.2.1.5,d.162.1.1 30150,42117 1qv9A 283 0.5782 c.127.1.1 96356 1ygyA 529 0.5969 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1s6yA 450 0.6232 c.2.1.5,d.162.1.2 105314,105315 1obbA 480 0.6615 c.2.1.5,d.162.1.2 86760,86761 6ldhA 329 0.7595 c.2.1.5,d.162.1.1 30161,42128 2axqA 467 0.8077 1guzA 310 0.8110 c.2.1.5,d.162.1.1 65586,65587 2nvwA 479 0.8347 c.2.1.3,d.81.1.5 138665,138666 2eggA 297 0.9255 1f06A 320 0.9909 c.2.1.3,d.81.1.3 59556,59557 2i6tA 303 1.036 1dxyA 333 1.091 c.2.1.4,c.23.12.1 30094,31354 1npyA 271 1.129 c.2.1.7,c.58.1.5 85995,85996 2vhxA 377 1.154 1vjtA 483 1.160 c.2.1.5,d.162.1.2 100833,100834 2nloA 302 1.361 2gcgA 330 1.418 1a5zA 319 1.645 c.2.1.5,d.162.1.1 30181,42148 1nvtA 287 1.695 c.2.1.7,c.58.1.5 86270,86271 2v7pA 310 1.701 1lehA 364 1.823 c.2.1.7,c.58.1.1 30268,33916 1p77A 272 1.873 c.2.1.7,c.58.1.5 94214,94215 2hmvA 144 1.896 c.2.1.9 136615 1qp8A 303 1.926 c.2.1.4,c.23.12.1 30092,31352 1pjcA 361 1.982 c.2.1.4,c.23.12.2 30101,31361 1gcuA 295 2.138 c.2.1.3,d.81.1.4 30063,39978 2vojA 371 2.163 2gptA 523 2.551 3c85A 183 2.633 1c1dA 355 2.742 c.2.1.7,c.58.1.1 30270,33918 2d59A 144 2.766 c.2.1.8 131266 2aefA 234 2.997 2o7sA 523 3.102 1hdoA 206 3.262 c.2.1.2 60965 2ho3A 325 3.452 1ez4A 318 3.517 c.2.1.5,d.162.1.1 64917,64918 1lsuA 147 3.770 c.2.1.9 74250 2cukA 311 3.875 2dc1A 236 4.613 2g1uA 155 4.934 1j5pA 253 4.980 d.81.1.3,c.2.1.3 71577,83092 1a4iA 301 5.929 c.2.1.7,c.58.1.2 30278,33926 2glxA 332 6.418 2csuA 457 6.518 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2cmdA 312 6.911 c.2.1.5,d.162.1.1 30135,42102 1luaA 287 7.141 c.2.1.7,c.58.1.4 78216,78217 3c1aA 315 7.793 1ofgA 381 8.579 c.2.1.3,d.81.1.5 30064,39979 2ph5A 480 8.641 1n7hA 381 8.866 c.2.1.2 80250 1scuA 288 9.063 c.2.1.8,c.23.4.1 30307,31135 1vknA 351 9.547 c.2.1.3,d.81.1.1 108676,108677 1iukA 140 9.876 c.2.1.8 83712 2p2sA 336 9.904 1y81A 138 10.07 c.2.1.8 122731 3ceaA 346 10.25 1nvmB 312 10.59 c.2.1.3,d.81.1.1 86251,86252 1lc0A 294 11.21 c.2.1.3,d.81.1.4 73823,73824 2czcA 334 11.75 d.81.1.1 131044 2exxA 306 13.47 2hjsA 340 13.58 c.2.1.3,d.81.1.1 136547,136548 1qydA 313 13.82 c.2.1.2 96583 1db3A 372 13.89 c.2.1.2 29813 1l7dA 384 14.53 c.2.1.4,c.23.12.2 77774,77775 2z1nA 260 14.59 1k6xA 352 14.59 c.2.1.2 68238 2a4kA 263 14.83 c.2.1.2 126156 1vi2A 300 15.10 c.2.1.7,c.58.1.5 100726,100727 1h6dA 433 15.18 c.2.1.3,d.81.1.5 65656,65657 2yx0A 342 15.25 2gz1A 366 15.85 c.2.1.3,d.81.1.1 135887,135888 1bxkA 355 15.94 c.2.1.2 29803 1k2wA 256 16.23 c.2.1.2 90927 2q4eA 362 16.25 1xhlA 297 16.45 c.2.1.2 109591 1orrA 347 16.60 c.2.1.2 93460 1b0aA 288 17.14 c.2.1.7,c.58.1.2 30286,33934 1gegA 256 17.38 c.2.1.2 29888 1xq6A 253 17.54 c.2.1.2 115829 1xseA 295 17.77 c.2.1.2 115925 2nqtA 352 18.01 1e3jA 352 18.54 b.35.1.2,c.2.1.1 24765,29781 1t2aA 375 18.55 c.2.1.2 99078 1xkqA 280 18.74 c.2.1.2 115417 1jw9B 249 18.76 c.111.1.1 67377 1drw 273 19.17 1hxhA 253 23.23 c.2.1.2 76725 1rydA 387 23.96 c.2.1.3,d.81.1.5 118801,118802 2v3aA 384 23.99 2q46A 253 24.16 c.2.1.2 139825 2o23A 265 24.24 c.2.1.2 138884 1q7bA 244 25.98 c.2.1.2 96026 1x7gA 261 26.56 c.2.1.2 114929 1id1A 153 26.66 c.2.1.9 62286 1nffA 260 26.74 c.2.1.2 80457 2g17A 337 27.14 c.2.1.3,d.81.1.1 134512,134513 1l1eA 287 27.69 c.66.1.18 73454 1fmcA 255 27.94 c.2.1.2 29856 1ja9A 274 28.22 c.2.1.2 62817 2hsjA 214 28.54 1w6uA 302 28.86 c.2.1.2 114288 2jahA 247 29.45 1kewA 361 30.21 c.2.1.2 68544 1xgkA 352 30.47 c.2.1.2 115286 3bioA 304 31.13 1rkxA 357 31.95 c.2.1.2 97631 1b16A 254 31.96 c.2.1.2 29875 2ozpA 345 33.23 2eklA 313 33.63 1vl8A 267 33.72 c.2.1.2 108733 2r00A 336 34.12 1ydeA 270 34.37 c.2.1.2 122980 1zud1 251 35.09 1xcbA 211 35.30 a.4.5.38,c.2.1.12 109552,109553 1spxA 278 35.55 c.2.1.2 98958 1pl8A 356 36.05 b.35.1.2,c.2.1.1 94878,94879 2dt5A 211 36.25 a.4.5.38,c.2.1.12 131708,131709 2gasA 307 36.53 1sb8A 352 36.69 c.2.1.2 105410 1uufA 369 36.71 b.35.1.2,c.2.1.1 100006,100007 1drwA 273 37.36 c.2.1.3,d.81.1.3 30057,39972 1hdcA 253 37.47 c.2.1.2 29862 2pnfA 248 37.91 2p4hX 322 38.17 1zk4A 251 38.59 c.2.1.2 125176 1k7cA 233 38.90 c.23.10.4 68267 1zd8A 227 39.47 2pd6A 264 39.88 1e6wA 260 40.06 c.2.1.2 59326 2ixaA 444 40.62 2c5aA 379 40.99 c.2.1.2 129894 2a9fA 398 41.61 1oc2A 348 44.64 c.2.1.2 92765 1yxmA 303 44.76 c.2.1.2 124192 5nul 138 44.84 1cf2O 337 45.45 c.2.1.3,d.81.1.1 29994,39909 2ag5A 246 45.75 c.2.1.2 126719 1hwxA 501 46.18 c.2.1.7,c.58.1.1 30250,33898 1xg5A 279 46.22 c.2.1.2 115277 1e7wA 291 46.28 c.2.1.2 59373 1rpnA 335 47.44 c.2.1.2 97708 2cfcA 250 47.65 1zmtA 254 47.82 c.2.1.2 125363 1qycA 308 48.11 c.2.1.2 96581 2ph3A 245 48.62 1hyuA 521 50.44 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2b69A 343 50.55 c.2.1.2 127974 2r6jA 318 51.10 2gdzA 267 51.24 c.2.1.2 135043 1in4A 334 51.42 a.4.5.11,c.37.1.20 62597,62598 1zh8A 340 51.97 c.2.1.3,d.81.1.5 125077,125078 2o4uX 334 55.87 1yqzA 438 56.77 1l9cA 389 57.21 c.3.1.2,d.16.1.3 77815,77816 1sbyA 254 57.77 c.2.1.2 118930 1oi7A 288 58.63 c.2.1.8,c.23.4.1 87049,87050 1x13A 401 60.22 2nqrA 411 60.44 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 1dv2A 452 61.64 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1vj0A 380 61.75 b.35.1.2,c.2.1.1 100786,100787 2cdcA 366 61.86 2bryA 497 62.22 2bzgA 232 64.08 c.66.1.36 129559 1pwxA 254 64.46 c.2.1.2 95262 2c07A 285 65.70 c.2.1.2 129577 2blnA 305 65.93 b.46.1.1,c.65.1.1 128734,128735 2jhfA 374 65.96 b.35.1.2,c.2.1.1 138314,138315 1m1nB 522 66.48 c.92.2.3 78418 1cydA 244 68.44 c.2.1.2 29825 1yovA 537 68.54 c.111.1.2 123785 2p91A 285 69.24 1nhp 447 69.59 1bgvA 449 70.00 c.2.1.7,c.58.1.1 30217,33865 1bdbA 277 70.58 c.2.1.2 29874 2fdxA 138 71.25 c.23.5.1 31192 1xhcA 367 72.60 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1zmdA 474 72.74 1kevA 351 72.76 b.35.1.2,c.2.1.1 24749,29765 2nwqA 272 72.79 1eyzA 392 72.90 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2gf3A 389 72.95 c.3.1.2,d.16.1.3 135070,135071 1i2cA 404 73.17 c.2.1.2 83666 1fl2A 310 74.30 c.3.1.5,c.3.1.5 59869,59870 1yzfA 195 74.55 c.23.10.5 124275 1o6zA 303 74.59 c.2.1.5,d.162.1.1 81107,81108 2qa1A 500 75.96 1othA 321 76.04 c.78.1.1,c.78.1.1 35260,35261 1y1pA 342 76.32 c.2.1.2 122550 1x1eA 239 77.24 1jqbA 351 77.33 b.35.1.2,c.2.1.1 77151,77152 1kjqA 391 77.84 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1pjqA 457 78.19 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1vqwA 457 79.80 c.3.1.5,c.3.1.5 114028,114029 2pn1A 331 80.99 2r0cA 549 81.00 1duvG 333 81.83 c.78.1.1,c.78.1.1 35228,35229 2bgkA 278 82.01 c.2.1.2 128480 1zq9A 285 82.51 c.66.1.24 125505 1aj2A 282 84.64 c.1.21.1 29665 1x1tA 260 84.82 c.2.1.2 121597 2yutA 207 85.33 1gnd 447 87.56 3c4aA 381 87.94 2h6eA 344 88.09 2cmgA 262 89.45 1b7gO 340 89.81 c.2.1.3,d.81.1.1 29992,39907