# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h78A 302 4.49e-05 1yb4A 295 4.91e-05 2i76A 276 9.41e-05 1vpdA 299 0.000101 a.100.1.1,c.2.1.6 113951,113952 2rcyA 262 0.000111 2ahrA 259 0.000154 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000161 2pgdA 482 0.000269 a.100.1.1,c.2.1.6 18778,30190 1yqgA 263 0.000303 2p4qA 497 0.000310 2cvzA 289 0.000336 a.100.1.1,c.2.1.6 130890,130891 2graA 277 0.000387 2g5cA 281 0.000387 a.100.1.12,c.2.1.6 134646,134647 2f1kA 279 0.000421 a.100.1.12,c.2.1.6 132772,132773 2pv7A 298 0.000534 1np3A 338 0.000851 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 0.001239 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 0.001956 3c24A 286 0.002052 1i36A 264 0.003094 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 0.004520 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.004752 1bg6 359 0.004793 1qmgA 524 0.005224 a.100.1.2,c.2.1.6 18785,30182 1txgA 335 0.007039 a.100.1.6,c.2.1.6 112775,112776 2ew2A 316 0.008068 1evyA 366 0.01077 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 0.01290 2o3jA 481 0.01513 1f0yA 302 0.01931 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 0.02281 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dljA 402 0.03522 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.03697 1dliA 402 0.04352 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 0.04647 1jayA 212 0.1058 c.2.1.6 66478 1bg6A 359 0.2989 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.3897 2dpoA 319 0.4021 2nacA 393 0.8047 c.2.1.4,c.23.12.1 30088,31348 2qytA 317 0.9410 1gdhA 320 1.077 c.2.1.4,c.23.12.1 30095,31355 1ff9A 450 1.107 c.2.1.3,d.81.1.2 30039,39954 1u8xX 472 1.474 c.2.1.5,d.162.1.2 107741,107742 2b0jA 358 1.572 a.100.1.11,c.2.1.6 127639,127640 1up6A 416 2.007 c.2.1.5,d.162.1.2 107976,107977 1t2dA 322 2.061 c.2.1.5,d.162.1.1 99084,99085 1xdwA 331 2.125 1j4aA 333 2.244 c.2.1.4,c.23.12.1 71502,71503 1ldg 316 2.259 2fssA 365 2.820 2g76A 335 2.935 1sc6A 404 2.958 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1vllA 334 2.965 c.2.1.13 108834 1mx3A 347 2.996 c.2.1.4,c.23.12.1 79638,79639 1wwkA 307 3.146 1lssA 140 3.218 c.2.1.9 74246 1omoA 322 3.261 c.2.1.13 104017 1psdA 409 3.322 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1ur5A 309 3.718 c.2.1.5,d.162.1.1 99807,99808 1uxjA 309 3.891 c.2.1.5,d.162.1.1 108112,108113 1pzgA 331 4.122 c.2.1.5,d.162.1.1 95425,95426 2dbqA 334 4.366 1lldA 319 4.582 c.2.1.5,d.162.1.1 30177,42144 2hk9A 275 4.661 1xeaA 323 4.926 c.2.1.3,d.81.1.5 109572,109573 1dxy 333 4.948 1tltA 319 4.976 c.2.1.3,d.81.1.5 107135,107136 1li4A 432 5.361 c.2.1.4,c.23.12.3 84616,84617 6ldhA 329 5.608 c.2.1.5,d.162.1.1 30161,42128 1xwfA 431 5.735 c.2.1.4,c.23.12.3 122392,122393 1gpjA 404 5.763 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2d0iA 333 6.310 2nvwA 479 6.633 c.2.1.3,d.81.1.5 138665,138666 1qv9A 283 7.005 c.127.1.1 96356 2d5cA 263 7.485 2o4cA 380 7.515 1guzA 310 7.679 c.2.1.5,d.162.1.1 65586,65587 1ygyA 529 7.857 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2j6iA 364 7.883 2hmvA 144 8.062 c.2.1.9 136615 1up7A 417 8.079 c.2.1.5,d.162.1.2 113374,113375 2ewdA 317 8.806 2pi1A 334 8.848 1lsuA 147 8.926 c.2.1.9 74250 1qp8A 303 9.97 c.2.1.4,c.23.12.1 30092,31352 1nytA 271 10.01 c.2.1.7,c.58.1.5 86417,86418 2vhxA 377 10.07 1x7dA 350 10.45 c.2.1.13 114927 1hyhA 309 10.45 c.2.1.5,d.162.1.1 30150,42117 1vjtA 483 12.30 c.2.1.5,d.162.1.2 100833,100834 3c85A 183 13.39 2eggA 297 13.58 2d59A 144 14.17 c.2.1.8 131266 1f06A 320 14.75 c.2.1.3,d.81.1.3 59556,59557 2i6tA 303 15.28 2vojA 371 15.85 1pjcA 361 15.89 c.2.1.4,c.23.12.2 30101,31361 2aefA 234 16.31 2axqA 467 16.65 2g1uA 155 17.57 1c1dA 355 17.77 c.2.1.7,c.58.1.1 30270,33918 1a5zA 319 17.97 c.2.1.5,d.162.1.1 30181,42148 1gcuA 295 19.70 c.2.1.3,d.81.1.4 30063,39978 1id1A 153 19.85 c.2.1.9 62286 1nvtA 287 20.43 c.2.1.7,c.58.1.5 86270,86271 2v7pA 310 20.50 2nloA 302 20.51 1luaA 287 21.43 c.2.1.7,c.58.1.4 78216,78217 2cukA 311 21.62 1y81A 138 22.90 c.2.1.8 122731 2csuA 457 23.03 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2dc1A 236 23.46 1ez4A 318 23.88 c.2.1.5,d.162.1.1 64917,64918 1dxyA 333 24.76 c.2.1.4,c.23.12.1 30094,31354 1npyA 271 25.42 c.2.1.7,c.58.1.5 85995,85996 1obbA 480 26.64 c.2.1.5,d.162.1.2 86760,86761 2o7sA 523 29.35 1j5pA 253 29.38 d.81.1.3,c.2.1.3 71577,83092 1s6yA 450 30.02 c.2.1.5,d.162.1.2 105314,105315 1iukA 140 30.62 c.2.1.8 83712 2gcgA 330 31.50 2nqtA 352 32.38 1d4fA 431 32.59 c.2.1.4,c.23.12.3 30110,31370 1vi2A 300 32.70 c.2.1.7,c.58.1.5 100726,100727 3ceaA 346 34.60 1p77A 272 38.79 c.2.1.7,c.58.1.5 94214,94215 1hdoA 206 40.56 c.2.1.2 60965 2ph5A 480 41.27 2gptA 523 41.49 1scuA 288 42.01 c.2.1.8,c.23.4.1 30307,31135 2hjsA 340 42.81 c.2.1.3,d.81.1.1 136547,136548 2p2sA 336 43.74 2g17A 337 45.00 c.2.1.3,d.81.1.1 134512,134513 1nvmB 312 45.75 c.2.1.3,d.81.1.1 86251,86252 2cmdA 312 47.37 c.2.1.5,d.162.1.1 30135,42102 1yovA 537 47.45 c.111.1.2 123785 1gnd 447 49.78 1lc0A 294 50.61 c.2.1.3,d.81.1.4 73823,73824 1k2wA 256 50.73 c.2.1.2 90927 3c1aA 315 53.24 3bioA 304 53.30 2eklA 313 54.89 2o4uX 334 56.01 1l7dA 384 58.94 c.2.1.4,c.23.12.2 77774,77775 1k6xA 352 60.71 c.2.1.2 68238 2ho3A 325 62.11 1jw9B 249 63.63 c.111.1.1 67377 1xhlA 297 64.50 c.2.1.2 109591 1bxkA 355 64.73 c.2.1.2 29803 1orrA 347 65.83 c.2.1.2 93460 1t2aA 375 66.61 c.2.1.2 99078 3grs 478 66.62 1zmdA 474 67.18 1rkxA 357 67.42 c.2.1.2 97631 1zh8A 340 69.08 c.2.1.3,d.81.1.5 125077,125078 1h6dA 433 69.49 c.2.1.3,d.81.1.5 65656,65657 1oi7A 288 71.10 c.2.1.8,c.23.4.1 87049,87050 1xseA 295 73.17 c.2.1.2 115925 1drwA 273 74.13 c.2.1.3,d.81.1.3 30057,39972 1hdcA 253 74.74 c.2.1.2 29862 1drw 273 76.23 2a9fA 398 77.07 1a4iA 301 78.60 c.2.1.7,c.58.1.2 30278,33926 2q4eA 362 80.98 2jhfA 374 81.79 b.35.1.2,c.2.1.1 138314,138315 1yqzA 438 83.17 1vknA 351 83.18 c.2.1.3,d.81.1.1 108676,108677 2q46A 253 83.75 c.2.1.2 139825 2r00A 336 84.74 2dr1A 386 85.62 1xu9A 286 85.89 c.2.1.2 116052 1mb4A 370 85.97 c.2.1.3,d.81.1.1 78908,78909 1o6zA 303 86.85 c.2.1.5,d.162.1.1 81107,81108 1yxmA 303 87.20 c.2.1.2 124192 2ozpA 345 87.91 1xq6A 253 89.49 c.2.1.2 115829 1yb1A 272 89.93 c.2.1.2 116599