# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h78A 302 1.32e-10 1yb4A 295 1.81e-10 2i76A 276 4.74e-10 2rcyA 262 6.85e-10 1vpdA 299 7.17e-10 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 1.32e-09 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 1.92e-09 2pgdA 482 2.85e-09 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 4.69e-09 1yqgA 263 5.24e-09 2f1kA 279 5.59e-09 a.100.1.12,c.2.1.6 132772,132773 2cvzA 289 8.09e-09 a.100.1.1,c.2.1.6 130890,130891 2pv7A 298 1.57e-08 2graA 277 1.61e-08 2g5cA 281 1.75e-08 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 5.83e-08 a.100.1.2,c.2.1.6 85946,85947 2pgd 482 8.69e-08 1pgjA 478 9.88e-08 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 3.36e-07 1i36A 264 8.61e-07 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 1.01e-06 a.100.1.7,c.2.1.6 68857,68858 1bg6 359 1.06e-06 1txgA 335 1.95e-06 a.100.1.6,c.2.1.6 112775,112776 1yrlA 491 2.13e-06 1qmgA 524 2.19e-06 a.100.1.2,c.2.1.6 18785,30182 2ew2A 316 4.75e-06 1evyA 366 5.21e-06 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 6.64e-06 2o3jA 481 9.56e-06 1mv8A 436 2.14e-05 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1f0yA 302 2.18e-05 a.100.1.3,c.2.1.6 18793,30197 1dljA 402 5.39e-05 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 6.48e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 0.000115 1zcjA 463 0.000200 1jayA 212 0.000303 c.2.1.6 66478 1bg6A 359 0.002859 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.005130 1ff9A 450 0.005614 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.01009 1gdhA 320 0.02389 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.02921 c.2.1.4,c.23.12.1 30088,31348 2qytA 317 0.03268 1u8xX 472 0.05092 c.2.1.5,d.162.1.2 107741,107742 1tltA 319 0.05415 c.2.1.3,d.81.1.5 107135,107136 1t2dA 322 0.06851 c.2.1.5,d.162.1.1 99084,99085 1mx3A 347 0.07541 c.2.1.4,c.23.12.1 79638,79639 1ldg 316 0.09370 1wwkA 307 0.09643 2b0jA 358 0.1004 a.100.1.11,c.2.1.6 127639,127640 2fssA 365 0.1016 1xdwA 331 0.1036 1lldA 319 0.1174 c.2.1.5,d.162.1.1 30177,42144 1j4aA 333 0.1190 c.2.1.4,c.23.12.1 71502,71503 1vllA 334 0.1401 c.2.1.13 108834 2j6iA 364 0.1455 1xwfA 431 0.1556 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 0.1606 c.2.1.4,c.23.12.3 30110,31370 2g76A 335 0.1689 1lssA 140 0.1754 c.2.1.9 74246 1up6A 416 0.1789 c.2.1.5,d.162.1.2 107976,107977 1li4A 432 0.1809 c.2.1.4,c.23.12.3 84616,84617 1omoA 322 0.1895 c.2.1.13 104017 2hk9A 275 0.1973 1psdA 409 0.2016 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1ur5A 309 0.2165 c.2.1.5,d.162.1.1 99807,99808 1pzgA 331 0.2265 c.2.1.5,d.162.1.1 95425,95426 1uxjA 309 0.2289 c.2.1.5,d.162.1.1 108112,108113 1dxy 333 0.2306 1x7dA 350 0.2722 c.2.1.13 114927 1sc6A 404 0.2727 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1v8bA 479 0.2859 c.2.1.4,c.23.12.3 113564,113565 1xeaA 323 0.2992 c.2.1.3,d.81.1.5 109572,109573 1gpjA 404 0.3081 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1up7A 417 0.3572 c.2.1.5,d.162.1.2 113374,113375 2dbqA 334 0.3574 2d0iA 333 0.5018 2o4cA 380 0.6210 1obbA 480 0.6367 c.2.1.5,d.162.1.2 86760,86761 1s6yA 450 0.6715 c.2.1.5,d.162.1.2 105314,105315 2ewdA 317 0.8519 2d5cA 263 0.8794 1hyhA 309 0.8954 c.2.1.5,d.162.1.1 30150,42117 2hmvA 144 0.9603 c.2.1.9 136615 2pi1A 334 0.9737 1guzA 310 0.9823 c.2.1.5,d.162.1.1 65586,65587 1qp8A 303 0.9925 c.2.1.4,c.23.12.1 30092,31352 6ldhA 329 1.067 c.2.1.5,d.162.1.1 30161,42128 1nytA 271 1.089 c.2.1.7,c.58.1.5 86417,86418 1ygyA 529 1.130 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1lsuA 147 1.194 c.2.1.9 74250 1f06A 320 1.226 c.2.1.3,d.81.1.3 59556,59557 2nloA 302 1.232 2nvwA 479 1.369 c.2.1.3,d.81.1.5 138665,138666 2axqA 467 1.391 2glxA 332 1.488 1npyA 271 1.560 c.2.1.7,c.58.1.5 85995,85996 1qv9A 283 1.692 c.127.1.1 96356 2eggA 297 1.721 2gcgA 330 1.756 2ho3A 325 1.815 1gcuA 295 1.945 c.2.1.3,d.81.1.4 30063,39978 1nvtA 287 1.997 c.2.1.7,c.58.1.5 86270,86271 2i6tA 303 1.998 1pjcA 361 2.064 c.2.1.4,c.23.12.2 30101,31361 1vjtA 483 2.144 c.2.1.5,d.162.1.2 100833,100834 2v7pA 310 2.162 2cukA 311 2.397 2d59A 144 2.471 c.2.1.8 131266 1c1dA 355 2.503 c.2.1.7,c.58.1.1 30270,33918 2vhxA 377 2.570 1p77A 272 2.658 c.2.1.7,c.58.1.5 94214,94215 1a5zA 319 3.018 c.2.1.5,d.162.1.1 30181,42148 2dc1A 236 3.179 3ceaA 346 3.304 2aefA 234 3.533 2q4eA 362 3.811 2g1uA 155 3.998 3c85A 183 4.719 1ez4A 318 4.879 c.2.1.5,d.162.1.1 64917,64918 3c1aA 315 4.892 2vojA 371 5.118 1ofgA 381 5.186 c.2.1.3,d.81.1.5 30064,39979 1luaA 287 5.242 c.2.1.7,c.58.1.4 78216,78217 1iukA 140 5.424 c.2.1.8 83712 2gptA 523 5.496 2p2sA 336 5.602 2o7sA 523 5.813 2o4uX 334 6.302 1h6dA 433 6.445 c.2.1.3,d.81.1.5 65656,65657 1hdoA 206 6.557 c.2.1.2 60965 1a4iA 301 6.700 c.2.1.7,c.58.1.2 30278,33926 1vi2A 300 6.755 c.2.1.7,c.58.1.5 100726,100727 1lehA 364 6.987 c.2.1.7,c.58.1.1 30268,33916 1y81A 138 7.345 c.2.1.8 122731 1vknA 351 7.477 c.2.1.3,d.81.1.1 108676,108677 2csuA 457 7.536 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1dxyA 333 7.615 c.2.1.4,c.23.12.1 30094,31354 1j5pA 253 7.657 d.81.1.3,c.2.1.3 71577,83092 1zh8A 340 7.909 c.2.1.3,d.81.1.5 125077,125078 1nvmB 312 9.438 c.2.1.3,d.81.1.1 86251,86252 1rydA 387 10.46 c.2.1.3,d.81.1.5 118801,118802 2ph5A 480 10.49 2czcA 334 10.92 d.81.1.1 131044 1lc0A 294 13.78 c.2.1.3,d.81.1.4 73823,73824 1scuA 288 13.86 c.2.1.8,c.23.4.1 30307,31135 1l7dA 384 13.99 c.2.1.4,c.23.12.2 77774,77775 1id1A 153 14.25 c.2.1.9 62286 2r6jA 318 15.83 1bxkA 355 16.12 c.2.1.2 29803 1n7hA 381 16.69 c.2.1.2 80250 1l1eA 287 17.05 c.66.1.18 73454 1b0aA 288 17.21 c.2.1.7,c.58.1.2 30286,33934 1drwA 273 17.62 c.2.1.3,d.81.1.3 30057,39972 2g17A 337 17.83 c.2.1.3,d.81.1.1 134512,134513 1drw 273 18.37 1xhlA 297 18.37 c.2.1.2 109591 1orrA 347 18.98 c.2.1.2 93460 1k2wA 256 19.04 c.2.1.2 90927 2nqtA 352 19.26 1hxhA 253 19.59 c.2.1.2 76725 2hjsA 340 19.65 c.2.1.3,d.81.1.1 136547,136548 1q7bA 244 19.93 c.2.1.2 96026 1jw9B 249 20.18 c.111.1.1 67377 2cmdA 312 20.89 c.2.1.5,d.162.1.1 30135,42102 1k6xA 352 21.00 c.2.1.2 68238 2v3aA 384 22.02 1nffA 260 22.78 c.2.1.2 80457 2ixaA 444 22.86 2exxA 306 23.88 1pl8A 356 25.17 b.35.1.2,c.2.1.1 94878,94879 1hdcA 253 25.74 c.2.1.2 29862 2z1nA 260 26.01 1xseA 295 26.55 c.2.1.2 115925 2gz1A 366 26.90 c.2.1.3,d.81.1.1 135887,135888 1ydeA 270 27.25 c.2.1.2 122980 1xkqA 280 27.44 c.2.1.2 115417 1e6wA 260 27.84 c.2.1.2 59326 2b5wA 357 28.47 1qydA 313 29.08 c.2.1.2 96583 1zud1 251 31.23 1yxmA 303 31.60 c.2.1.2 124192 2o23A 265 31.73 c.2.1.2 138884 1xu9A 286 31.78 c.2.1.2 116052 1rkxA 357 31.85 c.2.1.2 97631 1zmtA 254 33.31 c.2.1.2 125363 1xq6A 253 33.32 c.2.1.2 115829 2a9fA 398 33.74 1gegA 256 33.94 c.2.1.2 29888 2eklA 313 34.28 1fmcA 255 35.49 c.2.1.2 29856 2gdzA 267 36.26 c.2.1.2 135043 1uufA 369 36.31 b.35.1.2,c.2.1.1 100006,100007 2q49A 359 36.33 c.2.1.3,d.81.1.1 139831,139832 2ozpA 345 37.35 1w6uA 302 37.39 c.2.1.2 114288 2pd6A 264 37.84 2a4kA 263 38.01 c.2.1.2 126156 2h6eA 344 38.14 2cdcA 366 38.26 1yb1A 272 39.44 c.2.1.2 116599 1t2aA 375 40.03 c.2.1.2 99078 2c5aA 379 40.13 c.2.1.2 129894 2gasA 307 40.34 1pwxA 254 40.36 c.2.1.2 95262 2yx0A 342 40.45 1x13A 401 40.67 1sb8A 352 40.92 c.2.1.2 105410 2gqwA 408 41.42 2ag5A 246 41.46 c.2.1.2 126719 1ja9A 274 42.30 c.2.1.2 62817 2bryA 497 43.02 1zmdA 474 43.06 1e3jA 352 44.10 b.35.1.2,c.2.1.1 24765,29781 1db3A 372 46.87 c.2.1.2 29813 1oi7A 288 47.08 c.2.1.8,c.23.4.1 87049,87050 1y5mA 276 47.40 c.2.1.2 122645 1x7gA 261 48.08 c.2.1.2 114929 2q46A 253 48.21 c.2.1.2 139825 3bioA 304 48.51 1bdbA 277 48.57 c.2.1.2 29874 1eyzA 392 48.58 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1vl8A 267 48.58 c.2.1.2 108733 1vj0A 380 48.90 b.35.1.2,c.2.1.1 100786,100787 2r00A 336 49.75 3c8mA 331 50.21 1e7wA 291 51.49 c.2.1.2 59373 2r0cA 549 51.72 1i2cA 404 51.75 c.2.1.2 83666 1spxA 278 52.42 c.2.1.2 98958 1zk4A 251 54.26 c.2.1.2 125176 1cf2O 337 55.01 c.2.1.3,d.81.1.1 29994,39909 1qycA 308 56.74 c.2.1.2 96581 2ph3A 245 58.22 1nhpA 447 58.95 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2jahA 247 59.02 1kewA 361 59.63 c.2.1.2 68544 3grs 478 59.96 1kjqA 391 60.27 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2dt5A 211 60.50 a.4.5.38,c.2.1.12 131708,131709 1cydA 244 60.87 c.2.1.2 29825 1fl2A 310 62.92 c.3.1.5,c.3.1.5 59869,59870 1l9cA 389 65.48 c.3.1.2,d.16.1.3 77815,77816 2qa1A 500 66.52 1aj2A 282 67.01 c.1.21.1 29665 2nwqA 272 68.59 1yqzA 438 70.53 1iy8A 267 71.80 c.2.1.2 83774 2c07A 285 72.54 c.2.1.2 129577 1b16A 254 72.80 c.2.1.2 29875 2p4hX 322 73.64 2d8aA 348 73.70 2cduA 452 73.79 1o6zA 303 73.92 c.2.1.5,d.162.1.1 81107,81108 2pn1A 331 76.09 2blnA 305 77.28 b.46.1.1,c.65.1.1 128734,128735 1hyuA 521 77.84 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2dwcA 433 78.27 2cf5A 357 79.09 2pnfA 248 79.87 1dv2A 452 79.91 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2bzgA 232 80.02 c.66.1.36 129559 1xcbA 211 80.13 a.4.5.38,c.2.1.12 109552,109553 1q1rA 431 80.38 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3bofA 566 80.42 2ae2A 260 80.68 c.2.1.2 29945 1pvvA 315 81.83 c.78.1.1,c.78.1.1 95190,95191 1cs1A 386 83.05 c.67.1.3 34399 1h5qA 265 83.86 c.2.1.2 60643 1in4A 334 83.91 a.4.5.11,c.37.1.20 62597,62598 1l3iA 192 84.48 c.66.1.22 77676 1zemA 262 85.49 c.2.1.2 124984 1nhp 447 85.83 1nhsA 447 86.11 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1othA 321 86.77 c.78.1.1,c.78.1.1 35260,35261 1n8kA 374 87.15 b.35.1.2,c.2.1.1 80298,80299 2cfcA 250 87.57 2z1mA 345 87.71 2dvmA 439 88.42 1xhcA 367 88.78 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2jhfA 374 88.86 b.35.1.2,c.2.1.1 138314,138315 2rbkA 261 89.68 2ew8A 249 89.75 c.2.1.2 132447