# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 1.02e-08 2h78A 302 1.42e-08 2i76A 276 3.77e-08 1vpdA 299 5.04e-08 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 9.32e-08 a.100.1.10,c.2.1.6 126775,126776 2rcyA 262 9.42e-08 2izzA 322 1.31e-07 2f1kA 279 1.75e-07 a.100.1.12,c.2.1.6 132772,132773 2pgdA 482 2.04e-07 a.100.1.1,c.2.1.6 18778,30190 2graA 277 2.79e-07 1yqgA 263 3.04e-07 2p4qA 497 3.18e-07 2cvzA 289 5.55e-07 a.100.1.1,c.2.1.6 130890,130891 2pv7A 298 6.00e-07 2g5cA 281 6.69e-07 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 1.76e-06 a.100.1.2,c.2.1.6 85946,85947 2pgd 482 3.04e-06 1pgjA 478 3.56e-06 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 7.18e-06 1i36A 264 1.70e-05 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 1.80e-05 a.100.1.7,c.2.1.6 68857,68858 1bg6 359 2.28e-05 1yrlA 491 5.53e-05 1txgA 335 5.61e-05 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 6.07e-05 a.100.1.2,c.2.1.6 18785,30182 2ew2A 316 8.99e-05 1evyA 366 9.10e-05 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 0.000166 2o3jA 481 0.000304 1f0yA 302 0.000348 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 0.000480 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dliA 402 0.000642 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 0.000872 1dljA 402 0.001006 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.002295 1jayA 212 0.002903 c.2.1.6 66478 1ff9A 450 0.02575 c.2.1.3,d.81.1.2 30039,39954 2dpoA 319 0.03379 1bg6A 359 0.03593 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.04661 2nacA 393 0.1542 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 0.2140 c.2.1.4,c.23.12.1 30095,31355 2b0jA 358 0.2260 a.100.1.11,c.2.1.6 127639,127640 2qytA 317 0.2860 1tltA 319 0.3146 c.2.1.3,d.81.1.5 107135,107136 2fssA 365 0.4185 1u8xX 472 0.4277 c.2.1.5,d.162.1.2 107741,107742 1mx3A 347 0.4557 c.2.1.4,c.23.12.1 79638,79639 1t2dA 322 0.4664 c.2.1.5,d.162.1.1 99084,99085 1j4aA 333 0.6371 c.2.1.4,c.23.12.1 71502,71503 1up6A 416 0.6681 c.2.1.5,d.162.1.2 107976,107977 2j6iA 364 0.6753 1ldg 316 0.6844 1wwkA 307 0.7003 1ur5A 309 0.7010 c.2.1.5,d.162.1.1 99807,99808 1uxjA 309 0.7246 c.2.1.5,d.162.1.1 108112,108113 1d4fA 431 0.8299 c.2.1.4,c.23.12.3 30110,31370 1lldA 319 0.8332 c.2.1.5,d.162.1.1 30177,42144 1psdA 409 0.8334 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1xwfA 431 0.8337 c.2.1.4,c.23.12.3 122392,122393 2g76A 335 0.8447 1omoA 322 0.8481 c.2.1.13 104017 1xdwA 331 0.8495 1vllA 334 0.9593 c.2.1.13 108834 1li4A 432 1.040 c.2.1.4,c.23.12.3 84616,84617 1dxy 333 1.083 2hk9A 275 1.093 1pzgA 331 1.200 c.2.1.5,d.162.1.1 95425,95426 1lssA 140 1.203 c.2.1.9 74246 1x7dA 350 1.404 c.2.1.13 114927 2o4cA 380 1.408 1gpjA 404 1.428 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2d0iA 333 1.752 1sc6A 404 1.912 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2dbqA 334 1.992 1qv9A 283 2.079 c.127.1.1 96356 1v8bA 479 2.102 c.2.1.4,c.23.12.3 113564,113565 1xeaA 323 2.261 c.2.1.3,d.81.1.5 109572,109573 1up7A 417 2.600 c.2.1.5,d.162.1.2 113374,113375 1f06A 320 2.718 c.2.1.3,d.81.1.3 59556,59557 1ygyA 529 3.377 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1obbA 480 3.770 c.2.1.5,d.162.1.2 86760,86761 1hyhA 309 3.772 c.2.1.5,d.162.1.1 30150,42117 1vjtA 483 3.877 c.2.1.5,d.162.1.2 100833,100834 2nvwA 479 3.941 c.2.1.3,d.81.1.5 138665,138666 2d5cA 263 3.988 1guzA 310 4.062 c.2.1.5,d.162.1.1 65586,65587 2pi1A 334 4.279 6ldhA 329 4.557 c.2.1.5,d.162.1.1 30161,42128 2gcgA 330 4.576 2eggA 297 4.999 2nloA 302 5.037 1nytA 271 5.124 c.2.1.7,c.58.1.5 86417,86418 2i6tA 303 5.208 2ewdA 317 5.381 1nvtA 287 6.018 c.2.1.7,c.58.1.5 86270,86271 1lehA 364 6.282 c.2.1.7,c.58.1.1 30268,33916 1gcuA 295 6.385 c.2.1.3,d.81.1.4 30063,39978 1pjcA 361 6.739 c.2.1.4,c.23.12.2 30101,31361 1a5zA 319 6.811 c.2.1.5,d.162.1.1 30181,42148 1s6yA 450 7.040 c.2.1.5,d.162.1.2 105314,105315 2hmvA 144 7.561 c.2.1.9 136615 1p77A 272 7.932 c.2.1.7,c.58.1.5 94214,94215 2vhxA 377 8.771 2cukA 311 8.925 1npyA 271 9.163 c.2.1.7,c.58.1.5 85995,85996 2axqA 467 9.185 1qp8A 303 9.260 c.2.1.4,c.23.12.1 30092,31352 2v7pA 310 9.460 1lsuA 147 9.714 c.2.1.9 74250 2g1uA 155 9.96 1j5pA 253 10.04 d.81.1.3,c.2.1.3 71577,83092 1dxyA 333 10.42 c.2.1.4,c.23.12.1 30094,31354 2eklA 313 10.55 2d59A 144 12.38 c.2.1.8 131266 1vknA 351 13.29 c.2.1.3,d.81.1.1 108676,108677 1iukA 140 14.06 c.2.1.8 83712 3c85A 183 14.10 2gptA 523 14.75 1hdoA 206 15.04 c.2.1.2 60965 2ho3A 325 15.06 2vojA 371 16.39 2dc1A 236 16.70 2glxA 332 17.66 1c1dA 355 18.64 c.2.1.7,c.58.1.1 30270,33918 1ez4A 318 18.82 c.2.1.5,d.162.1.1 64917,64918 2csuA 457 19.31 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1drw 273 20.04 1ofgA 381 21.63 c.2.1.3,d.81.1.5 30064,39979 1luaA 287 21.94 c.2.1.7,c.58.1.4 78216,78217 2aefA 234 22.06 2o7sA 523 22.06 1h6dA 433 22.46 c.2.1.3,d.81.1.5 65656,65657 2czcA 334 22.49 d.81.1.1 131044 2cmdA 312 23.04 c.2.1.5,d.162.1.1 30135,42102 1nvmB 312 23.25 c.2.1.3,d.81.1.1 86251,86252 1scuA 288 23.68 c.2.1.8,c.23.4.1 30307,31135 2nqtA 352 24.30 2q4eA 362 27.11 3c1aA 315 28.22 1a4iA 301 28.83 c.2.1.7,c.58.1.2 30278,33926 1lc0A 294 29.20 c.2.1.3,d.81.1.4 73823,73824 2ph5A 480 29.59 2hjsA 340 29.91 c.2.1.3,d.81.1.1 136547,136548 1drwA 273 30.56 c.2.1.3,d.81.1.3 30057,39972 2g17A 337 31.70 c.2.1.3,d.81.1.1 134512,134513 2gz1A 366 32.17 c.2.1.3,d.81.1.1 135887,135888 2p2sA 336 35.12 1k2wA 256 36.71 c.2.1.2 90927 2ozpA 345 36.80 1vi2A 300 40.92 c.2.1.7,c.58.1.5 100726,100727 1zud1 251 42.02 3ceaA 346 42.78 1xq6A 253 45.09 c.2.1.2 115829 1l7dA 384 45.11 c.2.1.4,c.23.12.2 77774,77775 1y81A 138 45.91 c.2.1.8 122731 1xhlA 297 49.39 c.2.1.2 109591 2exxA 306 49.40 1rydA 387 50.01 c.2.1.3,d.81.1.5 118801,118802 1x7gA 261 50.34 c.2.1.2 114929 1qydA 313 54.34 c.2.1.2 96583 1gegA 256 59.02 c.2.1.2 29888 1jw9B 249 59.19 c.111.1.1 67377 1xkqA 280 59.86 c.2.1.2 115417 1spxA 278 60.73 c.2.1.2 98958 2ag5A 246 63.64 c.2.1.2 126719 1yb1A 272 63.69 c.2.1.2 116599 1xseA 295 64.49 c.2.1.2 115925 1ydeA 270 66.19 c.2.1.2 122980 2q49A 359 66.40 c.2.1.3,d.81.1.1 139831,139832 2z1nA 260 67.79 1rkxA 357 68.97 c.2.1.2 97631 1yxmA 303 70.27 c.2.1.2 124192 2v3aA 384 72.46 1qycA 308 74.98 c.2.1.2 96581 2bryA 497 75.05 1vl8A 267 78.86 c.2.1.2 108733 1fmcA 255 79.02 c.2.1.2 29856 1xu9A 286 80.10 c.2.1.2 116052 1pwxA 254 81.52 c.2.1.2 95262 2o23A 265 82.22 c.2.1.2 138884 1ja9A 274 83.55 c.2.1.2 62817 1e7wA 291 84.93 c.2.1.2 59373 1w6uA 302 85.37 c.2.1.2 114288 2a4kA 263 87.80 c.2.1.2 126156 2jahA 247 88.46 1b16A 254 89.20 c.2.1.2 29875 2hsjA 214 89.39