# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 3.26e-12 2h78A 302 5.14e-12 1vpdA 299 2.03e-11 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 2.58e-11 2rcyA 262 4.36e-11 2ahrA 259 4.89e-11 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 9.83e-11 2pgdA 482 1.40e-10 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 1.58e-10 a.100.1.12,c.2.1.6 132772,132773 2p4qA 497 3.36e-10 2graA 277 3.39e-10 1yqgA 263 3.64e-10 2cvzA 289 5.42e-10 a.100.1.1,c.2.1.6 130890,130891 2g5cA 281 1.07e-09 a.100.1.12,c.2.1.6 134646,134647 2pv7A 298 1.41e-09 1np3A 338 3.47e-09 a.100.1.2,c.2.1.6 85946,85947 2pgd 482 4.36e-09 1pgjA 478 6.72e-09 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 3.26e-08 1i36A 264 7.89e-08 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 9.21e-08 a.100.1.7,c.2.1.6 68857,68858 1bg6 359 9.22e-08 1yrlA 491 2.54e-07 1txgA 335 3.35e-07 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 4.71e-07 a.100.1.2,c.2.1.6 18785,30182 1evyA 366 8.69e-07 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 1.05e-06 1zejA 293 1.65e-06 2o3jA 481 2.04e-06 1mv8A 436 5.18e-06 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dljA 402 6.01e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 7.71e-06 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 1.16e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 3.13e-05 1jayA 212 8.27e-05 c.2.1.6 66478 1zcjA 463 9.87e-05 1bg6A 359 0.000681 a.100.1.5,c.2.1.6 18810,30214 1ff9A 450 0.001680 c.2.1.3,d.81.1.2 30039,39954 2dpoA 319 0.002978 1x0vA 354 0.004320 1gdhA 320 0.01039 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.01128 c.2.1.4,c.23.12.1 30088,31348 2qytA 317 0.02672 2fssA 365 0.03838 1mx3A 347 0.04317 c.2.1.4,c.23.12.1 79638,79639 2b0jA 358 0.04327 a.100.1.11,c.2.1.6 127639,127640 1tltA 319 0.04674 c.2.1.3,d.81.1.5 107135,107136 1wwkA 307 0.05302 1u8xX 472 0.06156 c.2.1.5,d.162.1.2 107741,107742 2j6iA 364 0.06776 1t2dA 322 0.08524 c.2.1.5,d.162.1.1 99084,99085 1j4aA 333 0.08712 c.2.1.4,c.23.12.1 71502,71503 1xwfA 431 0.09809 c.2.1.4,c.23.12.3 122392,122393 2hk9A 275 0.1096 2g76A 335 0.1149 1d4fA 431 0.1183 c.2.1.4,c.23.12.3 30110,31370 1uxjA 309 0.1292 c.2.1.5,d.162.1.1 108112,108113 1psdA 409 0.1344 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1vllA 334 0.1376 c.2.1.13 108834 1xdwA 331 0.1376 1ldg 316 0.1460 1lldA 319 0.1469 c.2.1.5,d.162.1.1 30177,42144 1li4A 432 0.1470 c.2.1.4,c.23.12.3 84616,84617 1ur5A 309 0.1488 c.2.1.5,d.162.1.1 99807,99808 1lssA 140 0.1767 c.2.1.9 74246 1omoA 322 0.1768 c.2.1.13 104017 1dxy 333 0.1781 1x7dA 350 0.1997 c.2.1.13 114927 1gpjA 404 0.2020 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2dbqA 334 0.2056 1pzgA 331 0.2098 c.2.1.5,d.162.1.1 95425,95426 1xeaA 323 0.2159 c.2.1.3,d.81.1.5 109572,109573 2d0iA 333 0.2406 1up6A 416 0.2420 c.2.1.5,d.162.1.2 107976,107977 1v8bA 479 0.2693 c.2.1.4,c.23.12.3 113564,113565 1sc6A 404 0.2916 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2o4cA 380 0.4107 2nvwA 479 0.6873 c.2.1.3,d.81.1.5 138665,138666 1guzA 310 0.7439 c.2.1.5,d.162.1.1 65586,65587 2pi1A 334 0.7461 1qp8A 303 0.7580 c.2.1.4,c.23.12.1 30092,31352 1qv9A 283 0.7709 c.127.1.1 96356 2gcgA 330 0.7760 1nytA 271 0.7953 c.2.1.7,c.58.1.5 86417,86418 1ygyA 529 0.8043 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1up7A 417 0.8177 c.2.1.5,d.162.1.2 113374,113375 1f06A 320 0.8180 c.2.1.3,d.81.1.3 59556,59557 2vhxA 377 0.8276 2d5cA 263 0.8472 1obbA 480 0.8956 c.2.1.5,d.162.1.2 86760,86761 1hyhA 309 0.9328 c.2.1.5,d.162.1.1 30150,42117 2ewdA 317 0.996 2axqA 467 1.187 1vjtA 483 1.239 c.2.1.5,d.162.1.2 100833,100834 6ldhA 329 1.247 c.2.1.5,d.162.1.1 30161,42128 1s6yA 450 1.392 c.2.1.5,d.162.1.2 105314,105315 2nloA 302 1.563 1lehA 364 1.604 c.2.1.7,c.58.1.1 30268,33916 1c1dA 355 1.613 c.2.1.7,c.58.1.1 30270,33918 2hmvA 144 1.621 c.2.1.9 136615 2i6tA 303 1.730 1gcuA 295 1.821 c.2.1.3,d.81.1.4 30063,39978 2eklA 313 1.830 2eggA 297 1.872 2vojA 371 1.965 2cukA 311 1.970 1pjcA 361 1.971 c.2.1.4,c.23.12.2 30101,31361 1lsuA 147 2.086 c.2.1.9 74250 2d59A 144 2.148 c.2.1.8 131266 2g1uA 155 2.158 1p77A 272 2.159 c.2.1.7,c.58.1.5 94214,94215 1nvtA 287 2.201 c.2.1.7,c.58.1.5 86270,86271 1npyA 271 2.309 c.2.1.7,c.58.1.5 85995,85996 2aefA 234 2.470 1dxyA 333 2.583 c.2.1.4,c.23.12.1 30094,31354 2glxA 332 2.931 3c85A 183 2.976 2ho3A 325 3.186 1a5zA 319 3.352 c.2.1.5,d.162.1.1 30181,42148 2gptA 523 3.574 2v7pA 310 3.734 2dc1A 236 3.975 1iukA 140 4.382 c.2.1.8 83712 1a4iA 301 5.101 c.2.1.7,c.58.1.2 30278,33926 2o7sA 523 5.470 1j5pA 253 5.594 d.81.1.3,c.2.1.3 71577,83092 2q4eA 362 5.963 1ez4A 318 5.982 c.2.1.5,d.162.1.1 64917,64918 1ofgA 381 6.349 c.2.1.3,d.81.1.5 30064,39979 1y81A 138 6.499 c.2.1.8 122731 1vknA 351 6.672 c.2.1.3,d.81.1.1 108676,108677 2ph5A 480 6.915 1h6dA 433 7.362 c.2.1.3,d.81.1.5 65656,65657 1hdoA 206 7.392 c.2.1.2 60965 2csuA 457 7.749 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2p2sA 336 7.784 3ceaA 346 7.820 3c1aA 315 7.822 1scuA 288 8.789 c.2.1.8,c.23.4.1 30307,31135 1luaA 287 9.269 c.2.1.7,c.58.1.4 78216,78217 2cmdA 312 10.23 c.2.1.5,d.162.1.1 30135,42102 1nvmB 312 10.50 c.2.1.3,d.81.1.1 86251,86252 1lc0A 294 11.20 c.2.1.3,d.81.1.4 73823,73824 1drw 273 11.67 1rydA 387 11.68 c.2.1.3,d.81.1.5 118801,118802 2czcA 334 11.87 d.81.1.1 131044 1l7dA 384 11.94 c.2.1.4,c.23.12.2 77774,77775 1vi2A 300 15.56 c.2.1.7,c.58.1.5 100726,100727 2z1nA 260 15.92 1drwA 273 16.22 c.2.1.3,d.81.1.3 30057,39972 1qydA 313 17.31 c.2.1.2 96583 1k2wA 256 18.31 c.2.1.2 90927 1b0aA 288 18.76 c.2.1.7,c.58.1.2 30286,33934 1zud1 251 20.09 2v3aA 384 20.49 2g17A 337 20.88 c.2.1.3,d.81.1.1 134512,134513 2exxA 306 21.11 1xhlA 297 22.00 c.2.1.2 109591 2nqtA 352 22.32 2hjsA 340 23.78 c.2.1.3,d.81.1.1 136547,136548 2q49A 359 25.39 c.2.1.3,d.81.1.1 139831,139832 1xcbA 211 25.76 a.4.5.38,c.2.1.12 109552,109553 1k6xA 352 25.81 c.2.1.2 68238 2o4uX 334 27.22 2pd6A 264 28.28 1gegA 256 28.36 c.2.1.2 29888 1zh8A 340 28.37 c.2.1.3,d.81.1.5 125077,125078 1jw9B 249 28.79 c.111.1.1 67377 1xq6A 253 29.13 c.2.1.2 115829 2bryA 497 29.92 1pwxA 254 30.10 c.2.1.2 95262 2r6jA 318 31.13 1xseA 295 31.23 c.2.1.2 115925 2ozpA 345 31.39 2ixaA 444 31.40 1ydeA 270 31.95 c.2.1.2 122980 1pjqA 457 32.15 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2a4kA 263 32.47 c.2.1.2 126156 1yb1A 272 33.15 c.2.1.2 116599 1hxhA 253 33.29 c.2.1.2 76725 1x7gA 261 33.47 c.2.1.2 114929 1uufA 369 33.53 b.35.1.2,c.2.1.1 100006,100007 1xkqA 280 34.24 c.2.1.2 115417 2dt5A 211 34.47 a.4.5.38,c.2.1.12 131708,131709 1q7bA 244 34.72 c.2.1.2 96026 1rkxA 357 35.30 c.2.1.2 97631 1fmcA 255 35.66 c.2.1.2 29856 2gasA 307 36.18 1zk4A 251 36.61 c.2.1.2 125176 1l1eA 287 37.06 c.66.1.18 73454 1nffA 260 37.45 c.2.1.2 80457 2gz1A 366 37.96 c.2.1.3,d.81.1.1 135887,135888 1w6uA 302 38.16 c.2.1.2 114288 1zmtA 254 38.74 c.2.1.2 125363 5nul 138 41.88 1yxmA 303 42.20 c.2.1.2 124192 1n7hA 381 42.90 c.2.1.2 80250 1x13A 401 43.11 2ag5A 246 43.24 c.2.1.2 126719 1spxA 278 43.80 c.2.1.2 98958 2o23A 265 44.15 c.2.1.2 138884 1qycA 308 45.01 c.2.1.2 96581 2bzgA 232 45.37 c.66.1.36 129559 1ja9A 274 46.09 c.2.1.2 62817 2c5aA 379 47.14 c.2.1.2 129894 1hdcA 253 47.30 c.2.1.2 29862 2fdxA 138 47.31 c.23.5.1 31192 1e7wA 291 47.39 c.2.1.2 59373 2jahA 247 48.06 2qa1A 500 48.86 1vl8A 267 50.63 c.2.1.2 108733 2gdzA 267 50.88 c.2.1.2 135043 1pl8A 356 51.52 b.35.1.2,c.2.1.1 94878,94879 2yx0A 342 51.89 1cydA 244 51.90 c.2.1.2 29825 2r00A 336 53.98 2pnfA 248 54.64 1kewA 361 55.46 c.2.1.2 68544 1h5qA 265 55.75 c.2.1.2 60643 2bgkA 278 56.46 c.2.1.2 128480 1xu9A 286 56.97 c.2.1.2 116052 1cf2O 337 58.55 c.2.1.3,d.81.1.1 29994,39909 1bxkA 355 59.76 c.2.1.2 29803 2ekpA 239 60.31 1zmdA 474 60.55 1b16A 254 61.89 c.2.1.2 29875 1y1pA 342 62.11 c.2.1.2 122550 1orrA 347 62.51 c.2.1.2 93460 1i2cA 404 62.60 c.2.1.2 83666 1t2aA 375 63.35 c.2.1.2 99078 2hsjA 214 64.99 2gqwA 408 65.65 1e3jA 352 66.12 b.35.1.2,c.2.1.1 24765,29781 2cduA 452 66.42 2r0cA 549 66.60 1xg5A 279 67.31 c.2.1.2 115277 1eyzA 392 67.56 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 3bioA 304 68.99 1gtmA 419 69.20 c.2.1.7,c.58.1.1 30223,33871 1e6uA 321 70.85 c.2.1.2 29805 1l9cA 389 71.37 c.3.1.2,d.16.1.3 77815,77816 2cf5A 357 72.13 2ph3A 245 72.56 1pbeA 394 73.20 c.3.1.2,d.16.1.2 30338,37869 1bdbA 277 73.78 c.2.1.2 29874 2q46A 253 74.50 c.2.1.2 139825 1fl2A 310 74.62 c.3.1.5,c.3.1.5 59869,59870 2b5wA 357 75.94 2gf3A 389 76.17 c.3.1.2,d.16.1.3 135070,135071 1xgkA 352 77.56 c.2.1.2 115286 1e6wA 260 77.59 c.2.1.2 59326 1yqzA 438 81.71 1kjqA 391 82.17 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1zk7A 467 84.69 1nhp 447 84.74 2nwqA 272 85.87 3ladA 476 86.01 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1y56B 382 86.87 1dv2A 452 87.85 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2c29D 337 88.42 1othA 321 89.30 c.78.1.1,c.78.1.1 35260,35261 1b6rA 355 89.48 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493