# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 1.11e-06 2h78A 302 1.74e-06 1vpdA 299 4.40e-06 a.100.1.1,c.2.1.6 113951,113952 2pgdA 482 7.36e-06 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 8.28e-06 2cvzA 289 2.04e-05 a.100.1.1,c.2.1.6 130890,130891 2ahrA 259 2.19e-05 a.100.1.10,c.2.1.6 126775,126776 2f1kA 279 2.26e-05 a.100.1.12,c.2.1.6 132772,132773 2rcyA 262 2.36e-05 2izzA 322 2.96e-05 2graA 277 3.84e-05 2i76A 276 3.87e-05 1pgjA 478 5.06e-05 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 6.06e-05 1yqgA 263 6.21e-05 2g5cA 281 6.88e-05 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 0.000155 a.100.1.2,c.2.1.6 85946,85947 2pv7A 298 0.000164 1ks9A 291 0.000277 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.000352 2ew2A 316 0.000576 1txgA 335 0.000646 a.100.1.6,c.2.1.6 112775,112776 3c24A 286 0.000903 1i36A 264 0.000949 a.100.1.8,c.2.1.6 71108,71109 1evyA 366 0.001429 a.100.1.6,c.2.1.6 18811,30215 1bg6 359 0.001598 1qmgA 524 0.002994 a.100.1.2,c.2.1.6 18785,30182 1zejA 293 0.004664 1f0yA 302 0.004693 a.100.1.3,c.2.1.6 18793,30197 1z82A 335 0.004829 2o3jA 481 0.005256 1dljA 402 0.01965 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 0.01979 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zcjA 463 0.02328 1jayA 212 0.02825 c.2.1.6 66478 1bg6A 359 0.05540 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.08900 1ff9A 450 0.1523 c.2.1.3,d.81.1.2 30039,39954 1mv8A 436 0.1657 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2nacA 393 0.2107 c.2.1.4,c.23.12.1 30088,31348 1tltA 319 0.2445 c.2.1.3,d.81.1.5 107135,107136 2dpoA 319 0.2580 1gdhA 320 0.2951 c.2.1.4,c.23.12.1 30095,31355 1mx3A 347 0.3171 c.2.1.4,c.23.12.1 79638,79639 1vllA 334 0.3309 c.2.1.13 108834 2qytA 317 0.3603 1li4A 432 0.4713 c.2.1.4,c.23.12.3 84616,84617 1d4fA 431 0.5340 c.2.1.4,c.23.12.3 30110,31370 1omoA 322 0.5499 c.2.1.13 104017 1v8bA 479 0.5521 c.2.1.4,c.23.12.3 113564,113565 2fssA 365 0.5638 2g76A 335 0.5825 1lldA 319 0.6489 c.2.1.5,d.162.1.1 30177,42144 1psdA 409 0.6683 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1wwkA 307 0.6709 2hk9A 275 0.8252 1x7dA 350 0.9315 c.2.1.13 114927 2dbqA 334 0.9364 1j4aA 333 0.9566 c.2.1.4,c.23.12.1 71502,71503 1xdwA 331 0.9660 1xwfA 431 1.016 c.2.1.4,c.23.12.3 122392,122393 2d0iA 333 1.058 2j6iA 364 1.102 1t2dA 322 1.194 c.2.1.5,d.162.1.1 99084,99085 1xeaA 323 1.225 c.2.1.3,d.81.1.5 109572,109573 1gpjA 404 1.228 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1pzgA 331 1.340 c.2.1.5,d.162.1.1 95425,95426 1dxy 333 1.359 2b0jA 358 1.382 a.100.1.11,c.2.1.6 127639,127640 1ygyA 529 1.428 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1ldg 316 1.544 1uxjA 309 1.748 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 1.794 c.2.1.5,d.162.1.1 99807,99808 1sc6A 404 2.225 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1gcuA 295 2.558 c.2.1.3,d.81.1.4 30063,39978 2gcgA 330 2.642 1u8xX 472 2.869 c.2.1.5,d.162.1.2 107741,107742 2pi1A 334 2.950 6ldhA 329 2.970 c.2.1.5,d.162.1.1 30161,42128 2ewdA 317 3.022 1nytA 271 3.052 c.2.1.7,c.58.1.5 86417,86418 2nvwA 479 3.420 c.2.1.3,d.81.1.5 138665,138666 2eggA 297 3.853 1hyhA 309 3.854 c.2.1.5,d.162.1.1 30150,42117 3ceaA 346 3.983 2o4cA 380 4.111 2g17A 337 4.210 c.2.1.3,d.81.1.1 134512,134513 1lssA 140 4.393 c.2.1.9 74246 2d5cA 263 4.413 2glxA 332 4.594 1ez4A 318 4.679 c.2.1.5,d.162.1.1 64917,64918 1up7A 417 4.933 c.2.1.5,d.162.1.2 113374,113375 3c1aA 315 5.007 2v7pA 310 5.339 2vojA 371 5.550 1guzA 310 5.608 c.2.1.5,d.162.1.1 65586,65587 1ofgA 381 5.627 c.2.1.3,d.81.1.5 30064,39979 2q49A 359 5.775 c.2.1.3,d.81.1.1 139831,139832 1up6A 416 5.822 c.2.1.5,d.162.1.2 107976,107977 1s6yA 450 5.850 c.2.1.5,d.162.1.2 105314,105315 2ho3A 325 5.884 1zh8A 340 6.021 c.2.1.3,d.81.1.5 125077,125078 2axqA 467 6.117 2nloA 302 6.742 1dxyA 333 6.808 c.2.1.4,c.23.12.1 30094,31354 2vhxA 377 7.110 2hmvA 144 7.143 c.2.1.9 136615 2g1uA 155 7.302 1vjtA 483 7.359 c.2.1.5,d.162.1.2 100833,100834 2q4eA 362 7.391 2dc1A 236 7.628 2p2sA 336 7.692 1lehA 364 7.754 c.2.1.7,c.58.1.1 30268,33916 1nvmB 312 8.267 c.2.1.3,d.81.1.1 86251,86252 1qp8A 303 8.358 c.2.1.4,c.23.12.1 30092,31352 2i6tA 303 8.625 1hdoA 206 8.756 c.2.1.2 60965 2eklA 313 8.774 2r6jA 318 8.843 2o4uX 334 8.934 1f06A 320 9.151 c.2.1.3,d.81.1.3 59556,59557 2gptA 523 9.560 1npyA 271 10.22 c.2.1.7,c.58.1.5 85995,85996 1luaA 287 10.30 c.2.1.7,c.58.1.4 78216,78217 1vknA 351 10.62 c.2.1.3,d.81.1.1 108676,108677 1nvtA 287 10.72 c.2.1.7,c.58.1.5 86270,86271 2nqtA 352 10.90 2ozpA 345 10.91 1q7gA 359 10.96 c.2.1.3,d.81.1.2 96038,96039 2ph5A 480 11.06 1h6dA 433 11.12 c.2.1.3,d.81.1.5 65656,65657 1a5zA 319 11.15 c.2.1.5,d.162.1.1 30181,42148 1pjcA 361 11.90 c.2.1.4,c.23.12.2 30101,31361 1j5pA 253 12.02 d.81.1.3,c.2.1.3 71577,83092 1lsuA 147 12.15 c.2.1.9 74250 1p77A 272 12.16 c.2.1.7,c.58.1.5 94214,94215 2o7sA 523 12.52 1qydA 313 12.74 c.2.1.2 96583 1c1dA 355 13.61 c.2.1.7,c.58.1.1 30270,33918 1drw 273 14.26 2hjsA 340 14.45 c.2.1.3,d.81.1.1 136547,136548 1obbA 480 14.83 c.2.1.5,d.162.1.2 86760,86761 2aefA 234 15.85 2gz1A 366 16.81 c.2.1.3,d.81.1.1 135887,135888 1drwA 273 17.87 c.2.1.3,d.81.1.3 30057,39972 1qv9A 283 18.36 c.127.1.1 96356 1n7hA 381 18.49 c.2.1.2 80250 2gasA 307 18.76 1lc0A 294 19.87 c.2.1.3,d.81.1.4 73823,73824 1rydA 387 20.06 c.2.1.3,d.81.1.5 118801,118802 1xq6A 253 20.08 c.2.1.2 115829 1k6xA 352 20.18 c.2.1.2 68238 1vi2A 300 21.88 c.2.1.7,c.58.1.5 100726,100727 2ixaA 444 22.65 1qycA 308 22.66 c.2.1.2 96581 3c85A 183 22.83 1l7dA 384 23.07 c.2.1.4,c.23.12.2 77774,77775 2cukA 311 24.59 1id1A 153 26.15 c.2.1.9 62286 1ek6A 348 26.39 c.2.1.2 29800 2d59A 144 28.06 c.2.1.8 131266 1iukA 140 28.63 c.2.1.8 83712 2r00A 336 30.63 1a4iA 301 31.26 c.2.1.7,c.58.1.2 30278,33926 1bdb 277 31.81 1t2aA 375 33.87 c.2.1.2 99078 2q46A 253 35.86 c.2.1.2 139825 1hxhA 253 36.43 c.2.1.2 76725 1e6wA 260 37.06 c.2.1.2 59326 2cmdA 312 38.76 c.2.1.5,d.162.1.1 30135,42102 2c5aA 379 38.81 c.2.1.2 129894 2bllA 345 41.30 c.2.1.2 128733 1ja9A 274 41.87 c.2.1.2 62817 2exxA 306 42.34 1bdbA 277 42.65 c.2.1.2 29874 1t4bA 367 43.70 c.2.1.3,d.81.1.1 106406,106407 1rpnA 335 45.17 c.2.1.2 97708 1nffA 260 45.61 c.2.1.2 80457 2csuA 457 46.02 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2pzmA 330 46.03 3c8mA 331 47.90 1o6zA 303 47.94 c.2.1.5,d.162.1.1 81107,81108 1orrA 347 48.31 c.2.1.2 93460 2b69A 343 49.97 c.2.1.2 127974 2o23A 265 50.28 c.2.1.2 138884 1x7gA 261 51.31 c.2.1.2 114929 1h5qA 265 51.94 c.2.1.2 60643 1othA 321 52.57 c.78.1.1,c.78.1.1 35260,35261 1hdcA 253 53.28 c.2.1.2 29862 2czcA 334 58.26 d.81.1.1 131044 1xg5A 279 58.39 c.2.1.2 115277 1q7bA 244 59.54 c.2.1.2 96026 3bioA 304 61.16 1sb8A 352 64.70 c.2.1.2 105410 1b7gO 340 64.98 c.2.1.3,d.81.1.1 29992,39907 1x13A 401 65.28 1zemA 262 65.73 c.2.1.2 124984 1gegA 256 66.48 c.2.1.2 29888 1hyuA 521 67.28 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1qsgA 265 70.27 c.2.1.2 29935 1kjqA 391 70.94 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1b0aA 288 71.28 c.2.1.7,c.58.1.2 30286,33934 1rkxA 357 71.37 c.2.1.2 97631 1vl6A 388 72.42 c.2.1.7,c.58.1.3 108724,108725 1brmA 367 72.77 c.2.1.3,d.81.1.1 30030,39945 1mb4A 370 73.95 c.2.1.3,d.81.1.1 78908,78909 2z1mA 345 75.33 1y81A 138 77.37 c.2.1.8 122731 1eyzA 392 77.79 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1fl2A 310 78.62 c.3.1.5,c.3.1.5 59869,59870 1u9jA 358 79.68 c.2.1.2 113243 1zud1 251 82.34 1cf2O 337 83.82 c.2.1.3,d.81.1.1 29994,39909 2yutA 207 83.85 1n5dA 288 86.22 c.2.1.2 80030 1nhp 447 86.75 2r0cA 549 86.90 1yb1A 272 86.90 c.2.1.2 116599 2ag5A 246 87.54 c.2.1.2 126719 2blnA 305 87.74 b.46.1.1,c.65.1.1 128734,128735 2gdzA 267 88.16 c.2.1.2 135043 1e7wA 291 89.55 c.2.1.2 59373