# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 9.91e-06 2h78A 302 1.87e-05 2i76A 276 3.10e-05 1vpdA 299 4.21e-05 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 4.55e-05 a.100.1.10,c.2.1.6 126775,126776 2pgdA 482 4.83e-05 a.100.1.1,c.2.1.6 18778,30190 2rcyA 262 5.55e-05 2izzA 322 5.68e-05 2p4qA 497 6.22e-05 2graA 277 6.36e-05 2f1kA 279 7.96e-05 a.100.1.12,c.2.1.6 132772,132773 1yqgA 263 9.39e-05 2cvzA 289 0.000120 a.100.1.1,c.2.1.6 130890,130891 2pv7A 298 0.000223 2g5cA 281 0.000235 a.100.1.12,c.2.1.6 134646,134647 2pgd 482 0.000369 1pgjA 478 0.000518 a.100.1.1,c.2.1.6 18783,30195 1np3A 338 0.000551 a.100.1.2,c.2.1.6 85946,85947 3c24A 286 0.001074 1ks9A 291 0.001712 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.002492 1i36A 264 0.003015 a.100.1.8,c.2.1.6 71108,71109 1txgA 335 0.003168 a.100.1.6,c.2.1.6 112775,112776 1bg6 359 0.003726 1evyA 366 0.005059 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 0.005210 1qmgA 524 0.005422 a.100.1.2,c.2.1.6 18785,30182 1zejA 293 0.01105 2o3jA 481 0.01374 1f0yA 302 0.01434 a.100.1.3,c.2.1.6 18793,30197 1z82A 335 0.02169 1dljA 402 0.02540 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 0.02788 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1mv8A 436 0.03964 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1zcjA 463 0.06034 1jayA 212 0.08440 c.2.1.6 66478 1ff9A 450 0.2423 c.2.1.3,d.81.1.2 30039,39954 1bg6A 359 0.2794 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.2890 2dpoA 319 0.3043 2nacA 393 0.8359 c.2.1.4,c.23.12.1 30088,31348 2qytA 317 1.015 1gdhA 320 1.053 c.2.1.4,c.23.12.1 30095,31355 1tltA 319 1.342 c.2.1.3,d.81.1.5 107135,107136 1mx3A 347 1.360 c.2.1.4,c.23.12.1 79638,79639 2fssA 365 1.458 1u8xX 472 1.555 c.2.1.5,d.162.1.2 107741,107742 2g76A 335 1.567 1vllA 334 1.638 c.2.1.13 108834 2j6iA 364 1.761 1j4aA 333 1.802 c.2.1.4,c.23.12.1 71502,71503 2b0jA 358 1.859 a.100.1.11,c.2.1.6 127639,127640 1lldA 319 2.005 c.2.1.5,d.162.1.1 30177,42144 1psdA 409 2.006 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1xdwA 331 2.057 1wwkA 307 2.065 1gpjA 404 2.257 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1d4fA 431 2.340 c.2.1.4,c.23.12.3 30110,31370 1omoA 322 2.508 c.2.1.13 104017 1x7dA 350 2.667 c.2.1.13 114927 2d0iA 333 2.977 1xwfA 431 3.029 c.2.1.4,c.23.12.3 122392,122393 1s6yA 450 3.108 c.2.1.5,d.162.1.2 105314,105315 1li4A 432 3.202 c.2.1.4,c.23.12.3 84616,84617 2hk9A 275 3.360 1pzgA 331 3.364 c.2.1.5,d.162.1.1 95425,95426 2dbqA 334 3.398 1uxjA 309 3.433 c.2.1.5,d.162.1.1 108112,108113 1dxy 333 3.466 1ur5A 309 3.471 c.2.1.5,d.162.1.1 99807,99808 1ldg 316 3.487 1gcuA 295 3.612 c.2.1.3,d.81.1.4 30063,39978 1xeaA 323 3.737 c.2.1.3,d.81.1.5 109572,109573 1t2dA 322 3.796 c.2.1.5,d.162.1.1 99084,99085 1up6A 416 4.743 c.2.1.5,d.162.1.2 107976,107977 1v8bA 479 4.886 c.2.1.4,c.23.12.3 113564,113565 1ygyA 529 4.950 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1lssA 140 5.325 c.2.1.9 74246 1up7A 417 5.350 c.2.1.5,d.162.1.2 113374,113375 1sc6A 404 5.435 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2gcgA 330 5.705 3c1aA 315 6.023 2nvwA 479 6.028 c.2.1.3,d.81.1.5 138665,138666 1nytA 271 6.667 c.2.1.7,c.58.1.5 86417,86418 2glxA 332 6.709 2d5cA 263 6.896 3ceaA 346 7.337 1hyhA 309 7.948 c.2.1.5,d.162.1.1 30150,42117 1guzA 310 8.108 c.2.1.5,d.162.1.1 65586,65587 2eggA 297 8.356 2ewdA 317 8.489 2nloA 302 8.637 1zh8A 340 8.735 c.2.1.3,d.81.1.5 125077,125078 2dc1A 236 8.753 2o4cA 380 9.132 2q4eA 362 9.589 1npyA 271 9.97 c.2.1.7,c.58.1.5 85995,85996 2hmvA 144 10.17 c.2.1.9 136615 2pi1A 334 10.25 1obbA 480 10.91 c.2.1.5,d.162.1.2 86760,86761 1luaA 287 11.30 c.2.1.7,c.58.1.4 78216,78217 2p2sA 336 11.35 1lehA 364 11.39 c.2.1.7,c.58.1.1 30268,33916 1lsuA 147 11.61 c.2.1.9 74250 1qv9A 283 12.07 c.127.1.1 96356 6ldhA 329 12.08 c.2.1.5,d.162.1.1 30161,42128 2gptA 523 12.42 1nvtA 287 12.79 c.2.1.7,c.58.1.5 86270,86271 1j5pA 253 13.11 d.81.1.3,c.2.1.3 71577,83092 1f06A 320 13.13 c.2.1.3,d.81.1.3 59556,59557 1c1dA 355 13.96 c.2.1.7,c.58.1.1 30270,33918 2i6tA 303 14.05 2g1uA 155 14.38 2ho3A 325 14.62 1pjcA 361 14.71 c.2.1.4,c.23.12.2 30101,31361 2o7sA 523 15.03 1p77A 272 16.06 c.2.1.7,c.58.1.5 94214,94215 2o4uX 334 16.06 1vjtA 483 16.21 c.2.1.5,d.162.1.2 100833,100834 1hdoA 206 16.69 c.2.1.2 60965 1qp8A 303 17.11 c.2.1.4,c.23.12.1 30092,31352 1ez4A 318 17.46 c.2.1.5,d.162.1.1 64917,64918 2v7pA 310 17.87 1dxyA 333 17.97 c.2.1.4,c.23.12.1 30094,31354 2vhxA 377 18.46 1a5zA 319 18.78 c.2.1.5,d.162.1.1 30181,42148 2axqA 467 19.31 1nvmB 312 19.98 c.2.1.3,d.81.1.1 86251,86252 1vknA 351 20.64 c.2.1.3,d.81.1.1 108676,108677 2nqtA 352 21.77 2hjsA 340 22.21 c.2.1.3,d.81.1.1 136547,136548 1lc0A 294 22.45 c.2.1.3,d.81.1.4 73823,73824 1rydA 387 22.72 c.2.1.3,d.81.1.5 118801,118802 1vi2A 300 23.63 c.2.1.7,c.58.1.5 100726,100727 2eklA 313 24.06 2czcA 334 28.00 d.81.1.1 131044 2q49A 359 29.60 c.2.1.3,d.81.1.1 139831,139832 2g17A 337 30.19 c.2.1.3,d.81.1.1 134512,134513 2vojA 371 30.47 1ofgA 381 31.18 c.2.1.3,d.81.1.5 30064,39979 2cukA 311 31.37 1drw 273 31.40 2d59A 144 31.43 c.2.1.8 131266 3c85A 183 32.61 2gz1A 366 32.87 c.2.1.3,d.81.1.1 135887,135888 1iukA 140 33.16 c.2.1.8 83712 1k6xA 352 34.45 c.2.1.2 68238 1drwA 273 34.46 c.2.1.3,d.81.1.3 30057,39972 2r6jA 318 34.54 1h6dA 433 34.65 c.2.1.3,d.81.1.5 65656,65657 2aefA 234 35.41 3c8mA 331 38.79 1id1A 153 41.19 c.2.1.9 62286 1xq6A 253 42.08 c.2.1.2 115829 1qydA 313 44.78 c.2.1.2 96583 1a4iA 301 45.38 c.2.1.7,c.58.1.2 30278,33926 2csuA 457 45.97 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2ph5A 480 49.45 2ozpA 345 51.78 2r00A 336 52.02 1t2aA 375 56.43 c.2.1.2 99078 1scuA 288 58.00 c.2.1.8,c.23.4.1 30307,31135 1l7dA 384 58.62 c.2.1.4,c.23.12.2 77774,77775 1yovA 537 59.24 c.111.1.2 123785 1wmaA 276 59.88 c.2.1.2 121042 1x7gA 261 61.88 c.2.1.2 114929 1ys4A 354 64.44 2ixaA 444 64.49 1n7hA 381 65.00 c.2.1.2 80250 2cmdA 312 66.49 c.2.1.5,d.162.1.1 30135,42102 2gasA 307 67.70 2exxA 306 68.75 1nffA 260 68.81 c.2.1.2 80457 1k2wA 256 69.30 c.2.1.2 90927 1gegA 256 71.23 c.2.1.2 29888 2q46A 253 73.35 c.2.1.2 139825 1cf2O 337 73.66 c.2.1.3,d.81.1.1 29994,39909 1hxhA 253 74.28 c.2.1.2 76725 1bdbA 277 77.25 c.2.1.2 29874 1rkxA 357 78.50 c.2.1.2 97631 1y81A 138 80.53 c.2.1.8 122731 1e6wA 260 85.18 c.2.1.2 59326 2c5aA 379 85.68 c.2.1.2 129894 1x13A 401 88.63