# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h78A 302 0.5870 1vpdA 299 0.9249 a.100.1.1,c.2.1.6 113951,113952 1yb4A 295 1.101 2ahrA 259 1.225 a.100.1.10,c.2.1.6 126775,126776 2p4qA 497 1.291 2rcyA 262 1.614 2pgdA 482 1.751 a.100.1.1,c.2.1.6 18778,30190 2cvzA 289 1.810 a.100.1.1,c.2.1.6 130890,130891 2izzA 322 1.908 1yqgA 263 1.965 1pgjA 478 2.040 a.100.1.1,c.2.1.6 18783,30195 2graA 277 2.305 2f1kA 279 2.385 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 2.513 a.100.1.12,c.2.1.6 134646,134647 2i76A 276 2.649 2pgd 482 3.001 1yrlA 491 3.101 1f0yA 302 4.381 a.100.1.3,c.2.1.6 18793,30197 1bg6 359 4.620 2ew2A 316 4.962 1evyA 366 5.429 a.100.1.6,c.2.1.6 18811,30215 3c24A 286 5.806 2pv7A 298 6.004 1i36A 264 6.273 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 6.435 1np3A 338 6.531 a.100.1.2,c.2.1.6 85946,85947 1zcjA 463 6.931 1x0vA 354 7.847 1dliA 402 8.006 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1qmgA 524 8.086 a.100.1.2,c.2.1.6 18785,30182 1txgA 335 8.146 a.100.1.6,c.2.1.6 112775,112776 1ks9A 291 8.630 a.100.1.7,c.2.1.6 68857,68858 1dljA 402 8.831 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zejA 293 9.224 1bg6A 359 9.531 a.100.1.5,c.2.1.6 18810,30214 1mv8A 436 9.756 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2dpoA 319 12.49 2o3jA 481 16.10 2qytA 317 17.05 1jayA 212 19.31 c.2.1.6 66478 2hk9A 275 24.04 1xwfA 431 28.19 c.2.1.4,c.23.12.3 122392,122393 1v8bA 479 29.01 c.2.1.4,c.23.12.3 113564,113565 1d4fA 431 30.62 c.2.1.4,c.23.12.3 30110,31370 1li4A 432 32.00 c.2.1.4,c.23.12.3 84616,84617 1lldA 319 33.37 c.2.1.5,d.162.1.1 30177,42144 2q4eA 362 35.32 3ceaA 346 35.54 2nacA 393 35.85 c.2.1.4,c.23.12.1 30088,31348 1x7dA 350 37.42 c.2.1.13 114927 2glxA 332 38.08 2d5cA 263 38.98 2g76A 335 41.43 2o4uX 334 42.42 2i6tA 303 44.01 1pzgA 331 44.61 c.2.1.5,d.162.1.1 95425,95426 1lehA 364 45.16 c.2.1.7,c.58.1.1 30268,33916 1ldg 316 47.28 1xeaA 323 47.44 c.2.1.3,d.81.1.5 109572,109573 1c1dA 355 47.68 c.2.1.7,c.58.1.1 30270,33918 2eggA 297 51.60 6ldhA 329 52.23 c.2.1.5,d.162.1.1 30161,42128 1t2dA 322 54.95 c.2.1.5,d.162.1.1 99084,99085 1ff9A 450 55.06 c.2.1.3,d.81.1.2 30039,39954 1rydA 387 56.25 c.2.1.3,d.81.1.5 118801,118802 1a5zA 319 56.26 c.2.1.5,d.162.1.1 30181,42148 1nytA 271 56.64 c.2.1.7,c.58.1.5 86417,86418 2nvwA 479 57.18 c.2.1.3,d.81.1.5 138665,138666 1h6dA 433 57.60 c.2.1.3,d.81.1.5 65656,65657 1tltA 319 59.22 c.2.1.3,d.81.1.5 107135,107136 1wwkA 307 61.30 1psdA 409 63.58 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1vllA 334 64.16 c.2.1.13 108834 1uxjA 309 65.58 c.2.1.5,d.162.1.1 108112,108113 1qydA 313 65.72 c.2.1.2 96583 1ofgA 381 65.97 c.2.1.3,d.81.1.5 30064,39979 2ewdA 317 66.01 1ez4A 318 66.09 c.2.1.5,d.162.1.1 64917,64918 2fk8A 318 66.44 c.66.1.18 133648 2v7pA 310 69.82 1mx3A 347 70.88 c.2.1.4,c.23.12.1 79638,79639 2b0jA 358 71.10 a.100.1.11,c.2.1.6 127639,127640 1obbA 480 71.29 c.2.1.5,d.162.1.2 86760,86761 1npyA 271 71.58 c.2.1.7,c.58.1.5 85995,85996 1ur5A 309 71.70 c.2.1.5,d.162.1.1 99807,99808 1ygyA 529 72.70 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1omoA 322 74.78 c.2.1.13 104017 1qycA 308 75.71 c.2.1.2 96581 1zh8A 340 77.01 c.2.1.3,d.81.1.5 125077,125078 1nvmB 312 77.63 c.2.1.3,d.81.1.1 86251,86252 2a4kA 263 77.87 c.2.1.2 126156 1pjcA 361 77.95 c.2.1.4,c.23.12.2 30101,31361 2r6jA 318 78.52 2dbqA 334 78.61 1guzA 310 78.79 c.2.1.5,d.162.1.1 65586,65587 2ho3A 325 79.98 2axqA 467 81.31 1sc6A 404 82.54 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1lssA 140 82.69 c.2.1.9 74246 1l7dA 384 83.40 c.2.1.4,c.23.12.2 77774,77775 1hyhA 309 85.75 c.2.1.5,d.162.1.1 30150,42117 2eklA 313 87.27 1kpgA 287 89.99 c.66.1.18 68735