# List of top-scoring protein chains for T0393.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gpjA 404 4.51e-06 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2i9pA 319 1.23e-05 2gf2A 296 1.79e-05 1yqgA 263 4.86e-05 2cvzA 289 0.000103 a.100.1.1,c.2.1.6 130890,130891 1yb4A 295 0.000118 1vpdA 299 0.000122 a.100.1.1,c.2.1.6 113951,113952 2uyyA 316 0.000386 2eggA 297 0.000574 2ahrA 259 0.000584 a.100.1.10,c.2.1.6 126775,126776 2rcyA 262 0.000599 2hk9A 275 0.000723 2hk8A 269 0.000727 3cumA 302 0.000760 1nytA 271 0.000842 c.2.1.7,c.58.1.5 86417,86418 2p4qA 497 0.000999 1nvtA 287 0.002192 c.2.1.7,c.58.1.5 86270,86271 2iz1A 474 0.003411 2iypA 473 0.003565 2d5cA 263 0.003650 2iyoA 472 0.003744 1pgjA 478 0.004392 a.100.1.1,c.2.1.6 18783,30195 2o7sA 523 0.005157 2pgdA 482 0.005685 a.100.1.1,c.2.1.6 18778,30190 1p77A 272 0.01942 c.2.1.7,c.58.1.5 94214,94215 2izzA 322 0.02994 2graA 277 0.03035 2nloA 302 0.03542 2f1kA 279 0.03874 a.100.1.12,c.2.1.6 132772,132773 2gerA 321 0.03925 2dbqA 334 0.1365 1jayA 212 0.1426 c.2.1.6 66478 2d0iA 333 0.2264 1z82A 335 0.2464 2q4eA 362 0.2472 2i99A 312 0.3332 1x0vA 354 0.4509 1npyA 271 0.4533 c.2.1.7,c.58.1.5 85995,85996 2pv7A 298 0.4759 2o4uX 334 0.5460 1bg6A 359 0.7487 a.100.1.5,c.2.1.6 18810,30214 2ew2A 316 0.7604 1np3A 338 0.7840 a.100.1.2,c.2.1.6 85946,85947 1vi2A 300 0.8704 c.2.1.7,c.58.1.5 100726,100727 1zejA 293 0.8792 2rirA 300 0.8833 1npdA 288 0.8846 c.2.1.7,c.58.1.5 80681,80682 1wpqA 349 0.8850 2plaA 349 1.214 2i76A 276 1.512 1yrlA 491 1.552 2gcgA 330 1.577 2q50A 328 1.580 1v9lA 421 1.584 c.2.1.7,c.58.1.1 113583,113584 1qp8A 303 1.642 c.2.1.4,c.23.12.1 30092,31352 2rafA 209 1.687 1wwkA 307 1.704 1zcjA 463 1.802 1i36A 264 1.976 a.100.1.8,c.2.1.6 71108,71109 2cukA 311 2.017 1hyhA 309 2.155 c.2.1.5,d.162.1.1 30150,42117 2vhvA 377 2.183 2axqA 467 2.186 2vhxA 377 2.330 2vojA 371 2.342 1ff9A 450 2.528 c.2.1.3,d.81.1.2 30039,39954 1pjcA 361 2.629 c.2.1.4,c.23.12.2 30101,31361 1dxyA 333 2.878 c.2.1.4,c.23.12.1 30094,31354 2ho3A 325 2.964 1txgA 335 3.047 a.100.1.6,c.2.1.6 112775,112776 1xdwA 331 3.308 1uufA 369 3.890 b.35.1.2,c.2.1.1 100006,100007 2cd9A 366 4.428 2cdcA 366 4.574 2dldA 337 5.162 c.2.1.4,c.23.12.1 30099,31359 2dvmA 439 5.344 3ceaA 346 5.489 1lsuA 147 5.830 c.2.1.9 74250 2hmvA 144 5.885 c.2.1.9 136615 1yqdA 366 5.958 2j6iA 364 6.040 2fssA 365 6.241 3c24A 286 6.369 1j4aA 333 7.551 c.2.1.4,c.23.12.1 71502,71503 1j49A 333 7.551 c.2.1.4,c.23.12.1 71498,71499 1a5zA 319 8.014 c.2.1.5,d.162.1.1 30181,42148 2pi1A 334 8.208 2glxA 332 8.246 2eezA 369 9.051 2g1uA 155 9.440 1tltA 319 9.485 c.2.1.3,d.81.1.5 107135,107136 2o4cA 380 9.610 1hkuA 358 10.09 c.2.1.4,c.23.12.1 83557,83558 2r2gA 318 10.19 1vllA 334 10.73 c.2.1.13 108834 1omoA 322 10.76 c.2.1.13 104017 2r6jA 318 11.03 2cf5A 357 11.08 1evyA 366 11.52 a.100.1.6,c.2.1.6 18811,30215 1guzA 310 11.79 c.2.1.5,d.162.1.1 65586,65587 2z1nA 260 11.92 2v6bA 304 12.10 1evjA 352 12.32 c.2.1.3,d.81.1.5 30070,39985 1zh8A 340 12.45 c.2.1.3,d.81.1.5 125077,125078 1ygyA 529 12.68 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2hjrA 328 12.82 1mx3A 347 12.86 c.2.1.4,c.23.12.1 79638,79639 1h6dA 433 12.97 c.2.1.3,d.81.1.5 65656,65657 1x7dA 350 12.99 c.2.1.13 114927 1lssA 140 13.04 c.2.1.9 74246 3bioA 304 13.04 1a7aA 432 13.04 c.2.1.4,c.23.12.3 30104,31364 1li4A 432 13.10 c.2.1.4,c.23.12.3 84616,84617 1rydA 387 13.27 c.2.1.3,d.81.1.5 118801,118802 1ofgA 381 13.32 c.2.1.3,d.81.1.5 30064,39979 1gv1A 310 13.78 c.2.1.5,d.162.1.1 65598,65599 1b3rA 431 14.30 c.2.1.4,c.23.12.3 30106,31366 1vknA 351 14.39 c.2.1.3,d.81.1.1 108676,108677 1ez4A 318 14.54 c.2.1.5,d.162.1.1 64917,64918 1xwfA 431 14.73 c.2.1.4,c.23.12.3 122392,122393 2g5cA 281 14.81 a.100.1.12,c.2.1.6 134646,134647 2omeA 336 15.19 1d4fA 431 16.61 c.2.1.4,c.23.12.3 30110,31370 1lldA 319 16.63 c.2.1.5,d.162.1.1 30177,42144 2eklA 313 17.49 2dc1A 236 17.69 3c1aA 315 18.65 1jw9B 249 18.82 c.111.1.1 67377 2g82A 331 19.07 c.2.1.3,d.81.1.1 134746,134747 1piwA 360 20.89 b.35.1.2,c.2.1.1 104156,104157 2vdcG 456 22.00 2haeA 386 22.02 c.2.1.7,c.58.1.3 136278,136279 1vl6A 388 22.06 c.2.1.7,c.58.1.3 108724,108725 2jfgA 445 23.20 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 4uagA 437 24.73 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2ixaA 444 26.67 2c7vA 268 26.85 1zud1 251 29.25 1zfnA 253 29.33 1ldbA 317 29.57 c.2.1.5,d.162.1.1 30174,42141 1ldnA 316 29.60 c.2.1.5,d.162.1.1 30166,42133 2nvuB 805 29.61 c.111.1.2,c.94.1.1 138661,138662 1pr9A 244 29.98 c.2.1.2 95060 1vc2A 331 30.12 c.2.1.3,d.81.1.1 100555,100556 1f06A 320 30.48 c.2.1.3,d.81.1.3 59556,59557 2bi7A 384 30.64 1r4mB 431 30.68 c.111.1.2 97000 1wamA 384 30.68 c.4.1.3,d.16.1.7 120811,120812 2ep5A 350 31.67 2ofpA 320 31.88 a.100.1.7,c.2.1.6 139052,139053 1yovB 444 32.86 c.111.1.2 123786 1tt5B 434 33.84 c.111.1.2 107292 1cj2A 391 34.37 c.3.1.2,d.16.1.2 30351,37882 1gv0A 310 36.10 c.2.1.5,d.162.1.1 65594,65595 1kyqA 274 36.27 c.2.1.11,e.37.1.1 73281,73282 1bvuA 418 37.66 c.2.1.7,c.58.1.1 30226,33874 1cydA 244 38.13 c.2.1.2 29825 1c0pA 363 39.97 c.4.1.2,d.16.1.3 30647,37934 2nvwA 479 41.60 c.2.1.3,d.81.1.5 138665,138666 1ykjA 394 42.13 2ehdA 234 42.29 2ph3A 245 42.83 1mv8A 436 42.91 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1xg5A 279 43.11 c.2.1.2 115277 2ag5A 246 44.52 c.2.1.2 126719 1y8aA 332 47.55 2go1A 401 48.66 2nacA 393 48.75 c.2.1.4,c.23.12.1 30088,31348 1cj3A 392 49.10 c.3.1.2,d.16.1.2 30347,37878 2ekpA 239 49.20 1cj4A 392 49.72 c.3.1.2,d.16.1.2 30345,37876 1oc4A 322 49.89 c.2.1.5,d.162.1.1 92770,92771 2a9fA 398 50.42 1llcA 325 50.62 c.2.1.5,d.162.1.1 30176,42143 2b9wA 424 50.93 2ldxA 331 51.00 c.2.1.5,d.162.1.1 30159,42126 1vl8A 267 53.65 c.2.1.2 108733 1nvmB 312 54.04 c.2.1.3,d.81.1.1 86251,86252 2p9cA 410 54.17 c.2.1.4,c.23.12.1,d.58.18.1 139556,139557,139558 2p9gA 410 54.29 c.2.1.4,c.23.12.1,d.58.18.1 139574,139575,139576 1sc6A 404 55.87 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1yonA 303 56.28 a.100.1.7,c.2.1.6 123780,123781 1ks9A 291 56.66 a.100.1.7,c.2.1.6 68857,68858 1ybaA 410 56.98 c.2.1.4,c.23.12.1,d.58.18.1 122872,122873,122874 1psdA 409 56.99 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1yxmA 303 58.98 c.2.1.2 124192 1cc4A 394 59.89 c.3.1.2,d.16.1.2 30340,37871 1ys4A 354 60.41 1yewA 382 61.32 1vdcA 333 62.13 c.3.1.5,c.3.1.5 30545,30546 2g76A 335 62.31 1lsoA 302 63.35 a.100.1.3,c.2.1.6 91120,91121 1zovA 386 63.69 1mxhA 276 63.84 c.2.1.2 91490 2nwqA 272 64.06 3hadA 308 64.17 a.100.1.3,c.2.1.6 18799,30203 1k0iA 394 65.22 c.3.1.2,d.16.1.2 67942,67943 1bxgA 356 65.27 c.2.1.7,c.58.1.1 30276,33924 1dobA 394 65.66 c.3.1.2,d.16.1.2 30362,37893 1pxbA 394 65.70 c.3.1.2,d.16.1.2 30367,37898 1pbeA 394 65.75 c.3.1.2,d.16.1.2 30338,37869 1luaA 287 65.93 c.2.1.7,c.58.1.4 78216,78217 1c1dB 355 65.96 c.2.1.7,c.58.1.1 30271,33919 1bw9B 356 66.28 c.2.1.7,c.58.1.1 30275,33923 1c1xB 355 66.30 c.2.1.7,c.58.1.1 30273,33921 1iutA 394 66.33 c.3.1.2,d.16.1.2 30355,37886 1pxcA 394 66.38 c.3.1.2,d.16.1.2 30361,37892 1bxgB 356 66.42 c.2.1.7,c.58.1.1 30277,33925 1pxaA 394 67.21 c.3.1.2,d.16.1.2 30366,37897 1j5pA 253 67.68 d.81.1.3,c.2.1.3 71577,83092 2a92A 321 68.19 1gdhA 320 68.24 c.2.1.4,c.23.12.1 30095,31355 1lsjA 302 68.77 a.100.1.3,c.2.1.6 91116,91117 2ewdA 317 68.79 1m75A 302 68.85 a.100.1.3,c.2.1.6 91212,91213 1f17A 310 69.20 a.100.1.3,c.2.1.6 18797,30201 2d4aA 308 69.41 1y81A 138 69.63 c.2.1.8 122731 1f0yA 302 70.67 a.100.1.3,c.2.1.6 18793,30197 1bkwA 394 70.99 c.3.1.2,d.16.1.2 30343,37874 2gn4A 344 71.55 1c1dA 355 72.25 c.2.1.7,c.58.1.1 30270,33918 2v7pA 310 72.51 1pbfA 394 72.88 c.3.1.2,d.16.1.2 30349,37880 1bw9A 356 73.09 c.2.1.7,c.58.1.1 30274,33922 1c1xA 355 73.11 c.2.1.7,c.58.1.1 30272,33920 1bf3A 394 73.24 c.3.1.2,d.16.1.2 30346,37877 1cc6A 394 73.80 c.3.1.2,d.16.1.2 30344,37875 2hdhA 293 74.24 a.100.1.3,c.2.1.6 18795,30199 1pbdA 394 75.57 c.3.1.2,d.16.1.2 30342,37873 1bgnA 394 75.74 c.3.1.2,d.16.1.2 30339,37870 2q3eA 467 76.47 2gsdA 402 76.64 2pnfA 248 76.77 1qmgA 524 77.20 a.100.1.2,c.2.1.6 18785,30182 1gegA 256 77.68 c.2.1.2 29888 1bgjA 394 77.73 c.3.1.2,d.16.1.2 30352,37883 1il0A 302 79.07 a.100.1.3,c.2.1.6 66189,66190 1dljA 402 80.04 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1eq2A 310 80.10 c.2.1.2 29814 1dliA 402 80.75 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1cf2O 337 82.39 c.2.1.3,d.81.1.1 29994,39909 2c07A 285 83.67 c.2.1.2 129577 1m76A 302 85.96 a.100.1.3,c.2.1.6 91216,91217 3hdhA 302 87.51 a.100.1.3,c.2.1.6 18805,30209 2uvdA 246 89.54