# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 0.009127 1vpdA 299 0.009948 a.100.1.1,c.2.1.6 113951,113952 2h78A 302 0.01275 2ahrA 259 0.01287 a.100.1.10,c.2.1.6 126775,126776 1yb4A 295 0.01772 2cvzA 289 0.02030 a.100.1.1,c.2.1.6 130890,130891 2izzA 322 0.02322 2graA 277 0.02477 2rcyA 262 0.03130 2pgd 482 0.03204 1nytA 271 0.04097 c.2.1.7,c.58.1.5 86417,86418 1pgjA 478 0.04320 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 0.04351 2f1kA 279 0.04767 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 0.05413 a.100.1.12,c.2.1.6 134646,134647 2eggA 297 0.06024 1gpjA 404 0.06427 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2d5cA 263 0.07581 2nloA 302 0.08338 2p4qA 497 0.09729 1npdA 288 0.09828 c.2.1.7,c.58.1.5 80681,80682 2pgdA 482 0.1110 a.100.1.1,c.2.1.6 18778,30190 1bg6A 359 0.1340 a.100.1.5,c.2.1.6 18810,30214 1p77A 272 0.1512 c.2.1.7,c.58.1.5 94214,94215 2hk9A 275 0.1623 1np3A 338 0.2013 a.100.1.2,c.2.1.6 85946,85947 1npyA 271 0.2172 c.2.1.7,c.58.1.5 85995,85996 1vi2A 300 0.2330 c.2.1.7,c.58.1.5 100726,100727 1nvtA 287 0.3484 c.2.1.7,c.58.1.5 86270,86271 1txgA 335 0.3535 a.100.1.6,c.2.1.6 112775,112776 2o7sA 523 0.3595 1bg6 359 0.4045 2pv7A 298 0.4218 2b0jA 358 0.4219 a.100.1.11,c.2.1.6 127639,127640 1evyA 366 0.4832 a.100.1.6,c.2.1.6 18811,30215 1x0vA 354 0.6665 1f0yA 302 0.7630 a.100.1.3,c.2.1.6 18793,30197 2dpoA 319 0.8895 1zcjA 463 1.034 2p2sA 336 1.039 2hdhA 293 1.049 a.100.1.3,c.2.1.6 18795,30199 1jayA 212 1.053 c.2.1.6 66478 2gptA 523 1.163 1i36A 264 1.216 a.100.1.8,c.2.1.6 71108,71109 2i76A 276 1.281 1zh8A 340 1.283 c.2.1.3,d.81.1.5 125077,125078 2q4eA 362 1.337 1zejA 293 1.338 3ceaA 346 1.451 1gdhA 320 2.043 c.2.1.4,c.23.12.1 30095,31355 2o4uX 334 2.184 1ff9A 450 2.231 c.2.1.3,d.81.1.2 30039,39954 2glxA 332 2.233 1omoA 322 2.378 c.2.1.13 104017 1z82A 335 2.611 1dxy 333 2.629 1j4aA 333 2.645 c.2.1.4,c.23.12.1 71502,71503 2nadA 393 2.672 c.2.1.4,c.23.12.1 30090,31350 2ho3A 325 2.681 2dbqA 334 2.813 1sc6A 404 2.842 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3c1aA 315 2.882 1h6dA 433 2.908 c.2.1.3,d.81.1.5 65656,65657 2nacA 393 2.970 c.2.1.4,c.23.12.1 30088,31348 1luaA 287 3.032 c.2.1.7,c.58.1.4 78216,78217 1xdwA 331 3.080 1tltA 319 3.244 c.2.1.3,d.81.1.5 107135,107136 2ew2A 316 3.312 1gcuA 295 3.327 c.2.1.3,d.81.1.4 30063,39978 1xeaA 323 3.351 c.2.1.3,d.81.1.5 109572,109573 1vllA 334 3.358 c.2.1.13 108834 2vhxA 377 3.581 2nvwA 479 3.601 c.2.1.3,d.81.1.5 138665,138666 2j6iA 364 3.652 1pjcA 361 3.706 c.2.1.4,c.23.12.2 30101,31361 1mx3A 347 4.050 c.2.1.4,c.23.12.1 79638,79639 1ygyA 529 4.129 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1x7dA 350 4.195 c.2.1.13 114927 1lssA 140 4.241 c.2.1.9 74246 3c85A 183 4.357 1dljA 402 4.391 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1qp8A 303 4.453 c.2.1.4,c.23.12.1 30092,31352 2g1uA 155 4.455 1lsuA 147 4.628 c.2.1.9 74250 1dliA 402 4.696 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1lc0A 294 4.781 c.2.1.3,d.81.1.4 73823,73824 1ks9A 291 4.815 a.100.1.7,c.2.1.6 68857,68858 1li4A 432 4.945 c.2.1.4,c.23.12.3 84616,84617 2ixaA 444 4.999 2g76A 335 5.088 1dxyA 333 5.174 c.2.1.4,c.23.12.1 30094,31354 1wwkA 307 5.311 2o4cA 380 5.446 1id1A 153 5.503 c.2.1.9 62286 2d0iA 333 5.955 2fssA 365 6.254 1l7dA 384 6.302 c.2.1.4,c.23.12.2 77774,77775 1yrlA 491 6.635 1mv8A 436 6.638 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2pi1A 334 6.817 1psdA 409 7.237 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2dldA 337 7.292 c.2.1.4,c.23.12.1 30099,31359 2o3jA 481 7.412 1sayA 361 7.491 c.2.1.4,c.23.12.2 30102,31362 1ldg 316 7.680 6ldhA 329 7.710 c.2.1.5,d.162.1.1 30161,42128 1ceqA 316 7.777 c.2.1.5,d.162.1.1 30163,42130 2vojA 371 7.970 3bioA 304 8.836 2hmvA 144 9.775 c.2.1.9 136615 2gcgA 330 10.26 1a5zA 319 10.78 c.2.1.5,d.162.1.1 30181,42148 1h2bA 359 11.44 b.35.1.2,c.2.1.1 90543,90544 2axqA 467 11.67 1d4fA 431 11.84 c.2.1.4,c.23.12.3 30110,31370 2eklA 313 11.93 1xwfA 431 12.20 c.2.1.4,c.23.12.3 122392,122393 2cukA 311 12.97 1rydA 387 13.12 c.2.1.3,d.81.1.5 118801,118802 1guzA 310 14.25 c.2.1.5,d.162.1.1 65586,65587 1t2dA 322 14.36 c.2.1.5,d.162.1.1 99084,99085 1hdcA 253 14.52 c.2.1.2 29862 1f06A 320 14.61 c.2.1.3,d.81.1.3 59556,59557 1zk4A 251 14.84 c.2.1.2 125176 1kevA 351 14.93 b.35.1.2,c.2.1.1 24749,29765 1pl8A 356 15.14 b.35.1.2,c.2.1.1 94878,94879 1hyhA 309 16.19 c.2.1.5,d.162.1.1 30150,42117 1c1dA 355 16.58 c.2.1.7,c.58.1.1 30270,33918 1a71A 374 17.15 b.35.1.2,c.2.1.1 24673,29689 1uxjA 309 18.74 c.2.1.5,d.162.1.1 108112,108113 1axgA 374 19.28 b.35.1.2,c.2.1.1 24691,29707 1h7xA 1025 19.78 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1ez4A 318 19.79 c.2.1.5,d.162.1.1 64917,64918 1axeA 374 19.80 b.35.1.2,c.2.1.1 24681,29697 1yb1A 272 20.32 c.2.1.2 116599 2ouiA 360 20.79 2i6tA 303 20.82 2v7pA 310 20.90 1f8fA 371 20.99 b.35.1.2,c.2.1.1 83246,83247 2qytA 317 21.21 2aefA 234 21.28 1vj0A 380 21.95 b.35.1.2,c.2.1.1 100786,100787 2d8aA 348 22.56 1bw9A 356 22.71 c.2.1.7,c.58.1.1 30274,33922 1bdb 277 23.37 1y9aA 360 24.38 1yxmA 303 24.98 c.2.1.2 124192 1pzgA 331 25.50 c.2.1.5,d.162.1.1 95425,95426 2gdzA 267 25.75 c.2.1.2 135043 1xhlA 297 26.00 c.2.1.2 109591 1ldnA 316 26.08 c.2.1.5,d.162.1.1 30166,42133 2hsdA 253 26.14 c.2.1.2 29866 2zbwA 335 26.34 2jhfA 374 26.79 b.35.1.2,c.2.1.1 138314,138315 1iy8A 267 27.25 c.2.1.2 83774 1jqbA 351 27.66 b.35.1.2,c.2.1.1 77151,77152 1n8kA 374 27.97 b.35.1.2,c.2.1.1 80298,80299 2bkaA 242 28.09 c.2.1.2 128666 1xseA 295 28.16 c.2.1.2 115925 2cf5A 357 30.00 1b3rA 431 30.00 c.2.1.4,c.23.12.3 30106,31366 1ykfA 352 30.18 b.35.1.2,c.2.1.1 24757,29773 3csuA 310 30.34 c.78.1.1,c.78.1.1 35094,35095 1ur5A 309 31.29 c.2.1.5,d.162.1.1 99807,99808 1xu9A 286 31.62 c.2.1.2 116052 2ohxA 374 31.94 b.35.1.2,c.2.1.1 24669,29685 1lluA 342 32.14 b.35.1.2,c.2.1.1 91064,91065 1zemA 262 32.86 c.2.1.2 124984 2h6eA 344 33.04 2a4kA 263 33.32 c.2.1.2 126156 1k2wA 256 34.42 c.2.1.2 90927 2b5wA 357 34.71 2g17A 337 35.53 c.2.1.3,d.81.1.1 134512,134513 1qmgA 524 35.93 a.100.1.2,c.2.1.6 18785,30182 2d59A 144 36.31 c.2.1.8 131266 1lnqA 336 36.33 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1cydA 244 36.49 c.2.1.2 29825 1vqwA 457 36.87 c.3.1.5,c.3.1.5 114028,114029 1hwyA 501 37.21 c.2.1.7,c.58.1.1 30262,33910 2hoqA 241 37.25 1b3bA 415 37.42 c.2.1.7,c.58.1.1 30244,33892 9ldtA 332 37.83 c.2.1.5,d.162.1.1 30154,42121 1ee2A 373 38.11 b.35.1.2,c.2.1.1 24663,29679 1u3wA 374 38.52 b.35.1.2,c.2.1.1 113013,113014 3bkwA 243 38.97 1pjqA 457 39.88 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1othA 321 40.19 c.78.1.1,c.78.1.1 35260,35261 1zmdA 474 40.32 1zk7A 467 40.35 3ladA 476 40.79 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1vl6A 388 41.60 c.2.1.7,c.58.1.3 108724,108725 1y5mA 276 42.11 c.2.1.2 122645 1yqdA 366 42.88 1xgkA 352 43.32 c.2.1.2 115286 1p0fA 373 43.59 b.35.1.2,c.2.1.1 87642,87643 1gteA 1025 44.31 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1kolA 398 44.53 b.35.1.2,c.2.1.1 77474,77475 2ae2A 260 45.54 c.2.1.2 29945 1h5qA 265 45.59 c.2.1.2 60643 2ew8A 249 45.60 c.2.1.2 132447 1w6uA 302 45.65 c.2.1.2 114288 2cdcA 366 45.90 1lldA 319 47.07 c.2.1.5,d.162.1.1 30177,42144 1gcoA 261 47.74 c.2.1.2 29884 2cfcA 250 48.40 1b0aA 288 49.24 c.2.1.7,c.58.1.2 30286,33934 1z7bA 358 49.47 c.2.1.2 124599 1kyqA 274 49.76 c.2.1.11,e.37.1.1 73281,73282 1h7wA 1025 50.73 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1eudA 311 50.73 c.2.1.8,c.23.4.1 30312,31140 2gasA 307 51.29 3grs 478 51.96 1d7yA 408 52.66 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1y81A 138 53.21 c.2.1.8 122731 2ewdA 317 53.79 2c2xA 281 53.92 1nvmB 312 54.02 c.2.1.3,d.81.1.1 86251,86252 1a4iA 301 54.02 c.2.1.7,c.58.1.2 30278,33926 1sbyA 254 54.03 c.2.1.2 118930 1jw9B 249 55.09 c.111.1.1 67377 1yb5A 351 56.35 b.35.1.2,c.2.1.1 116601,116602 1gesA 450 56.86 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1nhsA 447 57.30 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2jahA 247 57.33 1xg5A 279 57.53 c.2.1.2 115277 1b8pA 329 57.83 c.2.1.5,d.162.1.1 30147,42114 1drw 273 58.50 1q7bA 244 60.11 c.2.1.2 96026 1edoA 244 61.49 c.2.1.2 29896 2nwqA 272 63.10 1he2A 206 63.92 c.2.1.2 60966 1lvl 458 64.17 2pd6A 264 64.40 1yqzA 438 64.51 1mjfA 281 64.99 c.66.1.17 79198 1k6xA 352 66.18 c.2.1.2 68238 1spxA 278 66.35 c.2.1.2 98958 1e3jA 352 66.44 b.35.1.2,c.2.1.1 24765,29781 2dt5A 211 69.26 a.4.5.38,c.2.1.12 131708,131709 2ph3A 245 71.63 1hxhA 253 72.93 c.2.1.2 76725 1ekxA 311 73.74 c.78.1.1,c.78.1.1 35088,35089 2h7mA 269 75.08 c.2.1.2 136219 1hwxA 501 76.19 c.2.1.7,c.58.1.1 30250,33898 2ag5A 246 77.14 c.2.1.2 126719 1ml4A 308 77.93 c.78.1.1,c.78.1.1 79255,79256 1j6uA 469 79.05 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1b26A 416 79.10 c.2.1.7,c.58.1.1 30232,33880 1ykjA 394 79.33 1yo6A 250 79.42 c.2.1.2 123769 1vm6A 228 79.53 d.81.1.3,c.2.1.3 108877,118631 1iukA 140 79.62 c.2.1.8 83712 1e6wA 260 79.97 c.2.1.2 59326 1pwxA 254 80.55 c.2.1.2 95262 1y1pA 342 80.97 c.2.1.2 122550 1gtmA 419 81.92 c.2.1.7,c.58.1.1 30223,33871 1nhp 447 82.12 1ja9A 274 82.24 c.2.1.2 62817 2b30A 301 82.32 c.108.1.10 127759 1zud1 251 82.44 1up6A 416 82.53 c.2.1.5,d.162.1.2 107976,107977 1ae1A 273 83.37 c.2.1.2 29943 2gqwA 408 83.44 1nffA 260 84.21 c.2.1.2 80457 1ortA 335 84.72 c.78.1.1,c.78.1.1 35204,35205 1hdoA 206 86.01 c.2.1.2 60965 2dc1A 236 86.71 1wmaA 276 87.13 c.2.1.2 121042 1fmcA 255 88.12 c.2.1.2 29856 2q49A 359 89.13 c.2.1.3,d.81.1.1 139831,139832 2bmaA 470 89.21