# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 7.28e-05 1vpdA 299 0.000114 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000144 a.100.1.10,c.2.1.6 126775,126776 2h78A 302 0.000158 2graA 277 0.000169 1yb4A 295 0.000205 2cvzA 289 0.000330 a.100.1.1,c.2.1.6 130890,130891 2pgd 482 0.000367 2izzA 322 0.000442 2rcyA 262 0.000456 1pgjA 478 0.000538 a.100.1.1,c.2.1.6 18783,30195 1nytA 271 0.000573 c.2.1.7,c.58.1.5 86417,86418 2f1kA 279 0.000699 a.100.1.12,c.2.1.6 132772,132773 2eggA 297 0.001437 1bg6A 359 0.001483 a.100.1.5,c.2.1.6 18810,30214 1gpjA 404 0.001570 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3c24A 286 0.001671 2g5cA 281 0.002068 a.100.1.12,c.2.1.6 134646,134647 2pgdA 482 0.002134 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 0.002279 1p77A 272 0.002379 c.2.1.7,c.58.1.5 94214,94215 2nloA 302 0.002396 2d5cA 263 0.003158 2hk9A 275 0.005519 1bg6 359 0.006214 1npdA 288 0.007073 c.2.1.7,c.58.1.5 80681,80682 1npyA 271 0.009021 c.2.1.7,c.58.1.5 85995,85996 1np3A 338 0.009517 a.100.1.2,c.2.1.6 85946,85947 1nvtA 287 0.01167 c.2.1.7,c.58.1.5 86270,86271 1vi2A 300 0.02509 c.2.1.7,c.58.1.5 100726,100727 1txgA 335 0.03328 a.100.1.6,c.2.1.6 112775,112776 2o7sA 523 0.03642 1i36A 264 0.04016 a.100.1.8,c.2.1.6 71108,71109 2pv7A 298 0.04099 1evyA 366 0.04248 a.100.1.6,c.2.1.6 18811,30215 2b0jA 358 0.05165 a.100.1.11,c.2.1.6 127639,127640 1zh8A 340 0.06299 c.2.1.3,d.81.1.5 125077,125078 1x0vA 354 0.06509 2ho3A 325 0.07044 2o4uX 334 0.07548 2glxA 332 0.07711 2q4eA 362 0.07803 1ofgA 381 0.08692 c.2.1.3,d.81.1.5 30064,39979 1jayA 212 0.09266 c.2.1.6 66478 3ceaA 346 0.09576 1rydA 387 0.1087 c.2.1.3,d.81.1.5 118801,118802 1h6dA 433 0.1131 c.2.1.3,d.81.1.5 65656,65657 2p2sA 336 0.1150 2i76A 276 0.1372 2gptA 523 0.1404 3c1aA 315 0.1465 1tltA 319 0.1534 c.2.1.3,d.81.1.5 107135,107136 1z82A 335 0.1608 1ff9A 450 0.1690 c.2.1.3,d.81.1.2 30039,39954 2hdhA 293 0.2006 a.100.1.3,c.2.1.6 18795,30199 2axqA 467 0.2020 2dpoA 319 0.2021 2ixaA 444 0.2305 1gcuA 295 0.2521 c.2.1.3,d.81.1.4 30063,39978 2nvwA 479 0.2867 c.2.1.3,d.81.1.5 138665,138666 1dxy 333 0.3373 1f0yA 302 0.4243 a.100.1.3,c.2.1.6 18793,30197 1omoA 322 0.4641 c.2.1.13 104017 1d4fA 431 0.4854 c.2.1.4,c.23.12.3 30110,31370 1gdhA 320 0.5685 c.2.1.4,c.23.12.1 30095,31355 1ks9A 291 0.5915 a.100.1.7,c.2.1.6 68857,68858 1zejA 293 0.6037 1vllA 334 0.6198 c.2.1.13 108834 1lc0A 294 0.6259 c.2.1.3,d.81.1.4 73823,73824 1dxyA 333 0.6420 c.2.1.4,c.23.12.1 30094,31354 1luaA 287 0.6824 c.2.1.7,c.58.1.4 78216,78217 2j6iA 364 0.6865 1x7dA 350 0.7229 c.2.1.13 114927 2nacA 393 0.7328 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 0.7461 2gcgA 330 0.7880 2g76A 335 0.7925 1b3rA 431 0.8138 c.2.1.4,c.23.12.3 30106,31366 1zcjA 463 0.8610 1mx3A 347 0.9414 c.2.1.4,c.23.12.1 79638,79639 1xdwA 331 0.9562 2nadA 393 1.006 c.2.1.4,c.23.12.1 30090,31350 2fssA 365 1.048 1li4A 432 1.068 c.2.1.4,c.23.12.3 84616,84617 1j4aA 333 1.094 c.2.1.4,c.23.12.1 71502,71503 2g1uA 155 1.140 1mv8A 436 1.256 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2ew2A 316 1.268 2eklA 313 1.335 2o4cA 380 1.586 1ygyA 529 1.626 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1dljA 402 1.875 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1xeaA 323 1.913 c.2.1.3,d.81.1.5 109572,109573 2dbqA 334 1.931 1qp8A 303 1.969 c.2.1.4,c.23.12.1 30092,31352 1psdA 409 2.074 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2dldA 337 2.160 c.2.1.4,c.23.12.1 30099,31359 3c85A 183 2.162 1pjcA 361 2.280 c.2.1.4,c.23.12.2 30101,31361 1dliA 402 2.629 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2pi1A 334 2.636 1yrlA 491 2.672 1a7aA 432 2.914 c.2.1.4,c.23.12.3 30104,31364 2d0iA 333 3.104 2cukA 311 3.122 1sc6A 404 3.178 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1l7dA 384 3.248 c.2.1.4,c.23.12.2 77774,77775 2o3jA 481 3.935 1ldg 316 4.165 1ceqA 316 4.525 c.2.1.5,d.162.1.1 30163,42130 2vojA 371 4.607 2vhxA 377 4.783 2hsdA 253 4.986 c.2.1.2 29866 1hdcA 253 5.065 c.2.1.2 29862 1v8bA 479 5.251 c.2.1.4,c.23.12.3 113564,113565 1uufA 369 6.582 b.35.1.2,c.2.1.1 100006,100007 1h2bA 359 6.796 b.35.1.2,c.2.1.1 90543,90544 1xwfA 431 6.935 c.2.1.4,c.23.12.3 122392,122393 2bkaA 242 7.842 c.2.1.2 128666 1bw9A 356 8.107 c.2.1.7,c.58.1.1 30274,33922 1lssA 140 8.479 c.2.1.9 74246 2cdcA 366 8.695 1e3jA 352 9.045 b.35.1.2,c.2.1.1 24765,29781 1hyhA 309 9.067 c.2.1.5,d.162.1.1 30150,42117 1c1dA 355 9.269 c.2.1.7,c.58.1.1 30270,33918 2b5wA 357 10.25 1guzA 310 10.47 c.2.1.5,d.162.1.1 65586,65587 1vjtA 483 10.74 c.2.1.5,d.162.1.2 100833,100834 3bioA 304 10.78 1yxmA 303 11.09 c.2.1.2 124192 1vl8A 267 11.12 c.2.1.2 108733 1xhlA 297 11.34 c.2.1.2 109591 2i6tA 303 12.12 1f8fA 371 12.48 b.35.1.2,c.2.1.1 83246,83247 1t2dA 322 12.54 c.2.1.5,d.162.1.1 99084,99085 1a5zA 319 12.72 c.2.1.5,d.162.1.1 30181,42148 6ldhA 329 12.74 c.2.1.5,d.162.1.1 30161,42128 1qmgA 524 12.90 a.100.1.2,c.2.1.6 18785,30182 1edoA 244 13.03 c.2.1.2 29896 1kevA 351 13.07 b.35.1.2,c.2.1.1 24749,29765 1xseA 295 13.09 c.2.1.2 115925 1a71A 374 13.10 b.35.1.2,c.2.1.1 24673,29689 2gdzA 267 13.35 c.2.1.2 135043 1yb1A 272 13.89 c.2.1.2 116599 1axgA 374 13.94 b.35.1.2,c.2.1.1 24691,29707 1lehA 364 14.24 c.2.1.7,c.58.1.1 30268,33916 1gegA 256 14.33 c.2.1.2 29888 1ydeA 270 14.44 c.2.1.2 122980 2pnfA 248 14.70 2pd6A 264 14.72 1xg5A 279 15.02 c.2.1.2 115277 1ez4A 318 15.03 c.2.1.5,d.162.1.1 64917,64918 1vqwA 457 15.25 c.3.1.5,c.3.1.5 114028,114029 2cf5A 357 15.55 1q7bA 244 15.83 c.2.1.2 96026 1drw 273 15.87 1u3wA 374 16.12 b.35.1.2,c.2.1.1 113013,113014 2ouiA 360 16.36 1pzgA 331 16.39 c.2.1.5,d.162.1.1 95425,95426 1axeA 374 16.41 b.35.1.2,c.2.1.1 24681,29697 1w6uA 302 16.41 c.2.1.2 114288 1f06A 320 16.62 c.2.1.3,d.81.1.3 59556,59557 2qytA 317 16.63 1xu9A 286 16.67 c.2.1.2 116052 2a4kA 263 16.74 c.2.1.2 126156 1y5mA 276 16.86 c.2.1.2 122645 2bgkA 278 17.04 c.2.1.2 128480 1nffA 260 17.40 c.2.1.2 80457 1k2wA 256 17.54 c.2.1.2 90927 1bdb 277 17.76 2d8aA 348 17.77 1ja9A 274 17.77 c.2.1.2 62817 2v7pA 310 18.09 1xkqA 280 18.65 c.2.1.2 115417 1zemA 262 18.72 c.2.1.2 124984 1hxhA 253 18.96 c.2.1.2 76725 2ag5A 246 18.96 c.2.1.2 126719 1pjqA 457 19.18 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ee2A 373 19.27 b.35.1.2,c.2.1.1 24663,29679 1x7gA 261 19.33 c.2.1.2 114929 1iy8A 267 19.69 c.2.1.2 83774 1e6wA 260 19.99 c.2.1.2 59326 1jqbA 351 20.43 b.35.1.2,c.2.1.1 77151,77152 1uxjA 309 21.01 c.2.1.5,d.162.1.1 108112,108113 1ykfA 352 21.55 b.35.1.2,c.2.1.1 24757,29773 1zk4A 251 22.98 c.2.1.2 125176 2yyyA 343 24.72 1p0fA 373 24.84 b.35.1.2,c.2.1.1 87642,87643 2h6eA 344 24.84 2r6jA 318 24.93 2czcA 334 25.22 d.81.1.1 131044 2c07A 285 25.27 c.2.1.2 129577 1y9aA 360 26.58 2aefA 234 26.58 1h5qA 265 26.84 c.2.1.2 60643 1lluA 342 27.03 b.35.1.2,c.2.1.1 91064,91065 1cf2O 337 27.62 c.2.1.3,d.81.1.1 29994,39909 2ae2A 260 27.81 c.2.1.2 29945 1lsuA 147 28.26 c.2.1.9 74250 2ew8A 249 28.48 c.2.1.2 132447 1n8kA 374 28.74 b.35.1.2,c.2.1.1 80298,80299 2cfcA 250 29.05 1pl8A 356 29.09 b.35.1.2,c.2.1.1 94878,94879 2hmvA 144 29.86 c.2.1.9 136615 1fl2A 310 29.89 c.3.1.5,c.3.1.5 59869,59870 1b8pA 329 29.95 c.2.1.5,d.162.1.1 30147,42114 2ph3A 245 29.95 1pwxA 254 29.96 c.2.1.2 95262 1vknA 351 30.38 c.2.1.3,d.81.1.1 108676,108677 1he2A 206 30.50 c.2.1.2 60966 1e3sA 261 30.80 c.2.1.2 59201 2ohxA 374 30.97 b.35.1.2,c.2.1.1 24669,29685 2ewdA 317 31.56 1cydA 244 31.75 c.2.1.2 29825 1x1tA 260 31.76 c.2.1.2 121597 1othA 321 31.92 c.78.1.1,c.78.1.1 35260,35261 1lnqA 336 32.16 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 2jfgA 445 32.62 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2gasA 307 33.03 1h7xA 1025 33.38 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2o23A 265 33.56 c.2.1.2 138884 2jhfA 374 34.19 b.35.1.2,c.2.1.1 138314,138315 2q49A 359 34.29 c.2.1.3,d.81.1.1 139831,139832 1n5dA 288 35.17 c.2.1.2 80030 1yqdA 366 35.79 2p91A 285 36.39 1vl6A 388 36.42 c.2.1.7,c.58.1.3 108724,108725 1u8xX 472 37.73 c.2.1.5,d.162.1.2 107741,107742 2hq1A 247 38.47 2ph5A 480 38.59 1id1A 153 38.65 c.2.1.9 62286 1hdoA 206 39.33 c.2.1.2 60965 1ldnA 316 39.33 c.2.1.5,d.162.1.1 30166,42133 2g17A 337 39.98 c.2.1.3,d.81.1.1 134512,134513 2jahA 247 40.00 1kolA 398 40.21 b.35.1.2,c.2.1.1 77474,77475 1gcoA 261 40.71 c.2.1.2 29884 1vj0A 380 40.74 b.35.1.2,c.2.1.1 100786,100787 1d7oA 297 41.03 c.2.1.2 29907 2yquA 455 41.29 1g0oA 283 42.21 c.2.1.2 60181 1wmaA 276 42.24 c.2.1.2 121042 1ybvA 283 42.92 c.2.1.2 29948 2d59A 144 42.99 c.2.1.8 131266 1b3bA 415 43.08 c.2.1.7,c.58.1.1 30244,33892 1pedA 351 44.30 b.35.1.2,c.2.1.1 24753,29769 1uh5A 329 44.86 c.2.1.2 107840 1ebdA 455 45.21 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1drwA 273 45.57 c.2.1.3,d.81.1.3 30057,39972 2zbwA 335 46.48 1fmcA 255 46.68 c.2.1.2 29856 1sbyA 254 47.18 c.2.1.2 118930 1gteA 1025 47.41 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1gtmA 419 50.04 c.2.1.7,c.58.1.1 30223,33871 2gn4A 344 50.44 1h7wA 1025 50.50 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1lldA 319 51.13 c.2.1.5,d.162.1.1 30177,42144 1xgkA 352 51.59 c.2.1.2 115286 1xcbA 211 51.62 a.4.5.38,c.2.1.12 109552,109553 1y1pA 342 52.27 c.2.1.2 122550 1hwxA 501 53.35 c.2.1.7,c.58.1.1 30250,33898 2nwqA 272 54.42 2c2xA 281 55.51 1zmdA 474 55.74 1spxA 278 55.81 c.2.1.2 98958 1kyqA 274 57.18 c.2.1.11,e.37.1.1 73281,73282 2q1sA 377 57.32 2ekpA 239 57.38 1hwyA 501 57.40 c.2.1.7,c.58.1.1 30262,33910 2d1yA 256 57.82 c.2.1.2 131151 1ae1A 273 59.65 c.2.1.2 29943 2bd0A 244 61.50 c.2.1.2 128321 1nvmB 312 61.77 c.2.1.3,d.81.1.1 86251,86252 1j5pA 253 61.95 d.81.1.3,c.2.1.3 71577,83092 1b26A 416 62.18 c.2.1.7,c.58.1.1 30232,33880 2gv8A 447 62.85 c.3.1.5,c.3.1.5 135759,135760 1cjcA 460 63.52 c.3.1.1,c.4.1.1 30319,30604 1zbqA 327 63.91 c.2.1.2 124862 2h7mA 269 64.58 c.2.1.2 136219 2gz1A 366 65.40 c.2.1.3,d.81.1.1 135887,135888 1enp 312 66.11 1k6xA 352 66.37 c.2.1.2 68238 1qydA 313 68.89 c.2.1.2 96583 1ek6A 348 70.31 c.2.1.2 29800 2dc1A 236 71.66 1p3dA 475 71.81 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1qh8A 478 71.89 c.92.2.3 35633 1x1eA 239 72.56 1z7bA 358 73.79 c.2.1.2 124599 1o5iA 249 75.23 c.2.1.2 92499 1fds 327 75.24 1ne2A 200 76.17 c.66.1.32 85586 1b0aA 288 78.69 c.2.1.7,c.58.1.2 30286,33934 1m1nA 491 78.96 c.92.2.3 78417 1zk7A 467 79.02 2q46A 253 80.29 c.2.1.2 139825 1nhp 447 80.98 2bmaA 470 81.37 1zmtA 254 83.94 c.2.1.2 125363 1reoA 486 84.03 c.3.1.2,d.16.1.5 97325,97326 1yovA 537 84.57 c.111.1.2 123785 2i6uA 307 84.69 2r00A 336 85.42 1rlmA 271 86.47 c.108.1.10 111860 1a4iA 301 86.48 c.2.1.7,c.58.1.2 30278,33926 2fr1A 486 89.01 c.2.1.2,c.2.1.2 133961,133962 1dhr 241 89.83