Best Alignments for T0393

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2izzA	1.6346e-08	2izzA/T0393-2izzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1np3A	2.5297e-08	1np3A/T0393-1np3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.2 c.2.1.6
1yb4A	3.1773e-08	1yb4A/T0393-1yb4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pgdA	3.2909e-08	2pgdA/T0393-2pgdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2p4qA	3.3951e-08	2p4qA/T0393-2p4qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vpdA	5.8367e-08	1vpdA/T0393-1vpdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2graA	5.9405e-08	2graA/T0393-2graA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yqgA	7.9150e-08	1yqgA/T0393-1yqgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1txgA	9.7044e-08	1txgA/T0393-1txgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.6 c.2.1.6
3c24A	1.1610e-07	3c24A/T0393-3c24A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bg6A	1.3348e-07	1bg6A/T0393-1bg6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.5 c.2.1.6
2qytA	1.3496e-07	2qytA/T0393-2qytA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ahrA	1.5742e-07	2ahrA/T0393-2ahrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.10 c.2.1.6
1yrlA	2.7535e-07	1yrlA/T0393-1yrlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h78A	3.0573e-07	2h78A/T0393-2h78A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bg6	3.5940e-07	1bg6/T0393-1bg6-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rcyA	4.3227e-07	2rcyA/T0393-2rcyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f1kA	4.9285e-07	2f1kA/T0393-2f1kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
2cvzA	5.4287e-07	2cvzA/T0393-2cvzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
1jayA	5.5625e-07	1jayA/T0393-1jayA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.6

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001