# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.003687 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.004177 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.004538 1yqgA 263 0.004834 2h78A 302 0.005865 2p4qA 497 0.006552 1np3A 338 0.007007 a.100.1.2,c.2.1.6 85946,85947 2pgdA 482 0.007277 a.100.1.1,c.2.1.6 18778,30190 2rcyA 262 0.008009 1yb4A 295 0.008047 2pgd 482 0.008207 2ew2A 316 0.008997 2cvzA 289 0.01003 a.100.1.1,c.2.1.6 130890,130891 2dpoA 319 0.01067 3c24A 286 0.01116 1bg6A 359 0.01129 a.100.1.5,c.2.1.6 18810,30214 2f1kA 279 0.01506 a.100.1.12,c.2.1.6 132772,132773 1ks9A 291 0.01562 a.100.1.7,c.2.1.6 68857,68858 2g5cA 281 0.01648 a.100.1.12,c.2.1.6 134646,134647 1yrlA 491 0.01952 1zcjA 463 0.02093 2graA 277 0.02236 1evyA 366 0.02612 a.100.1.6,c.2.1.6 18811,30215 2pv7A 298 0.02928 1f0yA 302 0.03065 a.100.1.3,c.2.1.6 18793,30197 2qytA 317 0.03228 1qmgA 524 0.03384 a.100.1.2,c.2.1.6 18785,30182 1x0vA 354 0.03778 1bg6 359 0.04581 1txgA 335 0.05523 a.100.1.6,c.2.1.6 112775,112776 1zejA 293 0.05743 1i36A 264 0.06074 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 0.07118 2o3jA 481 0.08746 2i76A 276 0.1070 1mv8A 436 0.1080 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1jayA 212 0.1220 c.2.1.6 66478 1qv9A 283 0.1372 c.127.1.1 96356 1dliA 402 0.2920 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.3068 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2axqA 467 0.5385 1gdhA 320 0.6358 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.6569 c.2.1.4,c.23.12.1 30088,31348 1ygyA 529 0.6897 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2fssA 365 0.8163 1j4aA 333 0.8424 c.2.1.4,c.23.12.1 71502,71503 2dbqA 334 0.8542 1wwkA 307 0.9535 1mx3A 347 0.9546 c.2.1.4,c.23.12.1 79638,79639 1li4A 432 0.9607 c.2.1.4,c.23.12.3 84616,84617 2pi1A 334 1.048 2j6iA 364 1.080 1xdwA 331 1.095 1dxy 333 1.113 1gpjA 404 1.177 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2o4cA 380 1.231 2gcgA 330 1.325 1x7dA 350 1.464 c.2.1.13 114927 1dxyA 333 1.598 c.2.1.4,c.23.12.1 30094,31354 1lssA 140 1.697 c.2.1.9 74246 1omoA 322 1.724 c.2.1.13 104017 1v8bA 479 1.918 c.2.1.4,c.23.12.3 113564,113565 2cukA 311 1.949 2g76A 335 1.970 1sc6A 404 1.994 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1pjcA 361 2.006 c.2.1.4,c.23.12.2 30101,31361 2b0jA 358 2.021 a.100.1.11,c.2.1.6 127639,127640 1guzA 310 2.056 c.2.1.5,d.162.1.1 65586,65587 1lldA 319 2.154 c.2.1.5,d.162.1.1 30177,42144 2ewdA 317 2.181 2d0iA 333 2.225 1pzgA 331 2.228 c.2.1.5,d.162.1.1 95425,95426 1qp8A 303 2.245 c.2.1.4,c.23.12.1 30092,31352 1hyhA 309 2.503 c.2.1.5,d.162.1.1 30150,42117 1t2dA 322 2.563 c.2.1.5,d.162.1.1 99084,99085 2vhxA 377 2.607 1ff9A 450 2.664 c.2.1.3,d.81.1.2 30039,39954 2v7pA 310 2.759 2eklA 313 3.051 1uxjA 309 3.055 c.2.1.5,d.162.1.1 108112,108113 2vojA 371 3.208 2nvwA 479 3.269 c.2.1.3,d.81.1.5 138665,138666 2ho3A 325 3.284 1f06A 320 3.377 c.2.1.3,d.81.1.3 59556,59557 3ceaA 346 3.656 1a5zA 319 3.854 c.2.1.5,d.162.1.1 30181,42148 1p77A 272 3.882 c.2.1.7,c.58.1.5 94214,94215 2eggA 297 3.916 2o4uX 334 4.548 1u8xX 472 4.557 c.2.1.5,d.162.1.2 107741,107742 3bioA 304 4.896 6ldhA 329 4.952 c.2.1.5,d.162.1.1 30161,42128 1ez4A 318 5.068 c.2.1.5,d.162.1.1 64917,64918 2i6tA 303 5.140 2p2sA 336 5.215 1lsuA 147 5.251 c.2.1.9 74250 2dc1A 236 5.290 2q4eA 362 5.353 1h6dA 433 5.510 c.2.1.3,d.81.1.5 65656,65657 1l7dA 384 5.550 c.2.1.4,c.23.12.2 77774,77775 2hk9A 275 5.618 1tltA 319 5.739 c.2.1.3,d.81.1.5 107135,107136 1xeaA 323 6.061 c.2.1.3,d.81.1.5 109572,109573 1obbA 480 6.134 c.2.1.5,d.162.1.2 86760,86761 1lehA 364 6.242 c.2.1.7,c.58.1.1 30268,33916 2aefA 234 6.314 2nloA 302 6.518 1nytA 271 6.637 c.2.1.7,c.58.1.5 86417,86418 2d5cA 263 7.140 2ixaA 444 7.208 2hmvA 144 7.237 c.2.1.9 136615 2glxA 332 7.282 1x13A 401 7.510 3c1aA 315 7.515 1rydA 387 8.359 c.2.1.3,d.81.1.5 118801,118802 1nvmB 312 8.408 c.2.1.3,d.81.1.1 86251,86252 2r6jA 318 8.727 2g1uA 155 8.826 1vjtA 483 9.065 c.2.1.5,d.162.1.2 100833,100834 1id1A 153 9.474 c.2.1.9 62286 2g17A 337 9.874 c.2.1.3,d.81.1.1 134512,134513 1npyA 271 10.19 c.2.1.7,c.58.1.5 85995,85996 1zh8A 340 10.73 c.2.1.3,d.81.1.5 125077,125078 2hjsA 340 11.30 c.2.1.3,d.81.1.1 136547,136548 2r00A 336 11.65 1s6yA 450 11.78 c.2.1.5,d.162.1.2 105314,105315 1up7A 417 12.22 c.2.1.5,d.162.1.2 113374,113375 1y1pA 342 12.28 c.2.1.2 122550 1luaA 287 12.97 c.2.1.7,c.58.1.4 78216,78217 1sb8A 352 13.07 c.2.1.2 105410 1drw 273 13.40 1hdoA 206 13.54 c.2.1.2 60965 1drwA 273 14.19 c.2.1.3,d.81.1.3 30057,39972 1nvtA 287 14.41 c.2.1.7,c.58.1.5 86270,86271 1vknA 351 15.20 c.2.1.3,d.81.1.1 108676,108677 1y81A 138 15.54 c.2.1.8 122731 1yqdA 366 15.62 1j5pA 253 16.77 d.81.1.3,c.2.1.3 71577,83092 2ejwA 332 16.97 1fl2A 310 17.00 c.3.1.5,c.3.1.5 59869,59870 2ph5A 480 17.36 3c85A 183 17.40 1xgkA 352 17.94 c.2.1.2 115286 2d59A 144 18.02 c.2.1.8 131266 2q1sA 377 18.17 2b69A 343 18.21 c.2.1.2 127974 1i2cA 404 18.49 c.2.1.2 83666 2pzmA 330 18.82 2nqtA 352 19.01 2gz1A 366 19.46 c.2.1.3,d.81.1.1 135887,135888 2o7sA 523 20.91 1iukA 140 20.93 c.2.1.8 83712 2gn4A 344 21.01 1oc2A 348 21.35 c.2.1.2 92765 1lluA 342 21.51 b.35.1.2,c.2.1.1 91064,91065 2cf5A 357 21.89 3cc8A 230 22.13 1uufA 369 22.39 b.35.1.2,c.2.1.1 100006,100007 2exxA 306 22.54 2fk8A 318 22.56 c.66.1.18 133648 2q49A 359 23.21 c.2.1.3,d.81.1.1 139831,139832 1lc0A 294 23.53 c.2.1.3,d.81.1.4 73823,73824 1z7bA 358 23.54 c.2.1.2 124599 1c1dA 355 25.55 c.2.1.7,c.58.1.1 30270,33918 2c29D 337 26.75 1ve3A 227 27.15 c.66.1.43 120010 2p5yA 311 27.23 1vi2A 300 28.52 c.2.1.7,c.58.1.5 100726,100727 1mldA 314 28.82 c.2.1.5,d.162.1.1 30122,42089 2cmd 312 29.45 1xu9A 286 30.56 c.2.1.2 116052 2zbwA 335 30.95 1wznA 252 30.97 c.66.1.43 121525 1l1eA 287 31.84 c.66.1.18 73454 2cmdA 312 32.39 c.2.1.5,d.162.1.1 30135,42102 2bkaA 242 33.08 c.2.1.2 128666 1kpgA 287 34.06 c.66.1.18 68735 1p91A 269 34.87 c.66.1.33 94378 1vl5A 260 35.05 c.66.1.41 108720 1wvgA 359 35.39 c.2.1.2 121339 1nhpA 447 35.78 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1o6zA 303 35.82 c.2.1.5,d.162.1.1 81107,81108 1xvaA 292 35.94 c.66.1.5 34183 1uirA 314 36.12 c.66.1.17 99429 2bllA 345 36.21 c.2.1.2 128733 2z1mA 345 36.98 2p4hX 322 37.09 1vj0A 380 37.11 b.35.1.2,c.2.1.1 100786,100787 1kyqA 274 37.64 c.2.1.11,e.37.1.1 73281,73282 1xxlA 239 38.10 c.66.1.41 116203 1nhsA 447 38.27 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2a35A 215 38.54 c.2.1.2 126072 1xg5A 279 38.66 c.2.1.2 115277 1ys4A 354 38.89 2ex4A 241 39.25 c.66.1.42 132516 1b7gO 340 40.09 c.2.1.3,d.81.1.1 29992,39907 3c8mA 331 40.49 2czcA 334 40.59 d.81.1.1 131044 1qamA 244 40.64 c.66.1.24 34220 1rkxA 357 41.14 c.2.1.2 97631 1yxmA 303 43.60 c.2.1.2 124192 1ri5A 298 44.29 c.66.1.34 97502 1yovA 537 44.49 c.111.1.2 123785 1xq6A 253 44.61 c.2.1.2 115829 1y8cA 246 44.78 c.66.1.43 116563 1pl8A 356 45.50 b.35.1.2,c.2.1.1 94878,94879 1r6dA 337 46.12 c.2.1.2 97148 2gasA 307 46.17 1yb2A 275 46.23 c.66.1.13 122868 1orrA 347 49.02 c.2.1.2 93460 1o89A 345 49.08 b.35.1.2,c.2.1.1 92644,92645 1fp1D 372 49.71 a.4.5.29,c.66.1.12 59939,59940 1ps9A 671 49.82 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2hcyA 347 49.88 1zq9A 285 50.27 c.66.1.24 125505 1xtpA 254 50.95 c.66.1.42 116031 2c5aA 379 50.95 c.2.1.2 129894 2aotA 292 51.21 c.66.1.19 127098 2r3sA 335 51.63 2b9eA 303 51.73 c.66.1.38 128124 1t2aA 375 53.45 c.2.1.2 99078 2gptA 523 53.76 2nxcA 254 54.13 c.66.1.39 138739 1kolA 398 54.21 b.35.1.2,c.2.1.1 77474,77475 2p8jA 209 54.82 2yyyA 343 55.36 1ebfA 358 55.87 c.2.1.3,d.81.1.2 30033,39948 1p0fA 373 56.57 b.35.1.2,c.2.1.1 87642,87643 1zmdA 474 56.59 3cggA 195 57.03 2yqzA 263 57.40 1z45A 699 58.07 b.30.5.4,c.2.1.2 124427,124428 2ozpA 345 58.56 2q46A 253 58.82 c.2.1.2 139825 1f8fA 371 60.91 b.35.1.2,c.2.1.1 83246,83247 2d8aA 348 62.18 1udcA 338 62.32 c.2.1.2 29785 2pxxA 215 62.41 1n8kA 374 62.59 b.35.1.2,c.2.1.1 80298,80299 2fcaA 213 62.91 c.66.1.53 133262 1edzA 320 63.13 c.2.1.7,c.58.1.2 30287,33935 1hyuA 521 64.16 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2cduA 452 64.38 2hrzA 342 64.40 2pwyA 258 64.46 1vlmA 219 64.81 c.66.1.41 108836 1o54A 277 65.22 c.66.1.13 92482 1zk7A 467 65.22 1duvG 333 66.31 c.78.1.1,c.78.1.1 35228,35229 3bkwA 243 67.11 1inlA 296 68.43 c.66.1.17 66220 3bgvA 313 68.63 2j3hA 345 68.71 1l3iA 192 68.93 c.66.1.22 77676 1y7tA 327 69.04 c.2.1.5,d.162.1.1 122718,122719 2ggsA 273 69.33 1ek6A 348 69.37 c.2.1.2 29800 1im8A 244 69.77 c.66.1.14 66212 2o57A 297 69.97 1u3wA 374 71.06 b.35.1.2,c.2.1.1 113013,113014 1ixkA 315 72.01 c.66.1.38 90716 1hyeA 313 72.06 c.2.1.5,d.162.1.1 61400,61401 1fp2A 352 72.17 a.4.5.29,c.66.1.12 59941,59942 1q7gA 359 73.26 c.2.1.3,d.81.1.2 96038,96039 1i9gA 280 73.57 c.66.1.13 62090 2i7cA 283 73.70 2p35A 259 73.77 1vj1A 363 74.22 b.35.1.2,c.2.1.1 100794,100795 1bdmA 327 74.29 c.2.1.5,d.162.1.1 30137,42104 1lvlA 458 74.56 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2pk3A 321 76.70 1y8qA 346 76.73 2h6eA 344 76.89 2eihA 343 77.21 2q0lA 311 77.60 2dm6A 333 79.25 b.35.1.2,c.2.1.1 131567,131568 2a4kA 263 79.28 c.2.1.2 126156 1trb 320 79.40 2jhfA 374 79.43 b.35.1.2,c.2.1.1 138314,138315 2v3aA 384 80.05 1n7hA 381 80.30 c.2.1.2 80250 2jahA 247 80.33 1iz0A 302 80.34 b.35.1.2,c.2.1.1 83821,83822 2p91A 285 80.66 2i6gA 199 80.73 c.66.1.44 137096 1qyrA 252 81.25 c.66.1.24 104657 1b0aA 288 81.51 c.2.1.7,c.58.1.2 30286,33934 2gv8A 447 82.10 c.3.1.5,c.3.1.5 135759,135760 1fmcA 255 82.11 c.2.1.2 29856 2gpyA 233 82.15 1cydA 244 82.70 c.2.1.2 29825 1yb5A 351 83.84 b.35.1.2,c.2.1.1 116601,116602 1jw9B 249 84.40 c.111.1.1 67377 1y5mA 276 85.11 c.2.1.2 122645 2cmgA 262 85.62 2r9zA 463 85.98 1w6uA 302 86.36 c.2.1.2 114288 2gdzA 267 86.90 c.2.1.2 135043 1w4xA 542 87.03 c.3.1.5,c.3.1.5 109171,109172 2igtA 332 88.81 c.66.1.51 137401 1gegA 256 88.99 c.2.1.2 29888