# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.003088 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.003540 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 0.003685 2izzA 322 0.003876 2h78A 302 0.004716 2p4qA 497 0.005119 2pgdA 482 0.005581 a.100.1.1,c.2.1.6 18778,30190 1np3A 338 0.005991 a.100.1.2,c.2.1.6 85946,85947 1yb4A 295 0.006740 2pgd 482 0.006761 2rcyA 262 0.006913 2ew2A 316 0.007500 2cvzA 289 0.008729 a.100.1.1,c.2.1.6 130890,130891 3c24A 286 0.009199 1bg6A 359 0.009290 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.009810 2f1kA 279 0.01185 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 0.01397 a.100.1.12,c.2.1.6 134646,134647 1ks9A 291 0.01404 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.01637 1zcjA 463 0.01683 2graA 277 0.01912 1evyA 366 0.02388 a.100.1.6,c.2.1.6 18811,30215 2pv7A 298 0.02628 2qytA 317 0.02659 1f0yA 302 0.02707 a.100.1.3,c.2.1.6 18793,30197 1qmgA 524 0.03004 a.100.1.2,c.2.1.6 18785,30182 1x0vA 354 0.03774 1bg6 359 0.03823 1txgA 335 0.04607 a.100.1.6,c.2.1.6 112775,112776 1zejA 293 0.04740 1i36A 264 0.05124 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 0.05803 2o3jA 481 0.06984 1mv8A 436 0.08991 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2i76A 276 0.09091 1jayA 212 0.09865 c.2.1.6 66478 1qv9A 283 0.1161 c.127.1.1 96356 1dliA 402 0.2259 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.2329 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2axqA 467 0.3892 1ygyA 529 0.4965 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1gdhA 320 0.5096 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.5311 c.2.1.4,c.23.12.1 30088,31348 2fssA 365 0.6147 2dbqA 334 0.6324 1j4aA 333 0.7218 c.2.1.4,c.23.12.1 71502,71503 1mx3A 347 0.7507 c.2.1.4,c.23.12.1 79638,79639 1wwkA 307 0.7530 1li4A 432 0.7982 c.2.1.4,c.23.12.3 84616,84617 2pi1A 334 0.8333 1xdwA 331 0.8939 2j6iA 364 0.8965 1dxy 333 0.9103 1gpjA 404 1.003 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2o4cA 380 1.011 2gcgA 330 1.056 1x7dA 350 1.074 c.2.1.13 114927 1dxyA 333 1.263 c.2.1.4,c.23.12.1 30094,31354 1omoA 322 1.360 c.2.1.13 104017 1v8bA 479 1.576 c.2.1.4,c.23.12.3 113564,113565 2cukA 311 1.591 1pjcA 361 1.592 c.2.1.4,c.23.12.2 30101,31361 2g76A 335 1.599 1t2dA 322 1.609 c.2.1.5,d.162.1.1 99084,99085 1sc6A 404 1.636 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1lssA 140 1.649 c.2.1.9 74246 1guzA 310 1.653 c.2.1.5,d.162.1.1 65586,65587 1pzgA 331 1.709 c.2.1.5,d.162.1.1 95425,95426 1lldA 319 1.787 c.2.1.5,d.162.1.1 30177,42144 2d0iA 333 1.864 1hyhA 309 1.988 c.2.1.5,d.162.1.1 30150,42117 1qp8A 303 2.021 c.2.1.4,c.23.12.1 30092,31352 1ff9A 450 2.054 c.2.1.3,d.81.1.2 30039,39954 2b0jA 358 2.059 a.100.1.11,c.2.1.6 127639,127640 1uxjA 309 2.127 c.2.1.5,d.162.1.1 108112,108113 2vhxA 377 2.137 2ewdA 317 2.195 2v7pA 310 2.270 2vojA 371 2.547 2ho3A 325 2.591 2eklA 313 2.712 1f06A 320 2.767 c.2.1.3,d.81.1.3 59556,59557 1a5zA 319 2.950 c.2.1.5,d.162.1.1 30181,42148 2eggA 297 3.032 1p77A 272 3.166 c.2.1.7,c.58.1.5 94214,94215 2nvwA 479 3.248 c.2.1.3,d.81.1.5 138665,138666 2o4uX 334 3.316 3ceaA 346 3.352 1u8xX 472 3.482 c.2.1.5,d.162.1.2 107741,107742 2i6tA 303 3.743 6ldhA 329 3.903 c.2.1.5,d.162.1.1 30161,42128 3bioA 304 3.941 2dc1A 236 4.205 1ez4A 318 4.222 c.2.1.5,d.162.1.1 64917,64918 2hk9A 275 4.282 1obbA 480 4.316 c.2.1.5,d.162.1.2 86760,86761 2p2sA 336 4.389 1l7dA 384 4.642 c.2.1.4,c.23.12.2 77774,77775 2q4eA 362 5.098 1tltA 319 5.114 c.2.1.3,d.81.1.5 107135,107136 3c1aA 315 5.188 1nytA 271 5.266 c.2.1.7,c.58.1.5 86417,86418 2nloA 302 5.293 1h6dA 433 5.299 c.2.1.3,d.81.1.5 65656,65657 2d5cA 263 5.403 1lsuA 147 5.502 c.2.1.9 74250 1xeaA 323 5.536 c.2.1.3,d.81.1.5 109572,109573 1lehA 364 5.579 c.2.1.7,c.58.1.1 30268,33916 2aefA 234 5.763 1vjtA 483 5.951 c.2.1.5,d.162.1.2 100833,100834 2ixaA 444 5.973 2glxA 332 6.576 1nvmB 312 6.860 c.2.1.3,d.81.1.1 86251,86252 1x13A 401 6.955 1rydA 387 7.118 c.2.1.3,d.81.1.5 118801,118802 2hmvA 144 7.476 c.2.1.9 136615 1npyA 271 7.942 c.2.1.7,c.58.1.5 85995,85996 2g1uA 155 8.785 2r6jA 318 9.038 1id1A 153 9.193 c.2.1.9 62286 2g17A 337 9.244 c.2.1.3,d.81.1.1 134512,134513 1s6yA 450 9.414 c.2.1.5,d.162.1.2 105314,105315 1zh8A 340 9.858 c.2.1.3,d.81.1.5 125077,125078 1up7A 417 10.67 c.2.1.5,d.162.1.2 113374,113375 2r00A 336 11.06 1sb8A 352 11.37 c.2.1.2 105410 2hjsA 340 11.63 c.2.1.3,d.81.1.1 136547,136548 1y1pA 342 11.66 c.2.1.2 122550 1hdoA 206 11.82 c.2.1.2 60965 1luaA 287 11.85 c.2.1.7,c.58.1.4 78216,78217 1vknA 351 12.34 c.2.1.3,d.81.1.1 108676,108677 2ejwA 332 12.51 1nvtA 287 12.58 c.2.1.7,c.58.1.5 86270,86271 1drw 273 12.59 1drwA 273 13.52 c.2.1.3,d.81.1.3 30057,39972 1j5pA 253 13.82 d.81.1.3,c.2.1.3 71577,83092 1y81A 138 14.01 c.2.1.8 122731 1yqdA 366 14.09 1fl2A 310 14.65 c.3.1.5,c.3.1.5 59869,59870 2pzmA 330 14.74 2b69A 343 15.94 c.2.1.2 127974 1xgkA 352 15.98 c.2.1.2 115286 1i2cA 404 15.99 c.2.1.2 83666 2ph5A 480 16.34 2nqtA 352 16.52 2gz1A 366 16.53 c.2.1.3,d.81.1.1 135887,135888 1oc2A 348 16.71 c.2.1.2 92765 2q1sA 377 16.88 2gn4A 344 16.92 1z7bA 358 17.10 c.2.1.2 124599 2cf5A 357 18.57 2o7sA 523 18.63 1lc0A 294 18.76 c.2.1.3,d.81.1.4 73823,73824 3cc8A 230 19.37 3c85A 183 19.42 2d59A 144 19.79 c.2.1.8 131266 2q49A 359 19.82 c.2.1.3,d.81.1.1 139831,139832 1mldA 314 20.36 c.2.1.5,d.162.1.1 30122,42089 2exxA 306 20.75 1ve3A 227 22.14 c.66.1.43 120010 2cmd 312 22.76 1uufA 369 23.16 b.35.1.2,c.2.1.1 100006,100007 2p5yA 311 23.43 2cmdA 312 23.59 c.2.1.5,d.162.1.1 30135,42102 1lluA 342 23.81 b.35.1.2,c.2.1.1 91064,91065 2fk8A 318 23.83 c.66.1.18 133648 1iukA 140 24.01 c.2.1.8 83712 1c1dA 355 24.35 c.2.1.7,c.58.1.1 30270,33918 1wznA 252 24.40 c.66.1.43 121525 1vi2A 300 24.90 c.2.1.7,c.58.1.5 100726,100727 2bllA 345 25.45 c.2.1.2 128733 2c29D 337 27.08 3c8mA 331 27.34 1l1eA 287 28.23 c.66.1.18 73454 1xvaA 292 28.34 c.66.1.5 34183 1o6zA 303 30.03 c.2.1.5,d.162.1.1 81107,81108 2z1mA 345 30.76 1nhpA 447 30.82 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2zbwA 335 30.98 1p91A 269 31.07 c.66.1.33 94378 1nhsA 447 31.80 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1xu9A 286 32.16 c.2.1.2 116052 2bkaA 242 32.47 c.2.1.2 128666 1kyqA 274 32.49 c.2.1.11,e.37.1.1 73281,73282 1wvgA 359 32.63 c.2.1.2 121339 2a35A 215 32.91 c.2.1.2 126072 1ys4A 354 33.07 1vl5A 260 33.41 c.66.1.41 108720 2p4hX 322 33.72 1vj0A 380 33.90 b.35.1.2,c.2.1.1 100786,100787 1b7gO 340 34.07 c.2.1.3,d.81.1.1 29992,39907 2czcA 334 34.17 d.81.1.1 131044 1uirA 314 34.18 c.66.1.17 99429 1kpgA 287 35.85 c.66.1.18 68735 1r6dA 337 35.89 c.2.1.2 97148 1xxlA 239 36.63 c.66.1.41 116203 1orrA 347 36.73 c.2.1.2 93460 1xg5A 279 37.79 c.2.1.2 115277 1qamA 244 38.60 c.66.1.24 34220 2ex4A 241 39.04 c.66.1.42 132516 1ebfA 358 39.43 c.2.1.3,d.81.1.2 30033,39948 1rkxA 357 40.39 c.2.1.2 97631 1yb2A 275 40.85 c.66.1.13 122868 1yovA 537 41.02 c.111.1.2 123785 1fp1D 372 41.07 a.4.5.29,c.66.1.12 59939,59940 2gasA 307 41.44 1o89A 345 41.93 b.35.1.2,c.2.1.1 92644,92645 1yxmA 303 42.63 c.2.1.2 124192 1ps9A 671 43.58 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1ri5A 298 44.38 c.66.1.34 97502 2gptA 523 45.23 1y8cA 246 45.87 c.66.1.43 116563 2c5aA 379 46.82 c.2.1.2 129894 1pl8A 356 47.08 b.35.1.2,c.2.1.1 94878,94879 2q46A 253 47.29 c.2.1.2 139825 1udcA 338 47.33 c.2.1.2 29785 1z45A 699 47.75 b.30.5.4,c.2.1.2 124427,124428 2fcaA 213 49.04 c.66.1.53 133262 1hyeA 313 49.46 c.2.1.5,d.162.1.1 61400,61401 1zmdA 474 49.58 1zq9A 285 50.15 c.66.1.24 125505 1f8fA 371 50.16 b.35.1.2,c.2.1.1 83246,83247 1xtpA 254 50.63 c.66.1.42 116031 1t2aA 375 50.64 c.2.1.2 99078 2nxcA 254 50.84 c.66.1.39 138739 1xq6A 253 51.25 c.2.1.2 115829 2aotA 292 52.03 c.66.1.19 127098 2p8jA 209 52.08 2ozpA 345 52.37 2hcyA 347 52.57 1o54A 277 52.71 c.66.1.13 92482 3cggA 195 53.04 1kolA 398 53.35 b.35.1.2,c.2.1.1 77474,77475 2d8aA 348 53.38 2yyyA 343 54.45 2yqzA 263 54.74 1p0fA 373 54.89 b.35.1.2,c.2.1.1 87642,87643 1bdmA 327 55.16 c.2.1.5,d.162.1.1 30137,42104 1edzA 320 55.28 c.2.1.7,c.58.1.2 30287,33935 2cduA 452 55.98 2i7cA 283 56.15 2b9eA 303 56.79 c.66.1.38 128124 1duvG 333 57.18 c.78.1.1,c.78.1.1 35228,35229 2pwyA 258 57.88 1n8kA 374 57.96 b.35.1.2,c.2.1.1 80298,80299 1ek6A 348 58.01 c.2.1.2 29800 2o57A 297 58.08 2ggsA 273 59.22 1hyuA 521 59.45 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2r3sA 335 60.17 2pxxA 215 60.38 1q7gA 359 61.23 c.2.1.3,d.81.1.2 96038,96039 1y7tA 327 61.62 c.2.1.5,d.162.1.1 122718,122719 1vlmA 219 61.92 c.66.1.41 108836 1fp2A 352 62.06 a.4.5.29,c.66.1.12 59941,59942 1zk7A 467 62.17 1im8A 244 62.44 c.66.1.14 66212 3bkwA 243 63.27 2p35A 259 64.06 2j3hA 345 65.41 1ixkA 315 65.86 c.66.1.38 90716 1l3iA 192 65.86 c.66.1.22 77676 2hrzA 342 66.86 2a4kA 263 68.90 c.2.1.2 126156 1i9gA 280 69.25 c.66.1.13 62090 2q0lA 311 69.27 1inlA 296 69.86 c.66.1.17 66220 2gpyA 233 70.16 2dm6A 333 70.62 b.35.1.2,c.2.1.1 131567,131568 2pk3A 321 70.71 2h6eA 344 71.12 1y8qA 346 71.62 2jahA 247 71.84 1qyrA 252 72.10 c.66.1.24 104657 3bgvA 313 72.39 4uagA 437 74.16 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1lvlA 458 74.28 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1trbA 320 74.78 c.3.1.5,c.3.1.5 30529,30530 1q1rA 431 74.82 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1u3wA 374 74.89 b.35.1.2,c.2.1.1 113013,113014 1w4xA 542 75.20 c.3.1.5,c.3.1.5 109171,109172 1trb 320 75.77 2cmgA 262 76.69 1cydA 244 77.33 c.2.1.2 29825 1jw9B 249 77.58 c.111.1.1 67377 1b0aA 288 77.84 c.2.1.7,c.58.1.2 30286,33934 2i6gA 199 78.01 c.66.1.44 137096 1iz0A 302 78.96 b.35.1.2,c.2.1.1 83821,83822 2igtA 332 79.24 c.66.1.51 137401 1b6rA 355 79.41 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1n7hA 381 79.63 c.2.1.2 80250 1uc8A 280 80.16 c.30.1.6,d.142.1.7 99165,99166 2v3aA 384 80.61 2gdzA 267 81.11 c.2.1.2 135043 1y5mA 276 81.17 c.2.1.2 122645 1fmcA 255 81.29 c.2.1.2 29856 2yxdA 183 82.59 2r9zA 463 84.52 1yb5A 351 84.84 b.35.1.2,c.2.1.1 116601,116602 2gv8A 447 85.11 c.3.1.5,c.3.1.5 135759,135760 2eihA 343 85.22 1dl5A 317 85.30 c.66.1.7,d.197.1.1 64720,64721 1yzhA 214 85.37 c.66.1.53 124277 1vj1A 363 85.89 b.35.1.2,c.2.1.1 100794,100795 2gh1A 301 86.47 c.66.1.49 135170 2jhfA 374 86.71 b.35.1.2,c.2.1.1 138314,138315 1gegA 256 87.63 c.2.1.2 29888 2p91A 285 87.73 1othA 321 89.21 c.78.1.1,c.78.1.1 35260,35261 3grsA 478 89.35 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152