# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.03161 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.03507 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.04258 1yqgA 263 0.04524 2h78A 302 0.04966 1yb4A 295 0.05145 2p4qA 497 0.05635 2pgdA 482 0.06319 a.100.1.1,c.2.1.6 18778,30190 2pgd 482 0.06644 2rcyA 262 0.07277 1np3A 338 0.07515 a.100.1.2,c.2.1.6 85946,85947 2cvzA 289 0.08962 a.100.1.1,c.2.1.6 130890,130891 2graA 277 0.09167 3c24A 286 0.09647 2dpoA 319 0.09813 2ew2A 316 0.1194 1bg6A 359 0.1255 a.100.1.5,c.2.1.6 18810,30214 2g5cA 281 0.1263 a.100.1.12,c.2.1.6 134646,134647 2f1kA 279 0.1309 a.100.1.12,c.2.1.6 132772,132773 1f0yA 302 0.1394 a.100.1.3,c.2.1.6 18793,30197 1yrlA 491 0.1866 1zcjA 463 0.1920 2pv7A 298 0.2022 1evyA 366 0.2111 a.100.1.6,c.2.1.6 18811,30215 1ks9A 291 0.2291 a.100.1.7,c.2.1.6 68857,68858 2qytA 317 0.2653 1x0vA 354 0.3404 1txgA 335 0.3407 a.100.1.6,c.2.1.6 112775,112776 1bg6 359 0.3456 2i76A 276 0.3509 1qmgA 524 0.3664 a.100.1.2,c.2.1.6 18785,30182 1zejA 293 0.3847 1i36A 264 0.4020 a.100.1.8,c.2.1.6 71108,71109 1mv8A 436 0.5050 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1jayA 212 0.5265 c.2.1.6 66478 1dljA 402 0.5361 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2o3jA 481 0.5647 1z82A 335 0.6500 1dliA 402 0.8311 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2axqA 467 1.164 1gdhA 320 1.575 c.2.1.4,c.23.12.1 30095,31355 1qv9A 283 1.677 c.127.1.1 96356 1mx3A 347 1.699 c.2.1.4,c.23.12.1 79638,79639 1wwkA 307 1.898 2nacA 393 1.954 c.2.1.4,c.23.12.1 30088,31348 2fssA 365 2.063 1ygyA 529 2.069 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1li4A 432 2.368 c.2.1.4,c.23.12.3 84616,84617 1xdwA 331 2.473 1j4aA 333 2.592 c.2.1.4,c.23.12.1 71502,71503 2j6iA 364 2.625 2g76A 335 2.628 2eklA 313 2.691 2dbqA 334 2.726 1dxy 333 2.731 2gcgA 330 2.831 2pi1A 334 2.915 1x7dA 350 2.932 c.2.1.13 114927 1pjcA 361 2.966 c.2.1.4,c.23.12.2 30101,31361 2d0iA 333 3.156 2b0jA 358 3.209 a.100.1.11,c.2.1.6 127639,127640 1sc6A 404 3.403 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxyA 333 3.508 c.2.1.4,c.23.12.1 30094,31354 1v8bA 479 3.509 c.2.1.4,c.23.12.3 113564,113565 1omoA 322 3.559 c.2.1.13 104017 2cukA 311 3.628 1qp8A 303 3.709 c.2.1.4,c.23.12.1 30092,31352 1gpjA 404 3.777 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2o4cA 380 3.952 2ewdA 317 4.472 1t2dA 322 4.787 c.2.1.5,d.162.1.1 99084,99085 2vhxA 377 5.282 2nvwA 479 5.337 c.2.1.3,d.81.1.5 138665,138666 2o4uX 334 5.427 1guzA 310 5.717 c.2.1.5,d.162.1.1 65586,65587 2p2sA 336 5.733 1ff9A 450 5.734 c.2.1.3,d.81.1.2 30039,39954 1lldA 319 5.831 c.2.1.5,d.162.1.1 30177,42144 1hyhA 309 6.374 c.2.1.5,d.162.1.1 30150,42117 2q4eA 362 6.691 1f06A 320 6.716 c.2.1.3,d.81.1.3 59556,59557 2vojA 371 6.794 1xeaA 323 6.978 c.2.1.3,d.81.1.5 109572,109573 6ldhA 329 7.120 c.2.1.5,d.162.1.1 30161,42128 1uxjA 309 7.221 c.2.1.5,d.162.1.1 108112,108113 1h6dA 433 7.330 c.2.1.3,d.81.1.5 65656,65657 3ceaA 346 7.518 2glxA 332 7.536 1pzgA 331 7.601 c.2.1.5,d.162.1.1 95425,95426 2ho3A 325 7.735 1l7dA 384 7.978 c.2.1.4,c.23.12.2 77774,77775 2dc1A 236 8.021 1lehA 364 8.826 c.2.1.7,c.58.1.1 30268,33916 2eggA 297 9.156 2v7pA 310 9.626 1tltA 319 9.712 c.2.1.3,d.81.1.5 107135,107136 1drw 273 9.849 1lssA 140 9.896 c.2.1.9 74246 1rydA 387 9.946 c.2.1.3,d.81.1.5 118801,118802 3bioA 304 10.24 1ez4A 318 10.74 c.2.1.5,d.162.1.1 64917,64918 2hk9A 275 10.75 1p77A 272 10.83 c.2.1.7,c.58.1.5 94214,94215 2i6tA 303 10.90 1a5zA 319 11.77 c.2.1.5,d.162.1.1 30181,42148 1x13A 401 12.45 3c1aA 315 13.21 1nvmB 312 14.10 c.2.1.3,d.81.1.1 86251,86252 1zh8A 340 14.76 c.2.1.3,d.81.1.5 125077,125078 1drwA 273 15.09 c.2.1.3,d.81.1.3 30057,39972 1nytA 271 15.15 c.2.1.7,c.58.1.5 86417,86418 1luaA 287 15.47 c.2.1.7,c.58.1.4 78216,78217 1u8xX 472 16.42 c.2.1.5,d.162.1.2 107741,107742 1y1pA 342 17.23 c.2.1.2 122550 1xgkA 352 18.67 c.2.1.2 115286 2nloA 302 19.23 1j5pA 253 19.75 d.81.1.3,c.2.1.3 71577,83092 2g17A 337 20.14 c.2.1.3,d.81.1.1 134512,134513 2hjsA 340 20.15 c.2.1.3,d.81.1.1 136547,136548 2r6jA 318 20.92 1hdoA 206 20.92 c.2.1.2 60965 2ejwA 332 21.13 1vknA 351 22.51 c.2.1.3,d.81.1.1 108676,108677 2gn4A 344 22.91 2aefA 234 23.33 1obbA 480 24.21 c.2.1.5,d.162.1.2 86760,86761 1c1dA 355 24.74 c.2.1.7,c.58.1.1 30270,33918 2d5cA 263 25.03 1sb8A 352 25.04 c.2.1.2 105410 1lsuA 147 26.13 c.2.1.9 74250 2g1uA 155 26.96 2ixaA 444 27.43 2bllA 345 27.58 c.2.1.2 128733 2r00A 336 28.09 1z7bA 358 28.14 c.2.1.2 124599 2d59A 144 28.30 c.2.1.8 131266 2hmvA 144 28.50 c.2.1.9 136615 1nvtA 287 28.97 c.2.1.7,c.58.1.5 86270,86271 2exxA 306 29.67 1vi2A 300 29.71 c.2.1.7,c.58.1.5 100726,100727 1vjtA 483 30.53 c.2.1.5,d.162.1.2 100833,100834 2gasA 307 30.63 2ph5A 480 30.78 1o6zA 303 32.00 c.2.1.5,d.162.1.1 81107,81108 1iukA 140 32.17 c.2.1.8 83712 1fl2A 310 33.15 c.3.1.5,c.3.1.5 59869,59870 2a4kA 263 33.22 c.2.1.2 126156 2gz1A 366 33.24 c.2.1.3,d.81.1.1 135887,135888 2c29D 337 33.41 1yxmA 303 34.17 c.2.1.2 124192 1xu9A 286 34.30 c.2.1.2 116052 2q49A 359 35.11 c.2.1.3,d.81.1.1 139831,139832 1npyA 271 35.45 c.2.1.7,c.58.1.5 85995,85996 1y81A 138 39.11 c.2.1.8 122731 1vl5A 260 40.10 c.66.1.41 108720 1lc0A 294 42.35 c.2.1.3,d.81.1.4 73823,73824 2cmdA 312 42.42 c.2.1.5,d.162.1.1 30135,42102 2cmd 312 42.56 2nqtA 352 42.75 1wmaA 276 42.87 c.2.1.2 121042 2q1sA 377 44.41 1xg5A 279 44.76 c.2.1.2 115277 2bkaA 242 44.80 c.2.1.2 128666 3c8mA 331 45.62 1up7A 417 45.74 c.2.1.5,d.162.1.2 113374,113375 2j3hA 345 46.65 1xq6A 253 48.66 c.2.1.2 115829 1uufA 369 49.44 b.35.1.2,c.2.1.1 100006,100007 3c85A 183 49.58 3cc8A 230 50.69 1ve3A 227 50.82 c.66.1.43 120010 2p4hX 322 50.99 1yqdA 366 51.52 1ydeA 270 52.80 c.2.1.2 122980 2gdzA 267 53.33 c.2.1.2 135043 1im8A 244 53.99 c.66.1.14 66212 2p5yA 311 54.00 1y8cA 246 55.37 c.66.1.43 116563 2q46A 253 57.56 c.2.1.2 139825 2o7sA 523 57.68 2dm6A 333 57.89 b.35.1.2,c.2.1.1 131567,131568 1bdbA 277 58.01 c.2.1.2 29874 2cf5A 357 58.22 1bdb 277 58.27 2zbwA 335 58.28 2cduA 452 59.23 1ri5A 298 60.16 c.66.1.34 97502 2nxcA 254 61.92 c.66.1.39 138739 1zbqA 327 62.11 c.2.1.2 124862 2pd6A 264 62.85 1nhsA 447 63.93 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1id1A 153 63.99 c.2.1.9 62286 2fk8A 318 64.69 c.66.1.18 133648 1nhpA 447 64.79 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1hxhA 253 64.92 c.2.1.2 76725 2z1nA 260 65.23 1lluA 342 65.25 b.35.1.2,c.2.1.1 91064,91065 1ys4A 354 66.27 1cydA 244 66.48 c.2.1.2 29825 1oc2A 348 66.70 c.2.1.2 92765 2o57A 297 68.10 1s6yA 450 68.33 c.2.1.5,d.162.1.2 105314,105315 2pk3A 321 68.44 2z1mA 345 68.54 3grs 478 68.68 2jahA 247 69.44 1othA 321 69.74 c.78.1.1,c.78.1.1 35260,35261 1vl8A 267 70.04 c.2.1.2 108733 1xxlA 239 70.38 c.66.1.41 116203 2czcA 334 70.53 d.81.1.1 131044 1fmcA 255 70.60 c.2.1.2 29856 1yb1A 272 71.61 c.2.1.2 116599 2b9eA 303 73.50 c.66.1.38 128124 2a35A 215 73.61 c.2.1.2 126072 1w6uA 302 73.63 c.2.1.2 114288 2pzmA 330 73.88 1iy8A 267 74.18 c.2.1.2 83774 1ml4A 308 74.61 c.78.1.1,c.78.1.1 79255,79256 2dwcA 433 74.65 1hyeA 313 75.04 c.2.1.5,d.162.1.1 61400,61401 1b7gO 340 76.41 c.2.1.3,d.81.1.1 29992,39907 3bgvA 313 76.56 3grsA 478 76.75 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1y5mA 276 76.77 c.2.1.2 122645 1wznA 252 77.33 c.66.1.43 121525 1nffA 260 78.32 c.2.1.2 80457 1k2wA 256 79.44 c.2.1.2 90927 1hdcA 253 80.14 c.2.1.2 29862 1sbyA 254 80.39 c.2.1.2 118930 1spxA 278 81.17 c.2.1.2 98958 1zk4A 251 81.43 c.2.1.2 125176 1o89A 345 81.43 b.35.1.2,c.2.1.1 92644,92645 1mldA 314 81.47 c.2.1.5,d.162.1.1 30122,42089 2ozvA 260 82.09 3bxoA 239 82.16 1l3iA 192 82.65 c.66.1.22 77676 2p91A 285 82.73 1e6wA 260 83.73 c.2.1.2 59326 2p8jA 209 83.74 1x7gA 261 84.08 c.2.1.2 114929 2pnfA 248 84.69 2cfcA 250 85.78 3cggA 195 86.12 1t2aA 375 87.56 c.2.1.2 99078