# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.003973 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.004045 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 0.004993 2pgd 482 0.005288 2pgdA 482 0.005762 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 0.006063 2izzA 322 0.006095 2h78A 302 0.006469 1np3A 338 0.006902 a.100.1.2,c.2.1.6 85946,85947 1yb4A 295 0.007767 2rcyA 262 0.008758 2dpoA 319 0.009503 1bg6A 359 0.01014 a.100.1.5,c.2.1.6 18810,30214 2cvzA 289 0.01082 a.100.1.1,c.2.1.6 130890,130891 2ew2A 316 0.01086 3c24A 286 0.01175 1ks9A 291 0.01329 a.100.1.7,c.2.1.6 68857,68858 2graA 277 0.01469 2f1kA 279 0.01542 a.100.1.12,c.2.1.6 132772,132773 1yrlA 491 0.01569 2g5cA 281 0.01942 a.100.1.12,c.2.1.6 134646,134647 1zcjA 463 0.02080 2pv7A 298 0.03133 1f0yA 302 0.03270 a.100.1.3,c.2.1.6 18793,30197 1qmgA 524 0.03375 a.100.1.2,c.2.1.6 18785,30182 2qytA 317 0.03414 1evyA 366 0.03873 a.100.1.6,c.2.1.6 18811,30215 1x0vA 354 0.04159 1bg6 359 0.05006 1txgA 335 0.06847 a.100.1.6,c.2.1.6 112775,112776 1zejA 293 0.06858 1i36A 264 0.07742 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 0.08985 1mv8A 436 0.09320 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1qv9A 283 0.1022 c.127.1.1 96356 1jayA 212 0.1028 c.2.1.6 66478 2i76A 276 0.1282 2o3jA 481 0.1502 1dljA 402 0.2061 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 0.2192 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1gdhA 320 0.4229 c.2.1.4,c.23.12.1 30095,31355 1ygyA 529 0.4579 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2nacA 393 0.4685 c.2.1.4,c.23.12.1 30088,31348 2fssA 365 0.4749 2axqA 467 0.6031 2dbqA 334 0.6221 2j6iA 364 0.6599 2eklA 313 0.6709 1wwkA 307 0.6949 1j4aA 333 0.7691 c.2.1.4,c.23.12.1 71502,71503 1li4A 432 0.7864 c.2.1.4,c.23.12.3 84616,84617 1dxy 333 0.8007 1mx3A 347 0.8118 c.2.1.4,c.23.12.1 79638,79639 2o4cA 380 0.8383 1xdwA 331 0.9664 2b0jA 358 1.088 a.100.1.11,c.2.1.6 127639,127640 2pi1A 334 1.152 2d0iA 333 1.213 1v8bA 479 1.259 c.2.1.4,c.23.12.3 113564,113565 2cukA 311 1.277 1gpjA 404 1.350 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x7dA 350 1.382 c.2.1.13 114927 1dxyA 333 1.405 c.2.1.4,c.23.12.1 30094,31354 1sc6A 404 1.455 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1pjcA 361 1.541 c.2.1.4,c.23.12.2 30101,31361 1omoA 322 1.604 c.2.1.13 104017 2gcgA 330 1.616 1qp8A 303 1.658 c.2.1.4,c.23.12.1 30092,31352 1f06A 320 2.160 c.2.1.3,d.81.1.3 59556,59557 1lssA 140 2.238 c.2.1.9 74246 1pzgA 331 2.408 c.2.1.5,d.162.1.1 95425,95426 1guzA 310 2.529 c.2.1.5,d.162.1.1 65586,65587 2ewdA 317 2.542 2g76A 335 2.556 2vhxA 377 2.558 2nvwA 479 2.565 c.2.1.3,d.81.1.5 138665,138666 2ho3A 325 2.635 1lldA 319 2.705 c.2.1.5,d.162.1.1 30177,42144 1ff9A 450 2.734 c.2.1.3,d.81.1.2 30039,39954 2vojA 371 2.797 1hyhA 309 2.848 c.2.1.5,d.162.1.1 30150,42117 2q4eA 362 3.038 1uxjA 309 3.300 c.2.1.5,d.162.1.1 108112,108113 3ceaA 346 3.326 2o4uX 334 3.780 2dc1A 236 3.821 2v7pA 310 3.841 1xeaA 323 3.854 c.2.1.3,d.81.1.5 109572,109573 6ldhA 329 3.963 c.2.1.5,d.162.1.1 30161,42128 2p2sA 336 3.968 1l7dA 384 4.183 c.2.1.4,c.23.12.2 77774,77775 1tltA 319 4.297 c.2.1.3,d.81.1.5 107135,107136 1h6dA 433 4.363 c.2.1.3,d.81.1.5 65656,65657 3bioA 304 4.443 2eggA 297 4.511 1p77A 272 4.556 c.2.1.7,c.58.1.5 94214,94215 1lsuA 147 4.959 c.2.1.9 74250 3c1aA 315 5.078 2i6tA 303 5.133 2glxA 332 5.218 1x13A 401 5.234 1u8xX 472 5.913 c.2.1.5,d.162.1.2 107741,107742 1a5zA 319 6.014 c.2.1.5,d.162.1.1 30181,42148 1rydA 387 6.334 c.2.1.3,d.81.1.5 118801,118802 1ez4A 318 6.336 c.2.1.5,d.162.1.1 64917,64918 1t2dA 322 6.471 c.2.1.5,d.162.1.1 99084,99085 1obbA 480 6.616 c.2.1.5,d.162.1.2 86760,86761 1lehA 364 6.678 c.2.1.7,c.58.1.1 30268,33916 2hk9A 275 6.758 2hmvA 144 6.936 c.2.1.9 136615 1nytA 271 7.154 c.2.1.7,c.58.1.5 86417,86418 1nvmB 312 7.246 c.2.1.3,d.81.1.1 86251,86252 2g17A 337 7.436 c.2.1.3,d.81.1.1 134512,134513 2d5cA 263 7.573 2nloA 302 7.867 2r6jA 318 8.090 2aefA 234 8.535 1zh8A 340 8.736 c.2.1.3,d.81.1.5 125077,125078 1drw 273 9.325 1y1pA 342 9.457 c.2.1.2 122550 2ixaA 444 9.774 1vjtA 483 10.07 c.2.1.5,d.162.1.2 100833,100834 1vknA 351 10.08 c.2.1.3,d.81.1.1 108676,108677 2g1uA 155 10.51 1drwA 273 11.38 c.2.1.3,d.81.1.3 30057,39972 1sb8A 352 11.61 c.2.1.2 105410 2ejwA 332 12.54 1yqdA 366 12.62 2q49A 359 13.69 c.2.1.3,d.81.1.1 139831,139832 2ph5A 480 14.72 1xgkA 352 14.87 c.2.1.2 115286 2hjsA 340 15.19 c.2.1.3,d.81.1.1 136547,136548 1j5pA 253 15.43 d.81.1.3,c.2.1.3 71577,83092 1hdoA 206 15.64 c.2.1.2 60965 2r00A 336 15.67 1id1A 153 15.79 c.2.1.9 62286 1npyA 271 16.41 c.2.1.7,c.58.1.5 85995,85996 2gn4A 344 16.51 1up7A 417 17.17 c.2.1.5,d.162.1.2 113374,113375 2c29D 337 17.34 1luaA 287 17.46 c.2.1.7,c.58.1.4 78216,78217 1uufA 369 18.32 b.35.1.2,c.2.1.1 100006,100007 2cf5A 357 18.55 1fl2A 310 18.57 c.3.1.5,c.3.1.5 59869,59870 1s6yA 450 19.73 c.2.1.5,d.162.1.2 105314,105315 1lc0A 294 19.98 c.2.1.3,d.81.1.4 73823,73824 1y81A 138 20.51 c.2.1.8 122731 2pzmA 330 20.98 1lluA 342 21.16 b.35.1.2,c.2.1.1 91064,91065 2nqtA 352 21.26 1nvtA 287 22.29 c.2.1.7,c.58.1.5 86270,86271 2gz1A 366 22.44 c.2.1.3,d.81.1.1 135887,135888 2exxA 306 22.54 1i2cA 404 22.99 c.2.1.2 83666 1iukA 140 23.81 c.2.1.8 83712 1kyqA 274 24.44 c.2.1.11,e.37.1.1 73281,73282 1oc2A 348 24.70 c.2.1.2 92765 2gasA 307 24.80 2q1sA 377 24.90 1nhpA 447 25.07 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1nhsA 447 25.30 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2d59A 144 25.32 c.2.1.8 131266 2bkaA 242 27.12 c.2.1.2 128666 2fk8A 318 28.58 c.66.1.18 133648 1z7bA 358 28.91 c.2.1.2 124599 3c85A 183 29.97 2cmd 312 30.41 3c8mA 331 31.27 1ve3A 227 31.46 c.66.1.43 120010 1ri5A 298 31.53 c.66.1.34 97502 2o7sA 523 32.01 1o6zA 303 32.93 c.2.1.5,d.162.1.1 81107,81108 1b7gO 340 33.09 c.2.1.3,d.81.1.1 29992,39907 2p5yA 311 33.26 2czcA 334 33.76 d.81.1.1 131044 2cmdA 312 33.86 c.2.1.5,d.162.1.1 30135,42102 1ys4A 354 34.61 3cc8A 230 35.32 1yxmA 303 35.90 c.2.1.2 124192 1xu9A 286 35.93 c.2.1.2 116052 1vi2A 300 36.83 c.2.1.7,c.58.1.5 100726,100727 3ckkA 235 37.01 2b69A 343 37.08 c.2.1.2 127974 2p4hX 322 37.20 2nxcA 254 37.46 c.66.1.39 138739 1vl5A 260 38.12 c.66.1.41 108720 2zbwA 335 39.54 1xq6A 253 39.56 c.2.1.2 115829 2z1mA 345 39.96 1vj0A 380 40.10 b.35.1.2,c.2.1.1 100786,100787 2ozpA 345 40.32 1p91A 269 43.47 c.66.1.33 94378 1y8cA 246 43.50 c.66.1.43 116563 2pk3A 321 43.54 1kolA 398 44.35 b.35.1.2,c.2.1.1 77474,77475 1mldA 314 44.54 c.2.1.5,d.162.1.1 30122,42089 1wvgA 359 45.34 c.2.1.2 121339 1kpgA 287 45.41 c.66.1.18 68735 1jw9B 249 46.24 c.111.1.1 67377 1xvaA 292 46.52 c.66.1.5 34183 1c1dA 355 46.77 c.2.1.7,c.58.1.1 30270,33918 2bllA 345 47.28 c.2.1.2 128733 1wznA 252 47.60 c.66.1.43 121525 1xtpA 254 48.63 c.66.1.42 116031 2j3hA 345 49.02 1xg5A 279 49.25 c.2.1.2 115277 2hcyA 347 49.46 1rkxA 357 49.79 c.2.1.2 97631 1l1eA 287 50.06 c.66.1.18 73454 1f8fA 371 51.48 b.35.1.2,c.2.1.1 83246,83247 2ex4A 241 52.19 c.66.1.42 132516 1yzhA 214 52.70 c.66.1.53 124277 2gv8A 447 52.74 c.3.1.5,c.3.1.5 135759,135760 1ebfA 358 52.78 c.2.1.3,d.81.1.2 30033,39948 1xxlA 239 54.22 c.66.1.41 116203 2r3sA 335 55.76 2d8aA 348 55.98 1o89A 345 56.69 b.35.1.2,c.2.1.1 92644,92645 3bxoA 239 57.20 2a35A 215 57.52 c.2.1.2 126072 2eihA 343 57.80 1gteA 1025 58.17 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 3cggA 195 58.65 2q46A 253 58.76 c.2.1.2 139825 2cduA 452 59.67 1qamA 244 61.34 c.66.1.24 34220 2hrzA 342 61.54 1zq9A 285 62.85 c.66.1.24 125505 1trb 320 63.29 2bzgA 232 63.33 c.66.1.36 129559 2gb4A 252 63.50 1zmdA 474 63.77 1yovA 537 66.90 c.111.1.2 123785 2p8jA 209 67.48 1uirA 314 67.58 c.66.1.17 99429 1q1rA 431 67.60 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2r9zA 463 67.77 1duvG 333 68.20 c.78.1.1,c.78.1.1 35228,35229 2aotA 292 68.66 c.66.1.19 127098 1i9gA 280 69.47 c.66.1.13 62090 1y9aA 360 69.53 2yqzA 263 69.86 1zk7A 467 71.22 2b9eA 303 72.07 c.66.1.38 128124 1pl8A 356 72.58 b.35.1.2,c.2.1.1 94878,94879 2cdcA 366 73.06 4uagA 437 73.18 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1dl5A 317 73.42 c.66.1.7,d.197.1.1 64720,64721 3grsA 478 73.53 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1trbA 320 73.75 c.3.1.5,c.3.1.5 30529,30530 2gptA 523 74.38 1im8A 244 75.52 c.66.1.14 66212 2v3aA 384 76.47 1p0fA 373 77.07 b.35.1.2,c.2.1.1 87642,87643 1n8kA 374 77.32 b.35.1.2,c.2.1.1 80298,80299 1zbqA 327 77.42 c.2.1.2 124862 2cmgA 262 78.29 1fp1D 372 79.90 a.4.5.29,c.66.1.12 59939,59940 2ouiA 360 80.19 2gdzA 267 80.30 c.2.1.2 135043 2gpyA 233 80.31 1lvlA 458 80.33 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2gh1A 301 80.55 c.66.1.49 135170 1ps9A 671 80.99 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1bdmA 327 81.09 c.2.1.5,d.162.1.1 30137,42104 2o57A 297 81.86 2i6gA 199 83.21 c.66.1.44 137096 1hyeA 313 84.16 c.2.1.5,d.162.1.1 61400,61401 1b6rA 355 84.17 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1y0pA 571 84.28 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1l3iA 192 84.57 c.66.1.22 77676 2q0lA 311 84.81 2fcaA 213 85.35 c.66.1.53 133262 1y7tA 327 85.48 c.2.1.5,d.162.1.1 122718,122719 2h6eA 344 87.26 1t2aA 375 87.56 c.2.1.2 99078 1zmoA 244 87.57 1udcA 338 87.88 c.2.1.2 29785 1hyuA 521 88.84 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 3grs 478 89.01 2yvlA 248 89.15 1wmaA 276 89.55 c.2.1.2 121042 1y5mA 276 89.95 c.2.1.2 122645