# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.08764 a.100.1.1,c.2.1.6 113951,113952 2h78A 302 0.1006 2izzA 322 0.1094 2ahrA 259 0.1232 a.100.1.10,c.2.1.6 126775,126776 1yb4A 295 0.1313 2pgd 482 0.1426 2rcyA 262 0.1467 2p4qA 497 0.1506 1yqgA 263 0.1537 2pgdA 482 0.1812 a.100.1.1,c.2.1.6 18778,30190 1np3A 338 0.2084 a.100.1.2,c.2.1.6 85946,85947 2cvzA 289 0.2093 a.100.1.1,c.2.1.6 130890,130891 2ew2A 316 0.2097 3c24A 286 0.2171 2graA 277 0.2354 2f1kA 279 0.2414 a.100.1.12,c.2.1.6 132772,132773 2dpoA 319 0.2448 1evyA 366 0.2710 a.100.1.6,c.2.1.6 18811,30215 2g5cA 281 0.2815 a.100.1.12,c.2.1.6 134646,134647 1bg6A 359 0.3269 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 0.3445 a.100.1.7,c.2.1.6 68857,68858 1f0yA 302 0.3685 a.100.1.3,c.2.1.6 18793,30197 1x0vA 354 0.3911 2pv7A 298 0.3929 1yrlA 491 0.4178 1txgA 335 0.5480 a.100.1.6,c.2.1.6 112775,112776 1bg6 359 0.5508 1zcjA 463 0.5561 2qytA 317 0.5690 1jayA 212 0.7532 c.2.1.6 66478 1z82A 335 0.8100 2o3jA 481 0.8406 1zejA 293 0.8580 1i36A 264 0.9468 a.100.1.8,c.2.1.6 71108,71109 2i76A 276 1.116 1dliA 402 1.188 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 1.247 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1qmgA 524 1.251 a.100.1.2,c.2.1.6 18785,30182 1mv8A 436 1.291 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1gdhA 320 2.764 c.2.1.4,c.23.12.1 30095,31355 1qv9A 283 2.797 c.127.1.1 96356 1mx3A 347 2.941 c.2.1.4,c.23.12.1 79638,79639 1ygyA 529 3.015 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2axqA 467 3.072 1dxy 333 3.260 1xdwA 331 3.485 2gcgA 330 3.688 2dbqA 334 3.730 2fssA 365 3.946 1dxyA 333 4.173 c.2.1.4,c.23.12.1 30094,31354 1li4A 432 4.266 c.2.1.4,c.23.12.3 84616,84617 2pi1A 334 4.274 2d0iA 333 4.488 1x7dA 350 4.499 c.2.1.13 114927 1j4aA 333 4.644 c.2.1.4,c.23.12.1 71502,71503 1wwkA 307 4.722 2eklA 313 5.194 2nacA 393 5.207 c.2.1.4,c.23.12.1 30088,31348 2g76A 335 5.423 2ewdA 317 5.436 2o4cA 380 5.643 1qp8A 303 5.717 c.2.1.4,c.23.12.1 30092,31352 2j6iA 364 5.954 1omoA 322 5.958 c.2.1.13 104017 1pjcA 361 6.075 c.2.1.4,c.23.12.2 30101,31361 1sc6A 404 6.882 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2cukA 311 7.065 1lldA 319 7.069 c.2.1.5,d.162.1.1 30177,42144 1v8bA 479 7.195 c.2.1.4,c.23.12.3 113564,113565 2vojA 371 7.209 2vhxA 377 7.796 1ff9A 450 7.980 c.2.1.3,d.81.1.2 30039,39954 1gpjA 404 8.356 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1hyhA 309 8.815 c.2.1.5,d.162.1.1 30150,42117 1l7dA 384 9.019 c.2.1.4,c.23.12.2 77774,77775 1uxjA 309 9.106 c.2.1.5,d.162.1.1 108112,108113 2b0jA 358 9.259 a.100.1.11,c.2.1.6 127639,127640 1pzgA 331 9.571 c.2.1.5,d.162.1.1 95425,95426 1guzA 310 9.907 c.2.1.5,d.162.1.1 65586,65587 2o4uX 334 10.01 2q4eA 362 10.38 1t2dA 322 10.55 c.2.1.5,d.162.1.1 99084,99085 6ldhA 329 10.79 c.2.1.5,d.162.1.1 30161,42128 3ceaA 346 11.03 2ho3A 325 11.22 2p2sA 336 11.48 2nvwA 479 11.83 c.2.1.3,d.81.1.5 138665,138666 2g17A 337 12.31 c.2.1.3,d.81.1.1 134512,134513 1lehA 364 12.81 c.2.1.7,c.58.1.1 30268,33916 1f06A 320 13.03 c.2.1.3,d.81.1.3 59556,59557 1ez4A 318 13.11 c.2.1.5,d.162.1.1 64917,64918 1tltA 319 13.22 c.2.1.3,d.81.1.5 107135,107136 1a5zA 319 13.35 c.2.1.5,d.162.1.1 30181,42148 2glxA 332 13.44 2i6tA 303 13.91 2r6jA 318 13.92 1nvmB 312 14.09 c.2.1.3,d.81.1.1 86251,86252 2hk9A 275 14.93 2ejwA 332 15.06 1u8xX 472 15.23 c.2.1.5,d.162.1.2 107741,107742 1x13A 401 15.50 1drw 273 16.45 1p77A 272 17.02 c.2.1.7,c.58.1.5 94214,94215 1h6dA 433 17.20 c.2.1.3,d.81.1.5 65656,65657 2ixaA 444 17.77 2eggA 297 17.82 3bioA 304 18.06 2dc1A 236 18.12 3c1aA 315 18.27 2v7pA 310 18.44 2hjsA 340 18.55 c.2.1.3,d.81.1.1 136547,136548 1xeaA 323 18.68 c.2.1.3,d.81.1.5 109572,109573 1rydA 387 20.50 c.2.1.3,d.81.1.5 118801,118802 1luaA 287 20.73 c.2.1.7,c.58.1.4 78216,78217 1nytA 271 21.16 c.2.1.7,c.58.1.5 86417,86418 1hdoA 206 21.94 c.2.1.2 60965 2bllA 345 22.01 c.2.1.2 128733 1zh8A 340 22.28 c.2.1.3,d.81.1.5 125077,125078 1z7bA 358 22.41 c.2.1.2 124599 2q49A 359 22.56 c.2.1.3,d.81.1.1 139831,139832 2ph5A 480 22.87 2nloA 302 23.37 1vknA 351 23.41 c.2.1.3,d.81.1.1 108676,108677 1obbA 480 24.63 c.2.1.5,d.162.1.2 86760,86761 2gn4A 344 25.83 2gasA 307 25.89 1lssA 140 26.13 c.2.1.9 74246 1y1pA 342 26.13 c.2.1.2 122550 1drwA 273 26.33 c.2.1.3,d.81.1.3 30057,39972 2pzmA 330 26.38 1xgkA 352 27.60 c.2.1.2 115286 2nqtA 352 28.23 1sb8A 352 28.53 c.2.1.2 105410 2c29D 337 28.55 2r00A 336 29.39 2exxA 306 29.50 2gz1A 366 31.24 c.2.1.3,d.81.1.1 135887,135888 1up7A 417 33.09 c.2.1.5,d.162.1.2 113374,113375 1c1dA 355 34.13 c.2.1.7,c.58.1.1 30270,33918 1j5pA 253 35.34 d.81.1.3,c.2.1.3 71577,83092 2bkaA 242 36.06 c.2.1.2 128666 2d5cA 263 38.16 1vi2A 300 40.46 c.2.1.7,c.58.1.5 100726,100727 1ys4A 354 40.61 2q1sA 377 40.93 1wvgA 359 41.62 c.2.1.2 121339 1lsuA 147 41.82 c.2.1.9 74250 1vl5A 260 45.03 c.66.1.41 108720 1nvtA 287 45.14 c.2.1.7,c.58.1.5 86270,86271 2a35A 215 45.43 c.2.1.2 126072 1vjtA 483 45.64 c.2.1.5,d.162.1.2 100833,100834 2b69A 343 46.93 c.2.1.2 127974 2p4hX 322 47.11 1s6yA 450 47.83 c.2.1.5,d.162.1.2 105314,105315 1o6zA 303 48.81 c.2.1.5,d.162.1.1 81107,81108 2q46A 253 49.20 c.2.1.2 139825 2cf5A 357 49.20 2hmvA 144 49.46 c.2.1.9 136615 2aefA 234 49.52 2g1uA 155 49.69 2hrzA 342 50.73 2z1mA 345 51.11 2p5yA 311 52.95 1yqdA 366 53.06 1npyA 271 53.08 c.2.1.7,c.58.1.5 85995,85996 1rkxA 357 53.37 c.2.1.2 97631 1lc0A 294 54.10 c.2.1.3,d.81.1.4 73823,73824 2czcA 334 55.29 d.81.1.1 131044 1nhpA 447 56.00 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1xq6A 253 57.57 c.2.1.2 115829 1xu9A 286 59.05 c.2.1.2 116052 2yyyA 343 59.63 1im8A 244 60.18 c.66.1.14 66212 2fk8A 318 62.19 c.66.1.18 133648 1b7gO 340 62.33 c.2.1.3,d.81.1.1 29992,39907 2cmd 312 63.84 2pk3A 321 64.06 1l3iA 192 64.81 c.66.1.22 77676 2j3hA 345 65.95 2c5aA 379 67.73 c.2.1.2 129894 1nhsA 447 67.77 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1yxmA 303 67.81 c.2.1.2 124192 1xtpA 254 68.05 c.66.1.42 116031 2o7sA 523 68.19 1ve3A 227 68.27 c.66.1.43 120010 2cduA 452 68.91 3c8mA 331 69.59 1fl2A 310 70.31 c.3.1.5,c.3.1.5 59869,59870 1uufA 369 70.35 b.35.1.2,c.2.1.1 100006,100007 1t2aA 375 70.68 c.2.1.2 99078 3cc8A 230 71.02 2avdA 219 71.94 c.66.1.1 127377 2r3sA 335 72.10 2b9eA 303 72.47 c.66.1.38 128124 3bxoA 239 72.85 1q1rA 431 73.19 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2ip2A 334 74.06 1n7hA 381 74.34 c.2.1.2 80250 1l1eA 287 75.15 c.66.1.18 73454 2ozpA 345 76.66 3cggA 195 76.94 1yqzA 438 77.00 2gh1A 301 77.13 c.66.1.49 135170 1ml4A 308 78.86 c.78.1.1,c.78.1.1 79255,79256 2zbwA 335 78.87 1othA 321 79.44 c.78.1.1,c.78.1.1 35260,35261 1id1A 153 79.91 c.2.1.9 62286 1kpgA 287 80.00 c.66.1.18 68735 1fp1D 372 80.61 a.4.5.29,c.66.1.12 59939,59940 2cmdA 312 80.64 c.2.1.5,d.162.1.1 30135,42102 2p8jA 209 81.04 2ozvA 260 81.55 2gv8A 447 81.70 c.3.1.5,c.3.1.5 135759,135760 1t4bA 367 82.61 c.2.1.3,d.81.1.1 106406,106407 1i2cA 404 83.13 c.2.1.2 83666 2yxeA 215 83.47 1zmoA 244 84.26 1oc2A 348 85.44 c.2.1.2 92765 1dl5A 317 85.57 c.66.1.7,d.197.1.1 64720,64721 2nxcA 254 86.26 c.66.1.39 138739 2dwcA 433 86.54 1udcA 338 86.57 c.2.1.2 29785 1ri5A 298 86.86 c.66.1.34 97502 1ek6A 348 86.97 c.2.1.2 29800 1bgvA 449 87.72 c.2.1.7,c.58.1.1 30217,33865 1ydeA 270 88.07 c.2.1.2 122980 1g8sA 230 88.35 c.66.1.3 90507 1sbyA 254 89.16 c.2.1.2 118930 1trbA 320 89.97 c.3.1.5,c.3.1.5 30529,30530