# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.06982 a.100.1.1,c.2.1.6 113951,113952 1yb4A 295 0.09691 2h78A 302 0.09734 2izzA 322 0.1006 2p4qA 497 0.1101 2ahrA 259 0.1108 a.100.1.10,c.2.1.6 126775,126776 2pgd 482 0.1177 2pgdA 482 0.1180 a.100.1.1,c.2.1.6 18778,30190 1yqgA 263 0.1268 1np3A 338 0.1680 a.100.1.2,c.2.1.6 85946,85947 2dpoA 319 0.1691 2cvzA 289 0.1696 a.100.1.1,c.2.1.6 130890,130891 2rcyA 262 0.1787 2f1kA 279 0.2004 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.2190 1bg6A 359 0.2212 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 0.2378 a.100.1.7,c.2.1.6 68857,68858 2ew2A 316 0.2457 2graA 277 0.2492 2g5cA 281 0.2855 a.100.1.12,c.2.1.6 134646,134647 1f0yA 302 0.2920 a.100.1.3,c.2.1.6 18793,30197 1yrlA 491 0.2957 1x0vA 354 0.3051 1evyA 366 0.3630 a.100.1.6,c.2.1.6 18811,30215 2pv7A 298 0.3635 1zcjA 463 0.3839 1txgA 335 0.4558 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 0.4856 a.100.1.2,c.2.1.6 18785,30182 1bg6 359 0.5037 2qytA 317 0.6208 1z82A 335 0.6804 2i76A 276 0.7317 1zejA 293 0.7413 1i36A 264 0.8859 a.100.1.8,c.2.1.6 71108,71109 1mv8A 436 0.9064 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2o3jA 481 1.025 1jayA 212 1.027 c.2.1.6 66478 1dljA 402 1.029 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 1.183 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1qv9A 283 1.491 c.127.1.1 96356 2axqA 467 2.980 1ygyA 529 3.166 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2fssA 365 3.322 1dxy 333 3.348 2j6iA 364 3.382 1gdhA 320 3.540 c.2.1.4,c.23.12.1 30095,31355 1mx3A 347 3.732 c.2.1.4,c.23.12.1 79638,79639 2gcgA 330 3.843 2eklA 313 4.014 2nacA 393 4.056 c.2.1.4,c.23.12.1 30088,31348 1xdwA 331 4.167 1dxyA 333 4.392 c.2.1.4,c.23.12.1 30094,31354 2g76A 335 4.404 2dbqA 334 4.681 1wwkA 307 4.731 1x7dA 350 4.733 c.2.1.13 114927 2pi1A 334 4.837 1li4A 432 5.088 c.2.1.4,c.23.12.3 84616,84617 1j4aA 333 5.102 c.2.1.4,c.23.12.1 71502,71503 1pjcA 361 5.304 c.2.1.4,c.23.12.2 30101,31361 2o4cA 380 5.560 2d0iA 333 5.587 1omoA 322 5.602 c.2.1.13 104017 2ewdA 317 6.039 2b0jA 358 6.461 a.100.1.11,c.2.1.6 127639,127640 1gpjA 404 6.493 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2vojA 371 6.785 1qp8A 303 7.223 c.2.1.4,c.23.12.1 30092,31352 1v8bA 479 7.303 c.2.1.4,c.23.12.3 113564,113565 1ff9A 450 7.445 c.2.1.3,d.81.1.2 30039,39954 2o4uX 334 8.512 1lldA 319 8.588 c.2.1.5,d.162.1.1 30177,42144 1pzgA 331 8.670 c.2.1.5,d.162.1.1 95425,95426 1sc6A 404 8.807 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1f06A 320 9.181 c.2.1.3,d.81.1.3 59556,59557 1hyhA 309 9.637 c.2.1.5,d.162.1.1 30150,42117 2p2sA 336 9.657 1uxjA 309 9.813 c.2.1.5,d.162.1.1 108112,108113 6ldhA 329 10.06 c.2.1.5,d.162.1.1 30161,42128 2vhxA 377 10.42 2q4eA 362 10.49 1t2dA 322 10.64 c.2.1.5,d.162.1.1 99084,99085 1p77A 272 10.79 c.2.1.7,c.58.1.5 94214,94215 2cukA 311 10.85 1tltA 319 10.98 c.2.1.3,d.81.1.5 107135,107136 2hk9A 275 11.26 2i6tA 303 11.30 3c1aA 315 11.33 2eggA 297 11.59 2ho3A 325 11.64 1u8xX 472 11.78 c.2.1.5,d.162.1.2 107741,107742 1guzA 310 12.47 c.2.1.5,d.162.1.1 65586,65587 1nvmB 312 12.51 c.2.1.3,d.81.1.1 86251,86252 1lehA 364 12.69 c.2.1.7,c.58.1.1 30268,33916 2nvwA 479 12.69 c.2.1.3,d.81.1.5 138665,138666 1l7dA 384 13.83 c.2.1.4,c.23.12.2 77774,77775 1nytA 271 14.22 c.2.1.7,c.58.1.5 86417,86418 1a5zA 319 14.40 c.2.1.5,d.162.1.1 30181,42148 3ceaA 346 14.41 1ez4A 318 14.59 c.2.1.5,d.162.1.1 64917,64918 1x13A 401 15.78 1h6dA 433 16.66 c.2.1.3,d.81.1.5 65656,65657 2v7pA 310 16.86 2nloA 302 16.87 2glxA 332 16.93 2dc1A 236 17.26 1y1pA 342 17.31 c.2.1.2 122550 1luaA 287 17.57 c.2.1.7,c.58.1.4 78216,78217 1lssA 140 17.57 c.2.1.9 74246 2r6jA 318 17.71 3bioA 304 17.80 1rydA 387 19.29 c.2.1.3,d.81.1.5 118801,118802 2bllA 345 19.38 c.2.1.2 128733 1drw 273 19.79 1xeaA 323 20.49 c.2.1.3,d.81.1.5 109572,109573 2hjsA 340 21.00 c.2.1.3,d.81.1.1 136547,136548 1zh8A 340 21.06 c.2.1.3,d.81.1.5 125077,125078 2d5cA 263 21.58 1sb8A 352 21.77 c.2.1.2 105410 2g17A 337 22.17 c.2.1.3,d.81.1.1 134512,134513 1hdoA 206 22.56 c.2.1.2 60965 1vknA 351 23.80 c.2.1.3,d.81.1.1 108676,108677 1j5pA 253 24.34 d.81.1.3,c.2.1.3 71577,83092 1vi2A 300 24.67 c.2.1.7,c.58.1.5 100726,100727 1nvtA 287 24.76 c.2.1.7,c.58.1.5 86270,86271 1lsuA 147 25.25 c.2.1.9 74250 2hmvA 144 25.60 c.2.1.9 136615 2ixaA 444 26.08 1z7bA 358 26.13 c.2.1.2 124599 2ejwA 332 26.14 2gz1A 366 28.98 c.2.1.3,d.81.1.1 135887,135888 2aefA 234 29.14 1c1dA 355 29.40 c.2.1.7,c.58.1.1 30270,33918 1drwA 273 30.17 c.2.1.3,d.81.1.3 30057,39972 2q49A 359 30.19 c.2.1.3,d.81.1.1 139831,139832 2r00A 336 30.62 1up7A 417 30.87 c.2.1.5,d.162.1.2 113374,113375 1vjtA 483 31.95 c.2.1.5,d.162.1.2 100833,100834 2gn4A 344 34.34 1yqdA 366 35.63 2nqtA 352 37.02 2ph5A 480 38.11 2q1sA 377 38.19 2exxA 306 38.34 1obbA 480 39.66 c.2.1.5,d.162.1.2 86760,86761 1y81A 138 39.87 c.2.1.8 122731 1npyA 271 40.15 c.2.1.7,c.58.1.5 85995,85996 2c29D 337 41.40 1fl2A 310 42.06 c.3.1.5,c.3.1.5 59869,59870 2bkaA 242 42.11 c.2.1.2 128666 1lc0A 294 42.14 c.2.1.3,d.81.1.4 73823,73824 1s6yA 450 42.50 c.2.1.5,d.162.1.2 105314,105315 1xgkA 352 43.28 c.2.1.2 115286 3c8mA 331 44.09 2pzmA 330 44.36 2fk8A 318 48.20 c.66.1.18 133648 1wvgA 359 49.97 c.2.1.2 121339 1rkxA 357 50.84 c.2.1.2 97631 1ys4A 354 52.27 1nhpA 447 53.86 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2o7sA 523 54.11 2p5yA 311 54.50 2b69A 343 55.19 c.2.1.2 127974 1iukA 140 55.36 c.2.1.8 83712 2q46A 253 55.40 c.2.1.2 139825 2zbwA 335 55.42 1id1A 153 56.02 c.2.1.9 62286 2d59A 144 56.80 c.2.1.8 131266 1nhsA 447 57.38 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2cf5A 357 58.23 2czcA 334 58.36 d.81.1.1 131044 1wmaA 276 58.54 c.2.1.2 121042 2cduA 452 59.95 1xu9A 286 60.16 c.2.1.2 116052 2cmd 312 60.18 1o6zA 303 60.34 c.2.1.5,d.162.1.1 81107,81108 2gasA 307 60.37 2p4hX 322 62.58 2gdzA 267 62.78 c.2.1.2 135043 2g1uA 155 63.96 1yxmA 303 65.41 c.2.1.2 124192 1xq6A 253 65.75 c.2.1.2 115829 1oc2A 348 66.68 c.2.1.2 92765 2b9eA 303 67.70 c.66.1.38 128124 1l1eA 287 68.67 c.66.1.18 73454 1lvlA 458 74.83 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1ve3A 227 76.22 c.66.1.43 120010 3ckkA 235 77.23 1b7gO 340 77.72 c.2.1.3,d.81.1.1 29992,39907 2z1mA 345 78.00 2yquA 455 78.13 1o89A 345 78.22 b.35.1.2,c.2.1.1 92644,92645 1mldA 314 79.39 c.2.1.5,d.162.1.1 30122,42089 2a4kA 263 80.72 c.2.1.2 126156 1zmoA 244 81.60 1lluA 342 81.72 b.35.1.2,c.2.1.1 91064,91065 1uirA 314 81.75 c.66.1.17 99429 2gb4A 252 82.02 2ozpA 345 82.24 1cydA 244 82.82 c.2.1.2 29825 2hrzA 342 83.37 2cmdA 312 84.36 c.2.1.5,d.162.1.1 30135,42102 1vl5A 260 84.72 c.66.1.41 108720 1xg5A 279 86.75 c.2.1.2 115277 1hyeA 313 88.04 c.2.1.5,d.162.1.1 61400,61401 1uufA 369 89.16 b.35.1.2,c.2.1.1 100006,100007