# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f1kA 279 1.270 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 1.276 a.100.1.12,c.2.1.6 134646,134647 2h78A 302 1.530 1vpdA 299 1.651 a.100.1.1,c.2.1.6 113951,113952 1f0yA 302 1.705 a.100.1.3,c.2.1.6 18793,30197 1yqgA 263 1.936 2dpoA 319 2.108 2ahrA 259 2.363 a.100.1.10,c.2.1.6 126775,126776 2ew2A 316 2.974 2izzA 322 2.982 1np3A 338 3.364 a.100.1.2,c.2.1.6 85946,85947 1yb4A 295 3.752 1yrlA 491 3.755 2cvzA 289 3.957 a.100.1.1,c.2.1.6 130890,130891 3c24A 286 4.075 2rcyA 262 4.222 1bg6A 359 4.469 a.100.1.5,c.2.1.6 18810,30214 1zcjA 463 4.613 2graA 277 5.476 2p4qA 497 5.481 2pv7A 298 5.481 2qytA 317 6.050 1evyA 366 6.299 a.100.1.6,c.2.1.6 18811,30215 1jayA 212 6.337 c.2.1.6 66478 1zejA 293 6.492 1x0vA 354 7.782 1mv8A 436 8.497 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2g76A 335 8.603 1bg6 359 8.713 1gdhA 320 9.747 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 9.874 c.2.1.4,c.23.12.1 30088,31348 1qmgA 524 9.916 a.100.1.2,c.2.1.6 18785,30182 1i36A 264 10.27 a.100.1.8,c.2.1.6 71108,71109 1v8bA 479 11.26 c.2.1.4,c.23.12.3 113564,113565 1z82A 335 11.31 1ygyA 529 12.15 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2pgd 482 12.25 1li4A 432 12.66 c.2.1.4,c.23.12.3 84616,84617 6ldhA 329 13.46 c.2.1.5,d.162.1.1 30161,42128 1nvmB 312 13.47 c.2.1.3,d.81.1.1 86251,86252 2pgdA 482 13.81 a.100.1.1,c.2.1.6 18778,30190 1wwkA 307 14.65 2fssA 365 14.90 1dljA 402 14.97 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2o3jA 481 14.99 1x7dA 350 15.27 c.2.1.13 114927 1mx3A 347 15.38 c.2.1.4,c.23.12.1 79638,79639 2cukA 311 15.78 1lldA 319 16.22 c.2.1.5,d.162.1.1 30177,42144 1txgA 335 16.41 a.100.1.6,c.2.1.6 112775,112776 2v7pA 310 17.09 1t2dA 322 17.23 c.2.1.5,d.162.1.1 99084,99085 1pzgA 331 17.46 c.2.1.5,d.162.1.1 95425,95426 3ceaA 346 17.87 2d0iA 333 18.45 2j6iA 364 18.46 2ewdA 317 18.72 1a5zA 319 19.36 c.2.1.5,d.162.1.1 30181,42148 2dbqA 334 19.37 1ez4A 318 19.57 c.2.1.5,d.162.1.1 64917,64918 1uxjA 309 19.74 c.2.1.5,d.162.1.1 108112,108113 1xdwA 331 20.02 1ks9A 291 20.05 a.100.1.7,c.2.1.6 68857,68858 2i76A 276 20.69 2o4uX 334 20.76 1dliA 402 21.13 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1sc6A 404 21.29 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2axqA 467 21.44 1omoA 322 22.27 c.2.1.13 104017 2pi1A 334 22.44 2eklA 313 22.45 2nvwA 479 23.68 c.2.1.3,d.81.1.5 138665,138666 2yyyA 343 25.04 1qp8A 303 25.19 c.2.1.4,c.23.12.1 30092,31352 2i6tA 303 25.59 1guzA 310 26.42 c.2.1.5,d.162.1.1 65586,65587 2gcgA 330 27.79 2gn4A 344 27.84 1hyhA 309 29.74 c.2.1.5,d.162.1.1 30150,42117 1j4aA 333 32.39 c.2.1.4,c.23.12.1 71502,71503 2o4cA 380 33.49 1l7dA 384 34.67 c.2.1.4,c.23.12.2 77774,77775 2glxA 332 35.26 1s6yA 450 35.70 c.2.1.5,d.162.1.2 105314,105315 1x13A 401 36.86 2q4eA 362 38.06 2exxA 306 38.96 2a4kA 263 39.15 c.2.1.2 126156 1gpjA 404 40.91 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1o6zA 303 41.33 c.2.1.5,d.162.1.1 81107,81108 1h6dA 433 41.47 c.2.1.3,d.81.1.5 65656,65657 2hk9A 275 41.76 1ff9A 450 42.14 c.2.1.3,d.81.1.2 30039,39954 1bdmA 327 42.14 c.2.1.5,d.162.1.1 30137,42104 2vojA 371 42.40 2eggA 297 43.04 1dxy 333 43.47 2d5cA 263 43.54 1obbA 480 44.02 c.2.1.5,d.162.1.2 86760,86761 1pjcA 361 44.26 c.2.1.4,c.23.12.2 30101,31361 1dxyA 333 45.44 c.2.1.4,c.23.12.1 30094,31354 2hjsA 340 45.89 c.2.1.3,d.81.1.1 136547,136548 1zh8A 340 47.06 c.2.1.3,d.81.1.5 125077,125078 1b7gO 340 48.82 c.2.1.3,d.81.1.1 29992,39907 1nytA 271 50.53 c.2.1.7,c.58.1.5 86417,86418 1lehA 364 50.80 c.2.1.7,c.58.1.1 30268,33916 2b0jA 358 50.98 a.100.1.11,c.2.1.6 127639,127640 1q1rA 431 51.89 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1vknA 351 52.26 c.2.1.3,d.81.1.1 108676,108677 1u8xX 472 53.31 c.2.1.5,d.162.1.2 107741,107742 1y7tA 327 53.99 c.2.1.5,d.162.1.1 122718,122719 1xgkA 352 54.00 c.2.1.2 115286 1c1dA 355 55.31 c.2.1.7,c.58.1.1 30270,33918 1up7A 417 56.97 c.2.1.5,d.162.1.2 113374,113375 1yb1A 272 57.15 c.2.1.2 116599 1lluA 342 57.67 b.35.1.2,c.2.1.1 91064,91065 2fk8A 318 57.67 c.66.1.18 133648 2g17A 337 59.70 c.2.1.3,d.81.1.1 134512,134513 2czcA 334 60.75 d.81.1.1 131044 1rydA 387 60.82 c.2.1.3,d.81.1.5 118801,118802 2cmdA 312 61.07 c.2.1.5,d.162.1.1 30135,42102 2r6jA 318 61.68 2yutA 207 61.73 1xeaA 323 63.21 c.2.1.3,d.81.1.5 109572,109573 2ho3A 325 64.20 2nwqA 272 64.37 1y1pA 342 64.67 c.2.1.2 122550 2cmd 312 66.49 1o89A 345 68.06 b.35.1.2,c.2.1.1 92644,92645 1k3tA 359 68.24 c.2.1.3,d.81.1.1 72022,72023 1lssA 140 68.52 c.2.1.9 74246 3cc8A 230 68.70 2cdcA 366 68.98 2vhxA 377 69.07 1u8fO 335 69.44 c.2.1.3,d.81.1.1 119626,119627 1uufA 369 69.80 b.35.1.2,c.2.1.1 100006,100007 2g82A 331 69.85 c.2.1.3,d.81.1.1 134746,134747 1kpgA 287 70.12 c.66.1.18 68735 2dm6A 333 70.53 b.35.1.2,c.2.1.1 131567,131568 2ejwA 332 71.49 2bmaA 470 72.50 1vjtA 483 72.72 c.2.1.5,d.162.1.2 100833,100834 2p4hX 322 72.91 3bkwA 243 73.14 2o8nA 265 75.93 2c29D 337 76.06 1y8qA 346 76.12 3c85A 183 76.44 2h6eA 344 78.82 2gasA 307 79.10 2d8aA 348 79.83 2bgkA 278 80.79 c.2.1.2 128480 1orrA 347 80.93 c.2.1.2 93460 1bgvA 449 82.47 c.2.1.7,c.58.1.1 30217,33865 2r00A 336 82.70 1c0pA 363 83.72 c.4.1.2,d.16.1.3 30647,37934 1bdb 277 84.66 2nxcA 254 84.92 c.66.1.39 138739 1sb8A 352 85.44 c.2.1.2 105410 1bdbA 277 86.11 c.2.1.2 29874 1obfO 335 86.80 c.2.1.3,d.81.1.1 86768,86769 2q49A 359 88.98 c.2.1.3,d.81.1.1 139831,139832 1rm4A 337 89.26 c.2.1.3,d.81.1.1 105000,105001 2p35A 259 89.97