# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 0.000916 2h78A 302 0.000920 2f1kA 279 0.001122 a.100.1.12,c.2.1.6 132772,132773 1vpdA 299 0.001214 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.001396 a.100.1.10,c.2.1.6 126775,126776 2g5cA 281 0.001647 a.100.1.12,c.2.1.6 134646,134647 2izzA 322 0.002059 2p4qA 497 0.002463 1yqgA 263 0.002750 2pgdA 482 0.003082 a.100.1.1,c.2.1.6 18778,30190 1np3A 338 0.003317 a.100.1.2,c.2.1.6 85946,85947 2cvzA 289 0.003475 a.100.1.1,c.2.1.6 130890,130891 2graA 277 0.003545 2pv7A 298 0.004483 3c24A 286 0.005530 2rcyA 262 0.005961 1bg6 359 0.005970 2pgd 482 0.006136 1pgjA 478 0.006171 a.100.1.1,c.2.1.6 18783,30195 1yrlA 491 0.007738 1ks9A 291 0.008740 a.100.1.7,c.2.1.6 68857,68858 2ew2A 316 0.009413 1txgA 335 0.01622 a.100.1.6,c.2.1.6 112775,112776 1zejA 293 0.01935 1evyA 366 0.01981 a.100.1.6,c.2.1.6 18811,30215 2i76A 276 0.02152 1f0yA 302 0.02283 a.100.1.3,c.2.1.6 18793,30197 1qmgA 524 0.03178 a.100.1.2,c.2.1.6 18785,30182 1z82A 335 0.04159 1jayA 212 0.04397 c.2.1.6 66478 1i36A 264 0.04712 a.100.1.8,c.2.1.6 71108,71109 1bg6A 359 0.07289 a.100.1.5,c.2.1.6 18810,30214 1dljA 402 0.08839 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.1007 2o3jA 481 0.1043 1mv8A 436 0.1181 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dliA 402 0.1673 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2dpoA 319 0.2419 1ff9A 450 0.2796 c.2.1.3,d.81.1.2 30039,39954 1gdhA 320 0.3940 c.2.1.4,c.23.12.1 30095,31355 1mx3A 347 0.4069 c.2.1.4,c.23.12.1 79638,79639 2nacA 393 0.4493 c.2.1.4,c.23.12.1 30088,31348 1x0vA 354 0.4730 1tltA 319 0.5547 c.2.1.3,d.81.1.5 107135,107136 2fssA 365 0.5863 2qytA 317 0.6547 1psdA 409 0.6807 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2g76A 335 0.6963 1wwkA 307 0.7238 1xdwA 331 0.7438 1vllA 334 0.7483 c.2.1.13 108834 1d4fA 431 0.8478 c.2.1.4,c.23.12.3 30110,31370 1li4A 432 0.9491 c.2.1.4,c.23.12.3 84616,84617 1j4aA 333 0.9646 c.2.1.4,c.23.12.1 71502,71503 2d0iA 333 1.105 1v8bA 479 1.116 c.2.1.4,c.23.12.3 113564,113565 2dbqA 334 1.227 1u8xX 472 1.343 c.2.1.5,d.162.1.2 107741,107742 1x7dA 350 1.354 c.2.1.13 114927 1dxy 333 1.366 1xwfA 431 1.412 c.2.1.4,c.23.12.3 122392,122393 1qp8A 303 1.431 c.2.1.4,c.23.12.1 30092,31352 2gcgA 330 1.606 1omoA 322 1.607 c.2.1.13 104017 2pi1A 334 1.677 1ygyA 529 1.738 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2o4cA 380 1.832 2j6iA 364 1.843 2eklA 313 1.914 2hk9A 275 2.013 1gpjA 404 2.022 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1uxjA 309 2.098 c.2.1.5,d.162.1.1 108112,108113 1dxyA 333 2.275 c.2.1.4,c.23.12.1 30094,31354 1ur5A 309 2.348 c.2.1.5,d.162.1.1 99807,99808 1pzgA 331 2.486 c.2.1.5,d.162.1.1 95425,95426 1lldA 319 2.647 c.2.1.5,d.162.1.1 30177,42144 1xeaA 323 2.739 c.2.1.3,d.81.1.5 109572,109573 1t2dA 322 2.831 c.2.1.5,d.162.1.1 99084,99085 1sc6A 404 2.907 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3ceaA 346 2.973 2cukA 311 3.131 1s6yA 450 3.224 c.2.1.5,d.162.1.2 105314,105315 1hyhA 309 3.240 c.2.1.5,d.162.1.1 30150,42117 1guzA 310 3.282 c.2.1.5,d.162.1.1 65586,65587 2vhxA 377 3.628 1gcuA 295 3.674 c.2.1.3,d.81.1.4 30063,39978 1ldg 316 3.863 1qv9A 283 4.405 c.127.1.1 96356 2eggA 297 4.412 2axqA 467 4.524 2ewdA 317 4.920 1nytA 271 4.952 c.2.1.7,c.58.1.5 86417,86418 1lssA 140 5.054 c.2.1.9 74246 1hdoA 206 5.189 c.2.1.2 60965 2b0jA 358 5.235 a.100.1.11,c.2.1.6 127639,127640 2glxA 332 5.307 6ldhA 329 5.344 c.2.1.5,d.162.1.1 30161,42128 2g17A 337 5.357 c.2.1.3,d.81.1.1 134512,134513 1vjtA 483 5.633 c.2.1.5,d.162.1.2 100833,100834 1up6A 416 5.783 c.2.1.5,d.162.1.2 107976,107977 1vknA 351 6.211 c.2.1.3,d.81.1.1 108676,108677 1luaA 287 6.264 c.2.1.7,c.58.1.4 78216,78217 2q4eA 362 6.974 1up7A 417 7.206 c.2.1.5,d.162.1.2 113374,113375 1ez4A 318 7.252 c.2.1.5,d.162.1.1 64917,64918 1nvmB 312 7.486 c.2.1.3,d.81.1.1 86251,86252 2p2sA 336 7.755 2nqtA 352 7.862 2i6tA 303 7.863 2r6jA 318 7.881 1f06A 320 8.003 c.2.1.3,d.81.1.3 59556,59557 1qydA 313 8.166 c.2.1.2 96583 1obbA 480 8.224 c.2.1.5,d.162.1.2 86760,86761 1l7dA 384 8.255 c.2.1.4,c.23.12.2 77774,77775 1zh8A 340 8.448 c.2.1.3,d.81.1.5 125077,125078 1lehA 364 8.589 c.2.1.7,c.58.1.1 30268,33916 2hjsA 340 8.738 c.2.1.3,d.81.1.1 136547,136548 2nloA 302 8.997 2v7pA 310 9.077 2g1uA 155 9.166 2vojA 371 9.410 2dc1A 236 9.429 2nvwA 479 9.708 c.2.1.3,d.81.1.5 138665,138666 1ofgA 381 9.731 c.2.1.3,d.81.1.5 30064,39979 3c1aA 315 9.798 2hmvA 144 10.69 c.2.1.9 136615 1c1dA 355 10.75 c.2.1.7,c.58.1.1 30270,33918 1cf2O 337 10.76 c.2.1.3,d.81.1.1 29994,39909 1k6xA 352 11.38 c.2.1.2 68238 1drwA 273 11.40 c.2.1.3,d.81.1.3 30057,39972 2o4uX 334 11.43 2czcA 334 11.60 d.81.1.1 131044 1p77A 272 11.66 c.2.1.7,c.58.1.5 94214,94215 2gasA 307 11.71 2q49A 359 11.74 c.2.1.3,d.81.1.1 139831,139832 2ho3A 325 12.06 1h6dA 433 12.06 c.2.1.3,d.81.1.5 65656,65657 1pjcA 361 12.07 c.2.1.4,c.23.12.2 30101,31361 1npyA 271 12.11 c.2.1.7,c.58.1.5 85995,85996 2gz1A 366 12.47 c.2.1.3,d.81.1.1 135887,135888 2d5cA 263 12.66 2gptA 523 12.86 1lsuA 147 13.15 c.2.1.9 74250 1ys4A 354 13.22 2ixaA 444 13.88 1qycA 308 14.09 c.2.1.2 96581 1xq6A 253 14.32 c.2.1.2 115829 1a5zA 319 14.33 c.2.1.5,d.162.1.1 30181,42148 2r00A 336 14.52 2ozpA 345 15.19 1drw 273 15.36 1rydA 387 16.30 c.2.1.3,d.81.1.5 118801,118802 2ph5A 480 16.53 1j5pA 253 17.13 d.81.1.3,c.2.1.3 71577,83092 2aefA 234 18.60 2o7sA 523 19.23 1nvtA 287 19.74 c.2.1.7,c.58.1.5 86270,86271 2exxA 306 20.36 2nxcA 254 20.87 c.66.1.39 138739 1n7hA 381 21.96 c.2.1.2 80250 2c5aA 379 23.30 c.2.1.2 129894 2cmdA 312 23.78 c.2.1.5,d.162.1.1 30135,42102 1a4iA 301 24.34 c.2.1.7,c.58.1.2 30278,33926 2a4kA 263 24.58 c.2.1.2 126156 1vi2A 300 24.74 c.2.1.7,c.58.1.5 100726,100727 1xgkA 352 25.91 c.2.1.2 115286 3c85A 183 26.67 1t4bA 367 27.77 c.2.1.3,d.81.1.1 106406,106407 1mb4A 370 27.92 c.2.1.3,d.81.1.1 78908,78909 1bdbA 277 28.20 c.2.1.2 29874 2b69A 343 28.28 c.2.1.2 127974 1othA 321 28.86 c.78.1.1,c.78.1.1 35260,35261 1brmA 367 29.08 c.2.1.3,d.81.1.1 30030,39945 1iukA 140 29.65 c.2.1.8 83712 1sb8A 352 29.74 c.2.1.2 105410 2q46A 253 29.75 c.2.1.2 139825 1q7gA 359 30.89 c.2.1.3,d.81.1.2 96038,96039 1k2wA 256 31.41 c.2.1.2 90927 1e6wA 260 33.27 c.2.1.2 59326 1lc0A 294 33.79 c.2.1.3,d.81.1.4 73823,73824 1rkxA 357 34.19 c.2.1.2 97631 2d59A 144 34.82 c.2.1.8 131266 1x13A 401 36.38 2z1mA 345 36.45 1xseA 295 36.77 c.2.1.2 115925 1y1pA 342 37.42 c.2.1.2 122550 1rpnA 335 37.55 c.2.1.2 97708 1bdb 277 37.71 1x7gA 261 37.85 c.2.1.2 114929 2bllA 345 38.72 c.2.1.2 128733 1pwxA 254 38.78 c.2.1.2 95262 2pzmA 330 39.34 1id1A 153 39.59 c.2.1.9 62286 2yyyA 343 40.51 1b16A 254 40.68 c.2.1.2 29875 2gdzA 267 40.85 c.2.1.2 135043 1ydeA 270 41.24 c.2.1.2 122980 1nhp 447 42.51 1o6zA 303 43.50 c.2.1.5,d.162.1.1 81107,81108 2cduA 452 43.50 1z7bA 358 43.52 c.2.1.2 124599 2bkaA 242 43.74 c.2.1.2 128666 1zmtA 254 44.16 c.2.1.2 125363 1u9jA 358 44.21 c.2.1.2 113243 2o23A 265 44.82 c.2.1.2 138884 1fl2A 310 45.04 c.3.1.5,c.3.1.5 59869,59870 2jahA 247 45.24 1xhcA 367 45.40 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1hyuA 521 45.75 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2ph3A 245 45.75 2cfcA 250 45.93 1yb1A 272 46.33 c.2.1.2 116599 1t2aA 375 47.57 c.2.1.2 99078 1w6uA 302 48.98 c.2.1.2 114288 1xel 338 49.62 2r0cA 549 50.38 1b7gO 340 50.91 c.2.1.3,d.81.1.1 29992,39907 1scuA 288 52.40 c.2.1.8,c.23.4.1 30307,31135 1h5qA 265 52.46 c.2.1.2 60643 1hdcA 253 52.64 c.2.1.2 29862 1ek6A 348 53.04 c.2.1.2 29800 1hxhA 253 53.05 c.2.1.2 76725 1y81A 138 53.55 c.2.1.8 122731 1zq9A 285 53.62 c.66.1.24 125505 1udcA 338 53.96 c.2.1.2 29785 1xu9A 286 54.38 c.2.1.2 116052 1trb 320 55.13 3bioA 304 55.40 1xhlA 297 55.98 c.2.1.2 109591 1zk4A 251 56.07 c.2.1.2 125176 1ja9A 274 56.18 c.2.1.2 62817 1q7bA 244 56.26 c.2.1.2 96026 1gesA 450 59.45 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1vm6A 228 59.57 d.81.1.3,c.2.1.3 108877,118631 1zemA 262 59.94 c.2.1.2 124984 1hwxA 501 60.65 c.2.1.7,c.58.1.1 30250,33898 1gtmA 419 60.80 c.2.1.7,c.58.1.1 30223,33871 1y5mA 276 60.90 c.2.1.2 122645 2bgkA 278 61.08 c.2.1.2 128480 1q1rA 431 62.17 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1d7yA 408 62.23 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2c07A 285 62.79 c.2.1.2 129577 1nffA 260 62.99 c.2.1.2 80457 1orrA 347 63.27 c.2.1.2 93460 1pvvA 315 63.47 c.78.1.1,c.78.1.1 95190,95191 1iy8A 267 63.76 c.2.1.2 83774 3c8mA 331 65.04 1yqdA 366 68.72 2a35A 215 70.33 c.2.1.2 126072 2gqwA 408 70.35 1eyzA 392 70.60 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1e7wA 291 70.70 c.2.1.2 59373 1kpgA 287 71.06 c.66.1.18 68735 2nwqA 272 72.54 2pnfA 248 73.33 1nhpA 447 73.70 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1sbyA 254 74.74 c.2.1.2 118930 2p5yA 311 75.87 2csuA 457 76.05 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1r6dA 337 76.39 c.2.1.2 97148 2jfgA 445 76.58 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2gv8A 447 76.84 c.3.1.5,c.3.1.5 135759,135760 3ladA 476 76.98 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2dwcA 433 77.25 1spxA 278 77.27 c.2.1.2 98958 1l3iA 192 78.45 c.66.1.22 77676 1qrrA 394 78.58 c.2.1.2 29824 1wmaA 276 78.70 c.2.1.2 121042 1ml4A 308 79.10 c.78.1.1,c.78.1.1 79255,79256 1vl8A 267 79.61 c.2.1.2 108733 2cmd 312 81.20 1xg5A 279 81.42 c.2.1.2 115277 1kjqA 391 81.71 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2yqzA 263 82.49 1gcoA 261 82.91 c.2.1.2 29884 2cf5A 357 83.27 2ekpA 239 83.39 1geeA 261 83.42 c.2.1.2 90509 1qsgA 265 83.77 c.2.1.2 29935 2c29D 337 83.92 1cydA 244 84.16 c.2.1.2 29825 1gegA 256 84.16 c.2.1.2 29888 1x1tA 260 85.41 c.2.1.2 121597 1mo9A 523 85.66 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2yutA 207 85.85 1mldA 314 86.08 c.2.1.5,d.162.1.1 30122,42089 3bkwA 243 86.15 1ebfA 358 87.48 c.2.1.3,d.81.1.2 30033,39948 2ejwA 332 88.12 1uluA 261 88.28 c.2.1.2 113292 1zmdA 474 88.76 2z5lA 511 88.87