# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 0.002506 2h78A 302 0.003327 2f1kA 279 0.004467 a.100.1.12,c.2.1.6 132772,132773 2ahrA 259 0.004512 a.100.1.10,c.2.1.6 126775,126776 1vpdA 299 0.004958 a.100.1.1,c.2.1.6 113951,113952 2g5cA 281 0.005217 a.100.1.12,c.2.1.6 134646,134647 2p4qA 497 0.005435 2izzA 322 0.005724 2pgdA 482 0.005841 a.100.1.1,c.2.1.6 18778,30190 2cvzA 289 0.007732 a.100.1.1,c.2.1.6 130890,130891 1yqgA 263 0.007819 2pv7A 298 0.008954 1np3A 338 0.009091 a.100.1.2,c.2.1.6 85946,85947 2graA 277 0.009887 3c24A 286 0.01378 1bg6 359 0.01499 1pgjA 478 0.01650 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 0.01668 1yrlA 491 0.01988 1ks9A 291 0.02114 a.100.1.7,c.2.1.6 68857,68858 2rcyA 262 0.02242 2i76A 276 0.02573 1qmgA 524 0.03362 a.100.1.2,c.2.1.6 18785,30182 2ew2A 316 0.03434 1zejA 293 0.03443 1txgA 335 0.03617 a.100.1.6,c.2.1.6 112775,112776 1evyA 366 0.04855 a.100.1.6,c.2.1.6 18811,30215 1jayA 212 0.06695 c.2.1.6 66478 1f0yA 302 0.07246 a.100.1.3,c.2.1.6 18793,30197 1i36A 264 0.09838 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 0.09886 1zcjA 463 0.1342 1dljA 402 0.2085 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1mv8A 436 0.2193 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2o3jA 481 0.2237 1bg6A 359 0.2255 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.2402 1dliA 402 0.3390 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1ff9A 450 0.4989 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.8825 2nacA 393 0.9588 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 1.005 c.2.1.4,c.23.12.1 30095,31355 1tltA 319 1.116 c.2.1.3,d.81.1.5 107135,107136 2j6iA 364 1.155 2fssA 365 1.188 2g76A 335 1.243 1psdA 409 1.487 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1mx3A 347 1.502 c.2.1.4,c.23.12.1 79638,79639 1xdwA 331 1.583 1vllA 334 1.633 c.2.1.13 108834 1j4aA 333 1.638 c.2.1.4,c.23.12.1 71502,71503 1wwkA 307 1.675 1u8xX 472 1.944 c.2.1.5,d.162.1.2 107741,107742 2qytA 317 1.970 1x7dA 350 2.117 c.2.1.13 114927 1s6yA 450 2.146 c.2.1.5,d.162.1.2 105314,105315 1gpjA 404 2.366 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2d0iA 333 2.649 1omoA 322 2.758 c.2.1.13 104017 1qp8A 303 2.829 c.2.1.4,c.23.12.1 30092,31352 1pzgA 331 2.836 c.2.1.5,d.162.1.1 95425,95426 1ldg 316 2.848 1dxy 333 2.919 2gcgA 330 2.959 2pi1A 334 3.064 1ygyA 529 3.088 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1t2dA 322 3.167 c.2.1.5,d.162.1.1 99084,99085 2eklA 313 3.290 2o4cA 380 3.293 2hk9A 275 3.456 1xeaA 323 3.562 c.2.1.3,d.81.1.5 109572,109573 1qv9A 283 3.669 c.127.1.1 96356 1lssA 140 3.731 c.2.1.9 74246 1uxjA 309 3.753 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 3.924 c.2.1.5,d.162.1.1 99807,99808 1lldA 319 4.070 c.2.1.5,d.162.1.1 30177,42144 1dxyA 333 4.429 c.2.1.4,c.23.12.1 30094,31354 2dbqA 334 4.475 1gcuA 295 4.543 c.2.1.3,d.81.1.4 30063,39978 1d4fA 431 4.744 c.2.1.4,c.23.12.3 30110,31370 1xwfA 431 4.913 c.2.1.4,c.23.12.3 122392,122393 2eggA 297 5.300 2b0jA 358 5.504 a.100.1.11,c.2.1.6 127639,127640 1li4A 432 5.678 c.2.1.4,c.23.12.3 84616,84617 1nytA 271 5.757 c.2.1.7,c.58.1.5 86417,86418 2cukA 311 5.768 1guzA 310 6.311 c.2.1.5,d.162.1.1 65586,65587 1sc6A 404 6.588 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3c1aA 315 6.783 2i6tA 303 6.807 1up6A 416 6.816 c.2.1.5,d.162.1.2 107976,107977 1up7A 417 6.945 c.2.1.5,d.162.1.2 113374,113375 2vhxA 377 7.084 3ceaA 346 7.388 2dc1A 236 7.422 1luaA 287 7.537 c.2.1.7,c.58.1.4 78216,78217 1obbA 480 7.613 c.2.1.5,d.162.1.2 86760,86761 2glxA 332 8.056 2ewdA 317 8.059 2d5cA 263 8.165 1vknA 351 8.328 c.2.1.3,d.81.1.1 108676,108677 1v8bA 479 8.679 c.2.1.4,c.23.12.3 113564,113565 2p2sA 336 8.694 2hmvA 144 8.728 c.2.1.9 136615 1zh8A 340 9.191 c.2.1.3,d.81.1.5 125077,125078 2q4eA 362 9.297 2hjsA 340 9.433 c.2.1.3,d.81.1.1 136547,136548 1hyhA 309 9.544 c.2.1.5,d.162.1.1 30150,42117 1lsuA 147 9.610 c.2.1.9 74250 2nloA 302 9.625 6ldhA 329 9.809 c.2.1.5,d.162.1.1 30161,42128 1lehA 364 9.826 c.2.1.7,c.58.1.1 30268,33916 1vjtA 483 9.921 c.2.1.5,d.162.1.2 100833,100834 1j5pA 253 10.02 d.81.1.3,c.2.1.3 71577,83092 1npyA 271 10.27 c.2.1.7,c.58.1.5 85995,85996 1pjcA 361 10.78 c.2.1.4,c.23.12.2 30101,31361 1p77A 272 11.18 c.2.1.7,c.58.1.5 94214,94215 1hdoA 206 11.46 c.2.1.2 60965 1f06A 320 12.18 c.2.1.3,d.81.1.3 59556,59557 2gptA 523 12.30 2nvwA 479 12.36 c.2.1.3,d.81.1.5 138665,138666 2v7pA 310 12.45 1nvmB 312 12.63 c.2.1.3,d.81.1.1 86251,86252 2g1uA 155 13.49 1nvtA 287 13.57 c.2.1.7,c.58.1.5 86270,86271 1c1dA 355 13.62 c.2.1.7,c.58.1.1 30270,33918 1a5zA 319 13.91 c.2.1.5,d.162.1.1 30181,42148 1ez4A 318 14.19 c.2.1.5,d.162.1.1 64917,64918 2aefA 234 14.28 2nqtA 352 14.60 2g17A 337 14.96 c.2.1.3,d.81.1.1 134512,134513 2o7sA 523 15.52 2gz1A 366 15.58 c.2.1.3,d.81.1.1 135887,135888 2o4uX 334 16.44 1ys4A 354 17.86 1vi2A 300 18.08 c.2.1.7,c.58.1.5 100726,100727 1ofgA 381 18.08 c.2.1.3,d.81.1.5 30064,39979 2r6jA 318 18.60 1rydA 387 19.21 c.2.1.3,d.81.1.5 118801,118802 2axqA 467 19.95 2ho3A 325 20.52 1h6dA 433 20.91 c.2.1.3,d.81.1.5 65656,65657 1drwA 273 21.21 c.2.1.3,d.81.1.3 30057,39972 2vojA 371 21.65 1qydA 313 21.71 c.2.1.2 96583 1l7dA 384 21.86 c.2.1.4,c.23.12.2 77774,77775 1xq6A 253 22.14 c.2.1.2 115829 2r00A 336 22.25 2q49A 359 22.44 c.2.1.3,d.81.1.1 139831,139832 2d59A 144 22.55 c.2.1.8 131266 2czcA 334 23.45 d.81.1.1 131044 1k6xA 352 24.77 c.2.1.2 68238 1cf2O 337 25.43 c.2.1.3,d.81.1.1 29994,39909 1iukA 140 25.90 c.2.1.8 83712 1drw 273 27.08 2ixaA 444 27.43 1a4iA 301 29.63 c.2.1.7,c.58.1.2 30278,33926 3c85A 183 31.32 2gasA 307 31.75 2ozpA 345 35.50 2exxA 306 36.40 2cmdA 312 37.17 c.2.1.5,d.162.1.1 30135,42102 1id1A 153 37.47 c.2.1.9 62286 2ph5A 480 37.75 2q46A 253 37.87 c.2.1.2 139825 1brmA 367 37.97 c.2.1.3,d.81.1.1 30030,39945 1y81A 138 39.22 c.2.1.8 122731 1rkxA 357 40.20 c.2.1.2 97631 3c8mA 331 41.39 1lc0A 294 41.63 c.2.1.3,d.81.1.4 73823,73824 1mb4A 370 42.85 c.2.1.3,d.81.1.1 78908,78909 1xgkA 352 44.09 c.2.1.2 115286 1trb 320 45.86 3bioA 304 46.09 1x13A 401 46.60 2z1mA 345 48.46 1hwxA 501 50.42 c.2.1.7,c.58.1.1 30250,33898 1k2wA 256 51.23 c.2.1.2 90927 1bdbA 277 51.81 c.2.1.2 29874 2a4kA 263 52.06 c.2.1.2 126156 1y1pA 342 53.06 c.2.1.2 122550 2nxcA 254 54.72 c.66.1.39 138739 1fl2A 310 54.88 c.3.1.5,c.3.1.5 59869,59870 1qycA 308 55.66 c.2.1.2 96581 2b69A 343 57.32 c.2.1.2 127974 2p5yA 311 57.68 2bkaA 242 58.17 c.2.1.2 128666 1t4bA 367 58.49 c.2.1.3,d.81.1.1 106406,106407 2ejwA 332 58.83 1scuA 288 59.82 c.2.1.8,c.23.4.1 30307,31135 1gtmA 419 60.47 c.2.1.7,c.58.1.1 30223,33871 1nhp 447 65.53 1q7gA 359 65.76 c.2.1.3,d.81.1.2 96038,96039 1d7yA 408 66.64 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1yqdA 366 69.04 1yqzA 438 70.43 1xel 338 71.30 1gesA 450 71.45 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2o23A 265 72.15 c.2.1.2 138884 1pwxA 254 73.59 c.2.1.2 95262 1e6wA 260 73.73 c.2.1.2 59326 1x7gA 261 74.24 c.2.1.2 114929 1othA 321 74.73 c.78.1.1,c.78.1.1 35260,35261 1hxhA 253 76.00 c.2.1.2 76725 2p4hX 322 76.64 1sb8A 352 77.04 c.2.1.2 105410 2c5aA 379 77.62 c.2.1.2 129894 2jfgA 445 77.73 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2jahA 247 78.37 2v3aA 384 79.65 1hdcA 253 79.75 c.2.1.2 29862 1b16A 254 79.90 c.2.1.2 29875 1wmaA 276 80.62 c.2.1.2 121042 1b7gO 340 81.62 c.2.1.3,d.81.1.1 29992,39907 1zmtA 254 83.23 c.2.1.2 125363 1xseA 295 83.93 c.2.1.2 115925 2gdzA 267 84.45 c.2.1.2 135043 1nffA 260 84.57 c.2.1.2 80457 1b26A 416 84.65 c.2.1.7,c.58.1.1 30232,33880 2cduA 452 85.37 2csuA 457 86.40 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1b3bA 415 89.15 c.2.1.7,c.58.1.1 30244,33892 1t2aA 375 89.41 c.2.1.2 99078 1n7hA 381 89.48 c.2.1.2 80250 2gqwA 408 89.79 1nhpA 447 89.98 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196