# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h78A 302 0.9593 1vpdA 299 1.023 a.100.1.1,c.2.1.6 113951,113952 2g5cA 281 1.137 a.100.1.12,c.2.1.6 134646,134647 2f1kA 279 1.416 a.100.1.12,c.2.1.6 132772,132773 1yb4A 295 1.527 2ahrA 259 1.618 a.100.1.10,c.2.1.6 126775,126776 1f0yA 302 2.083 a.100.1.3,c.2.1.6 18793,30197 1yqgA 263 2.132 2cvzA 289 2.806 a.100.1.1,c.2.1.6 130890,130891 1bg6 359 3.153 2izzA 322 3.155 3c24A 286 3.281 1np3A 338 3.417 a.100.1.2,c.2.1.6 85946,85947 2rcyA 262 3.741 2ew2A 316 4.168 2pv7A 298 4.200 1zejA 293 4.250 1yrlA 491 4.370 2p4qA 497 4.473 2dpoA 319 4.735 1zcjA 463 5.247 2graA 277 5.400 1pgjA 478 5.759 a.100.1.1,c.2.1.6 18783,30195 1mv8A 436 6.182 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1qmgA 524 6.323 a.100.1.2,c.2.1.6 18785,30182 1jayA 212 6.495 c.2.1.6 66478 1dljA 402 6.507 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1bg6A 359 6.660 a.100.1.5,c.2.1.6 18810,30214 1i36A 264 7.038 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 7.198 2i76A 276 7.270 1evyA 366 8.521 a.100.1.6,c.2.1.6 18811,30215 2pgdA 482 8.606 a.100.1.1,c.2.1.6 18778,30190 1txgA 335 9.851 a.100.1.6,c.2.1.6 112775,112776 1x0vA 354 9.919 2pgd 482 11.23 1dliA 402 11.71 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2qytA 317 12.52 1d4fA 431 12.97 c.2.1.4,c.23.12.3 30110,31370 2nacA 393 13.58 c.2.1.4,c.23.12.1 30088,31348 2o3jA 481 13.78 1ks9A 291 13.83 a.100.1.7,c.2.1.6 68857,68858 1li4A 432 14.36 c.2.1.4,c.23.12.3 84616,84617 2g76A 335 15.50 2hk9A 275 17.32 1gdhA 320 17.89 c.2.1.4,c.23.12.1 30095,31355 1wwkA 307 19.01 1x7dA 350 19.78 c.2.1.13 114927 2dbqA 334 21.52 2fssA 365 21.91 1ygyA 529 22.39 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2j6iA 364 23.61 2cukA 311 23.82 1v8bA 479 24.22 c.2.1.4,c.23.12.3 113564,113565 1ff9A 450 24.50 c.2.1.3,d.81.1.2 30039,39954 1psdA 409 25.39 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2glxA 332 25.51 1xwfA 431 25.92 c.2.1.4,c.23.12.3 122392,122393 1qp8A 303 26.24 c.2.1.4,c.23.12.1 30092,31352 1lldA 319 26.86 c.2.1.5,d.162.1.1 30177,42144 2eklA 313 27.17 2q4eA 362 28.56 3ceaA 346 28.88 1xeaA 323 29.59 c.2.1.3,d.81.1.5 109572,109573 2d0iA 333 30.10 1qydA 313 30.66 c.2.1.2 96583 2gcgA 330 31.42 6ldhA 329 31.48 c.2.1.5,d.162.1.1 30161,42128 1sc6A 404 31.83 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1nytA 271 31.99 c.2.1.7,c.58.1.5 86417,86418 1mx3A 347 33.59 c.2.1.4,c.23.12.1 79638,79639 2d5cA 263 34.70 1t2dA 322 35.32 c.2.1.5,d.162.1.1 99084,99085 1pzgA 331 35.58 c.2.1.5,d.162.1.1 95425,95426 2o4uX 334 36.20 1vllA 334 37.19 c.2.1.13 108834 1ldg 316 38.42 2i6tA 303 38.87 2pi1A 334 39.73 2eggA 297 40.48 2r6jA 318 40.66 1ez4A 318 41.16 c.2.1.5,d.162.1.1 64917,64918 1obbA 480 41.80 c.2.1.5,d.162.1.2 86760,86761 1uxjA 309 41.80 c.2.1.5,d.162.1.1 108112,108113 1lssA 140 42.49 c.2.1.9 74246 2ewdA 317 43.14 2axqA 467 43.62 1xdwA 331 43.69 1pjcA 361 44.06 c.2.1.4,c.23.12.2 30101,31361 2vhxA 377 44.87 1lehA 364 46.56 c.2.1.7,c.58.1.1 30268,33916 1omoA 322 46.78 c.2.1.13 104017 1ur5A 309 46.83 c.2.1.5,d.162.1.1 99807,99808 1guzA 310 47.39 c.2.1.5,d.162.1.1 65586,65587 2vojA 371 48.42 2hjsA 340 49.72 c.2.1.3,d.81.1.1 136547,136548 1a5zA 319 51.27 c.2.1.5,d.162.1.1 30181,42148 1c1dA 355 51.36 c.2.1.7,c.58.1.1 30270,33918 1j4aA 333 52.30 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 52.33 c.2.1.4,c.23.12.2 77774,77775 1dxy 333 52.46 2o4cA 380 53.69 1qycA 308 54.28 c.2.1.2 96581 2nvwA 479 54.46 c.2.1.3,d.81.1.5 138665,138666 1hyhA 309 54.78 c.2.1.5,d.162.1.1 30150,42117 2a4kA 263 54.97 c.2.1.2 126156 2g17A 337 55.26 c.2.1.3,d.81.1.1 134512,134513 1dxyA 333 56.15 c.2.1.4,c.23.12.1 30094,31354 1u8xX 472 56.90 c.2.1.5,d.162.1.2 107741,107742 2v7pA 310 57.29 1ofgA 381 57.40 c.2.1.3,d.81.1.5 30064,39979 2bmaA 470 57.53 1nvmB 312 58.45 c.2.1.3,d.81.1.1 86251,86252 1h6dA 433 60.58 c.2.1.3,d.81.1.5 65656,65657 2gasA 307 61.09 1x13A 401 61.24 1s6yA 450 61.63 c.2.1.5,d.162.1.2 105314,105315 2dc1A 236 61.78 2b0jA 358 62.39 a.100.1.11,c.2.1.6 127639,127640 1zh8A 340 62.81 c.2.1.3,d.81.1.5 125077,125078 1rydA 387 63.81 c.2.1.3,d.81.1.5 118801,118802 1vjtA 483 64.12 c.2.1.5,d.162.1.2 100833,100834 2ho3A 325 65.04 2nxcA 254 66.74 c.66.1.39 138739 1npyA 271 68.27 c.2.1.7,c.58.1.5 85995,85996 1tltA 319 68.34 c.2.1.3,d.81.1.5 107135,107136 1gpjA 404 70.26 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2aefA 234 70.80 2exxA 306 72.89 1xgkA 352 73.73 c.2.1.2 115286 1q1rA 431 74.46 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2yutA 207 74.64 1x7gA 261 74.78 c.2.1.2 114929 1gypA 358 79.51 c.2.1.3,d.81.1.1 30004,39919 1k6xA 352 79.66 c.2.1.2 68238 3cc8A 230 80.87 3bkwA 243 80.93 2h6eA 344 80.96 1yb1A 272 83.98 c.2.1.2 116599 2fk8A 318 84.89 c.66.1.18 133648 2d8aA 348 86.33 1dssG 333 87.27 c.2.1.3,d.81.1.1 30022,39937 2yyyA 343 87.30 2czcA 334 88.82 d.81.1.1 131044