# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tp5A 119 6.86e-15 b.36.1.1 119305 1be9A 119 7.40e-15 1pdr b.36.1.1 24774 1g9oA 91 1.47e-14 1pdr b.36.1.1 60400 2he4A 90 1.71e-14 2he2A 102 2.17e-14 2ozfA 92 2.83e-14 2ocsA 88 3.67e-14 1i92A 91 4.26e-14 1pdr b.36.1.1 61990 1pdr 99 6.26e-14 1pdr 2jilA 97 1.16e-13 2f5yA 91 1.36e-13 b.36.1.1 133015 1q3oA 109 3.29e-13 b.36.1.1 95700 2jikA 101 3.30e-13 2fcfA 103 4.72e-13 b.36.1.1 133267 2fe5A 94 8.76e-13 b.36.1.1 133323 2opgA 98 9.99e-13 2pktA 91 1.21e-12 2awxA 105 2.51e-12 2egoA 96 2.55e-12 2fneA 117 2.74e-12 b.36.1.1 133813 2i1nA 102 3.71e-12 1n7eA 97 6.99e-12 b.36.1.1 91691 1qavA 90 9.17e-12 1qauA b.36.1.1 24777 1m5zA 91 1.14e-11 b.36.1.1 78676 2q3gA 89 1.42e-11 2uzcA 88 2.25e-11 2qg1A 92 2.78e-11 1ihjA 98 3.40e-11 1pdr b.36.1.1 62382 2iwoA 120 5.03e-11 2pa1A 87 6.88e-11 2iwnA 97 1.01e-10 2q9vA 90 1.03e-10 1qavB 115 1.09e-10 1qauA b.36.1.1 24780 1r6jA 82 1.13e-10 b.36.1.1 97151 1wf7A 103 1.32e-10 b.36.1.1 114577 2i04A 85 1.57e-10 1nf3C 128 1.60e-10 b.36.1.1 85596 1qauA 112 1.64e-10 1qauA b.36.1.1 24779 2gzvA 114 4.03e-10 2h3lA 103 4.94e-10 b.36.1.1 136046 1b8qA 127 6.87e-10 1qauA b.36.1.1 24781 1mfgA 95 8.20e-10 b.36.1.1 79043 1kwaA 88 9.77e-10 1kwaA b.36.1.1 24772 2vphA 100 9.84e-10 1v5lA 103 1.29e-09 b.36.1.1 108378 2reyA 100 3.54e-09 2f0aA 98 4.35e-09 b.36.1.1 132661 1fc6A 388 4.91e-09 1fc6A b.36.1.3 64738 c.14.1.2 64739 1l6oA 95 9.21e-09 b.36.1.1 84534 2eaqA 90 9.66e-09 2h2bA 107 9.95e-09 1x45A 98 1.24e-08 b.36.1.1 121679 3bpuA 88 1.78e-08 2rczA 81 4.56e-08 2qkvA 96 6.01e-07 1lcyA 325 2.47e-06 b.36.1.4 73834 b.47.1.1 73835 2p3wA 112 4.02e-06 1te0A 318 3.76e-05 b.36.1.4 112400 b.47.1.1 112401 1y8tA 324 8.72e-04 b.36.1.4 122763 b.47.1.1 122764 1sotA 320 2.07e-03 b.36.1.4 105852 b.47.1.1 105853 2i6vA 87 8.29e-03 1ky9A 448 6.60e-02 b.36.1.4 73198 b.47.1.1 73199 2dy0A 190 9.73e-02 2j3tD 219 3.60e-01 1ao0A 459 5.27e-01 1ecfB c.61.1.1 34049 d.153.1.1 41816 1db3A 372 7.39e-01 1db3A c.2.1.2 29813 1zn8A 180 9.24e-01 c.61.1.1 125376 1qb7A 236 1.17e+00 1qb7A c.61.1.1 34087 1gph1 465 1.57e+00 1ecfB 1hvyA 288 2.10e+00 1bkpA d.117.1.1 41049 1g2qA 187 2.28e+00 c.61.1.1 65117 2ps1A 226 2.85e+00 2e1zA 415 2.85e+00 1x3mA 415 3.19e+00 c.55.1.2 121664 c.55.1.2 121665 1ypvA 313 3.42e+00 2ogxB 270 3.45e+00 2hb5A 164 3.93e+00 1zm8A 259 5.00e+00 1aiqA 264 5.12e+00 1bkpA d.117.1.1 40967 3bs5B 80 5.72e+00 2qmjA 870 5.82e+00 3bo5A 290 5.93e+00 1jalA 363 6.28e+00 c.37.1.8 84138 d.15.10.2 84139 2g8oA 264 7.65e+00 d.117.1.1 134779 1xx6A 191 7.70e+00 c.37.1.24 116139 g.39.1.14 116140 2g8mA 264 7.77e+00 1fwkA 296 7.80e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 2tscA 264 7.85e+00 1bkpA d.117.1.1 40952 1qqqA 264 8.01e+00 1bkpA d.117.1.1 40931 1c9oA 66 8.39e+00 1mjc b.40.4.5 25325 1axwA 265 8.54e+00 1bkpA d.117.1.1 40938 1ev5A 264 8.54e+00 1bkpA d.117.1.1 40935 2pkpA 170 8.72e+00 1evfA 264 8.86e+00 1bkpA d.117.1.1 40932 2v2gA 233 9.00e+00 2f7fA 494 9.19e+00 c.1.17.1 133088 d.41.2.1 133089 1rypI 222 9.34e+00 d.153.1.4 41877 2bonA 332 9.82e+00 1h72C 296 1.02e+01 d.14.1.5 60712 d.58.26.1 60713 1yb2A 275 1.05e+01 c.66.1.13 122868 2hx6A 153 1.10e+01 1bx4A 345 1.18e+01 1bx4A c.72.1.1 34935 3bkxA 275 1.19e+01 2g17A 337 1.19e+01 c.2.1.3 134512 d.81.1.1 134513 2yv1A 294 1.20e+01 1g7rA 594 1.23e+01 1g7rA b.43.3.1 25716 b.43.3.1 25717 c.20.1.1 31034 c.37.1.8 32149 1sw5A 275 1.25e+01 c.94.1.1 106069 2bh8A 101 1.26e+01 2igqA 285 1.28e+01 1csp 67 1.30e+01 1mjc 1g7sA 594 1.30e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1sw2A 275 1.34e+01 c.94.1.1 106064 1hcz 252 1.42e+01 1hcz 1o88A 353 1.44e+01 b.80.1.1 81178 1w78A 422 1.47e+01 1ti6A 875 1.50e+01 b.52.2.2 106974 c.81.1.1 106975 1fxrA 64 1.51e+01 1fxd d.58.1.4 38993 1yg9A 330 1.51e+01 1zq9A 285 1.54e+01 c.66.1.24 125505 2a9oA 120 1.57e+01 c.23.1.1 126444 1epwA 1290 1.57e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1uc2A 481 1.62e+01 d.261.1.1 99161 2pfuA 99 1.62e+01 1t6t1 118 1.65e+01 1air 353 1.65e+01 1air 2yxyA 115 1.69e+01 1wkvA 389 1.69e+01 c.79.1.1 120989 1mjc 69 1.74e+01 1mjc 1mjcA 69 1.74e+01 b.40.4.5 25319 2d9rA 104 1.77e+01 b.129.2.1 131350 2gakA 391 1.79e+01 2pjzA 263 1.87e+01 1ejeA 192 1.93e+01 1ejeA b.45.1.2 25757 2r6fA 972 2.11e+01 2go9A 161 2.13e+01 1p99A 295 2.16e+01 c.94.1.1 94384 2oz3A 404 2.20e+01 1opr 213 2.25e+01 1opr 2z1cA 75 2.30e+01 2bb3A 221 2.33e+01 c.90.1.1 128257 1gppA 237 2.36e+01 b.86.1.2 76262 1b02A 279 2.40e+01 1bkpA d.117.1.1 41035 1ri9A 102 2.42e+01 b.34.2.1 97506 1yy6A 155 2.46e+01 2fojA 155 2.46e+01 2hjgA 436 2.49e+01 1bkpA 278 2.52e+01 1bkpA d.117.1.1 41029 2oqrA 230 2.52e+01 2id0A 644 2.65e+01 2atfA 200 2.65e+01 b.82.1.19 127290 2b5hA 200 2.65e+01 b.82.1.19 127894 2fa1A 160 2.69e+01 d.190.1.2 133182 1h3gA 601 2.81e+01 b.1.18.2 90594 b.71.1.1 90595 c.1.8.1 90596 1kw4A 89 2.83e+01 a.60.1.2 73077 2bw3A 534 2.92e+01 a.270.1.1 129317 c.55.3.12 129318 2ghpA 292 2.98e+01 d.58.7.1 135184 d.58.7.1 135185 d.58.7.1 135186 1obpA 159 3.05e+01 1obpA b.60.1.1 27092 1ecfB 504 3.06e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 2p1zA 180 3.07e+01 1ecfA 504 3.10e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1f28A 297 3.24e+01 1bkpA d.117.1.1 59608 2v03A 303 3.27e+01 2fiwA 172 3.34e+01 d.108.1.1 133539 2rfiA 285 3.36e+01 2dytA 312 3.37e+01 1cjaA 342 3.38e+01 1cjaA d.144.1.3 41708 1h95A 79 3.40e+01 b.40.4.5 65742 1yphC 131 3.42e+01 2oq1A 254 3.46e+01 d.93.1.1 139220 d.93.1.1 139221 1xocA 520 3.50e+01 c.94.1.1 122201 2dykA 161 3.64e+01 1oroA 213 3.65e+01 1opr c.61.1.1 34093 2z0dB 125 3.67e+01 d.15.1.3 140096 1jnyA 435 3.71e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 2o5nA 319 3.78e+01 2p5iA 288 3.81e+01 1gt1A 159 3.81e+01 b.60.1.1 90515 1rtu 114 3.81e+01 9rnt 1rtuA 114 3.81e+01 d.1.1.4 36139 2f1wA 158 3.83e+01 1jmuB 666 3.93e+01 2yy3A 91 3.98e+01