# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 3.23e-15 1pdr b.36.1.1 60400 1be9A 119 3.43e-15 1pdr b.36.1.1 24774 2he4A 90 4.72e-15 1tp5A 119 4.84e-15 b.36.1.1 119305 2ozfA 92 7.56e-15 2he2A 102 8.13e-15 1i92A 91 8.30e-15 1pdr b.36.1.1 61990 2ocsA 88 8.66e-15 2f5yA 91 3.98e-14 b.36.1.1 133015 2jilA 97 4.18e-14 1q3oA 109 4.26e-14 b.36.1.1 95700 1pdr 99 5.03e-14 1pdr 2pktA 91 1.10e-13 2fcfA 103 2.30e-13 b.36.1.1 133267 2jikA 101 2.91e-13 2fe5A 94 5.03e-13 b.36.1.1 133323 2opgA 98 6.17e-13 2egoA 96 6.99e-13 1qavA 90 9.89e-13 1qauA b.36.1.1 24777 2fneA 117 1.24e-12 b.36.1.1 133813 2awxA 105 1.41e-12 2uzcA 88 1.77e-12 2q3gA 89 1.94e-12 2i1nA 102 1.95e-12 1n7eA 97 2.46e-12 b.36.1.1 91691 1m5zA 91 3.13e-12 b.36.1.1 78676 2qg1A 92 7.91e-12 2iwoA 120 9.74e-12 1ihjA 98 9.81e-12 1pdr b.36.1.1 62382 2pa1A 87 1.58e-11 1qavB 115 2.65e-11 1qauA b.36.1.1 24780 1nf3C 128 3.33e-11 b.36.1.1 85596 1qauA 112 3.34e-11 1qauA b.36.1.1 24779 1r6jA 82 3.37e-11 b.36.1.1 97151 2iwnA 97 3.88e-11 1wf7A 103 4.13e-11 b.36.1.1 114577 2q9vA 90 4.47e-11 2i04A 85 8.70e-11 2h3lA 103 1.38e-10 b.36.1.1 136046 1mfgA 95 1.53e-10 b.36.1.1 79043 1v5lA 103 1.88e-10 b.36.1.1 108378 2vphA 100 1.88e-10 2gzvA 114 2.70e-10 2rczA 81 3.41e-10 1kwaA 88 3.42e-10 1kwaA b.36.1.1 24772 1fc6A 388 8.53e-10 1fc6A b.36.1.3 64738 c.14.1.2 64739 1b8qA 127 1.26e-09 1qauA b.36.1.1 24781 2reyA 100 1.56e-09 3bpuA 88 2.06e-09 2h2bA 107 2.80e-09 2eaqA 90 2.86e-09 1l6oA 95 2.93e-09 b.36.1.1 84534 1x45A 98 6.76e-09 b.36.1.1 121679 2f0aA 98 1.25e-08 b.36.1.1 132661 2qkvA 96 1.20e-07 1lcyA 325 4.51e-07 b.36.1.4 73834 b.47.1.1 73835 2p3wA 112 8.68e-07 1te0A 318 5.46e-06 b.36.1.4 112400 b.47.1.1 112401 1y8tA 324 4.70e-05 b.36.1.4 122763 b.47.1.1 122764 1sotA 320 1.09e-03 b.36.1.4 105852 b.47.1.1 105853 2i6vA 87 3.59e-03 1ky9A 448 3.61e-03 b.36.1.4 73198 b.47.1.1 73199 2dy0A 190 5.62e-02 2j3tD 219 1.35e-01 1db3A 372 4.39e-01 1db3A c.2.1.2 29813 1gph1 465 6.59e-01 1ecfB 1ao0A 459 7.68e-01 1ecfB c.61.1.1 34049 d.153.1.1 41816 2ps1A 226 8.49e-01 1zn8A 180 1.16e+00 c.61.1.1 125376 1g2qA 187 1.47e+00 c.61.1.1 65117 1qb7A 236 1.57e+00 1qb7A c.61.1.1 34087 2pkpA 170 2.47e+00 2z1cA 75 2.58e+00 2hx6A 153 2.69e+00 2de3A 365 2.84e+00 1yg9A 330 4.11e+00 2v03A 303 4.53e+00 2hb5A 164 4.81e+00 1c9oA 66 5.20e+00 1mjc b.40.4.5 25325 1hvyA 288 5.34e+00 1bkpA d.117.1.1 41049 1fwkA 296 5.65e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 2id0A 644 5.68e+00 3bs5B 80 5.73e+00 2qmjA 870 5.87e+00 1t6t1 118 6.10e+00 1nscA 390 6.68e+00 2qwc b.68.1.1 27591 2oz3A 404 6.93e+00 2pn0A 141 7.69e+00 1h72C 296 7.82e+00 d.14.1.5 60712 d.58.26.1 60713 1csp 67 7.86e+00 1mjc 2bh8A 101 8.11e+00 1ti6A 875 8.39e+00 b.52.2.2 106974 c.81.1.1 106975 1gppA 237 8.87e+00 b.86.1.2 76262 1jnyA 435 8.93e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1zm8A 259 1.04e+01 1ypvA 313 1.05e+01 1hcz 252 1.05e+01 1hcz 3bkxA 275 1.16e+01 2d9rA 104 1.16e+01 b.129.2.1 131350 1epwA 1290 1.21e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1ri9A 102 1.24e+01 b.34.2.1 97506 1fxrA 64 1.25e+01 1fxd d.58.1.4 38993 1korA 400 1.28e+01 c.26.2.1 72824 d.210.1.1 72825 2o38A 120 1.33e+01 2p5iA 288 1.35e+01 2in0A 139 1.40e+01 1ev5A 264 1.40e+01 1bkpA d.117.1.1 40935 1qqqA 264 1.40e+01 1bkpA d.117.1.1 40931 3bo5A 290 1.44e+01 2pqgA 265 1.44e+01 2yxyA 115 1.48e+01 2g8oA 264 1.48e+01 d.117.1.1 134779 2g8mA 264 1.49e+01 1jmuB 666 1.51e+01 1aiqA 264 1.54e+01 1bkpA d.117.1.1 40967 1evfA 264 1.57e+01 1bkpA d.117.1.1 40932 1wvhA 134 1.58e+01 b.55.1.2 121341 2pfuA 99 1.58e+01 1x3mA 415 1.58e+01 c.55.1.2 121664 c.55.1.2 121665 2e1zA 415 1.63e+01 1mjhA 162 1.66e+01 1mjhA c.26.2.4 31639 2g17A 337 1.68e+01 c.2.1.3 134512 d.81.1.1 134513 1h3gA 601 1.76e+01 b.1.18.2 90594 b.71.1.1 90595 c.1.8.1 90596 1fxlA 167 1.78e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1cjaA 342 1.79e+01 1cjaA d.144.1.3 41708 1axwA 265 1.82e+01 1bkpA d.117.1.1 40938 1nulA 152 1.82e+01 1nulA c.61.1.1 34011 2tscA 264 1.82e+01 1bkpA d.117.1.1 40952 2ix0A 663 1.90e+01 2go9A 161 1.98e+01 1bx4A 345 2.00e+01 1bx4A c.72.1.1 34935 2gshA 414 2.00e+01 1b9vA 390 2.01e+01 2qwc b.68.1.1 27603 2z80A 353 2.03e+01 1mjc 69 2.03e+01 1mjc 1mjcA 69 2.03e+01 b.40.4.5 25319 1yb2A 275 2.08e+01 c.66.1.13 122868 1zsyA 357 2.10e+01 1vkmA 297 2.13e+01 c.138.1.1 108670 2raaA 204 2.15e+01 1xx6A 191 2.30e+01 c.37.1.24 116139 g.39.1.14 116140 1yloA 348 2.33e+01 b.49.3.1 123659 c.56.5.4 123660 1ejeA 192 2.45e+01 1ejeA b.45.1.2 25757 2e9lA 469 2.48e+01 1opr 213 2.48e+01 1opr 2i5qA 415 2.53e+01 1yy6A 155 2.56e+01 2yv1A 294 2.57e+01 3sxlA 184 2.58e+01 1b7fA d.58.7.1 39173 d.58.7.1 39174 1o54A 277 2.59e+01 c.66.1.13 92482 2fojA 155 2.62e+01 1txvB 440 2.69e+01 b.1.15.1 112784 c.62.1.1 112785 g.16.2.1 112786 1dekA 241 2.71e+01 1dekA c.37.1.1 31842 2ywvA 244 2.73e+01 2f4lA 297 2.77e+01 b.23.3.1 132927 2p5xA 230 2.81e+01 2bkfA 87 2.82e+01 d.15.2.2 128699 2c9wA 169 2.93e+01 2ghpA 292 3.07e+01 d.58.7.1 135184 d.58.7.1 135185 d.58.7.1 135186 2a9oA 120 3.25e+01 c.23.1.1 126444 1g57A 217 3.27e+01 1g57A d.115.1.2 60253 2igqA 285 3.31e+01 1vc3B 97 3.33e+01 1uc2A 481 3.47e+01 d.261.1.1 99161 1q52A 314 3.49e+01 c.14.1.3 95846 1x47A 98 3.63e+01 d.50.1.1 121680 2bjoA 136 3.67e+01 1xrsB 262 3.79e+01 c.23.6.1 115884 d.230.4.1 115885 1air 353 3.82e+01 1air 3b59A 310 3.82e+01 1tr1A 447 3.87e+01 1e70M c.1.8.4 28957 2f1wA 158 3.94e+01