# List of top-scoring protein chains for T0391.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z02A	446	9.78e-09		
2de6A	392	1.10e-08	b.33.1.2,d.129.3.3	131415,131416
1fqtA	112	1.30e-07	b.33.1.1	24441
2i7fA	108	2.25e-07		
2de6D	115	2.55e-07		
2e4qA	109	2.83e-07		
1sjgA	112	6.99e-06	b.33.1.1	105647
2q3wA	111	8.95e-06	b.33.1.1	139813
1uliA	460	1.24e-05	b.33.1.2,d.129.3.3	107921,107922
2ckfA	454	2.18e-05		
2b1xA	470	2.25e-05	b.33.1.2,d.129.3.3	127675,127676
1wqlA	459	6.05e-05	b.33.1.2,d.129.3.3	121170,121171
2gbwA	454	6.13e-05		
2bmoA	447	7.01e-05	b.33.1.2,d.129.3.3	128804,128805
1o7nA	449	8.89e-05	b.33.1.2,d.129.3.3	81162,81163
2hmjA	449	8.89e-05	b.33.1.2,d.129.3.3	136585,136586
2jzaA	130	0.000480		
3c0dA	119	0.000956		
2jo6A	113	0.002076		
1nykA	165	0.005409	b.33.1.1	86408
2qjkC	179	0.04397		
2numA	141	0.04408		
2qjyC	187	0.04593		
1jm1A	204	0.05584	b.33.1.1	71745
2e74D	179	0.06413	b.33.1.1,f.23.12.1	132049,132050
2nukA	141	0.06555		
2qjpC	179	0.06594		
2nvgA	141	0.06862		
1vf5D	179	0.07411	b.33.1.1,f.23.12.1	100583,100584
2nwfA	141	0.07697		
2nveA	141	0.08984		
2nvfA	141	0.1259		
1zrtE	191	0.1434		
1q90C	127	0.1982	b.33.1.1	96242
1rfsA	139	0.2186	b.33.1.1	24434
1kb9E	185	0.7171	b.33.1.1,f.23.12.1	77319,77320
1ppjE	196	1.254	b.33.1.1,f.23.12.1	104260,104261
1bccE	196	1.257	b.33.1.1,f.23.12.1	24431,43699
1g8jB	133	1.290	b.33.1.1	24439
1g8kB	133	1.316	b.33.1.1	24435
1rieA	129	1.457	b.33.1.1	24427
1nkoA	132	42.86	b.1.1.1	85829
2i5nM	323	71.29	f.26.1.1	137067
1zwiC	103	75.31	f.14.1.1	125740
2pkpA	170	80.96		
2atkC	124	83.22	f.14.1.1	127295
1ki9A	192	84.17	c.37.1.1	84404