# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 4.71e-19 2de6A 392 7.03e-19 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 1.41e-17 2ckfA 454 1.56e-17 1uliA 460 4.67e-17 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 6.32e-17 b.33.1.2,d.129.3.3 128804,128805 1fqtA 112 7.96e-17 b.33.1.1 24441 2b1xA 470 8.55e-17 b.33.1.2,d.129.3.3 127675,127676 2e4qA 109 8.63e-17 1o7nA 449 2.14e-16 b.33.1.2,d.129.3.3 81162,81163 1vm9A 111 2.57e-16 b.33.1.1 108886 1sjgA 112 3.43e-16 b.33.1.1 105647 2de6D 115 4.09e-16 1ndoA 449 5.37e-16 b.33.1.2,d.129.3.3 24444,41323 1eg9A 449 6.49e-16 b.33.1.2,d.129.3.3 24443,41322 2q3wA 111 1.41e-15 b.33.1.1 139813 2i7fA 108 2.17e-15 3c0dA 119 4.26e-15 2jo6A 113 1.02e-14 1nykA 165 1.14e-10 b.33.1.1 86408 1rie 129 1.46e-10 1rfs 139 2.04e-10 1rfsA 139 2.53e-10 b.33.1.1 24434 1g8kB 133 2.85e-10 b.33.1.1 24435 1rieA 129 9.50e-10 b.33.1.1 24427 2nvgA 141 1.55e-09 1g8jB 133 4.90e-09 b.33.1.1 24439 1bccE 196 1.46e-08 b.33.1.1,f.23.12.1 24431,43699 2nwfA 141 1.91e-08 2e74D 179 4.21e-08 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 8.43e-08 b.33.1.1,f.23.12.1 104260,104261 1jm1A 204 1.15e-06 b.33.1.1 71745 2d27A 149 8.252 1yiqA 689 9.645 1gaxA 862 12.00 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 2sfaA 191 12.68 b.47.1.1 25815 1g5cA 170 13.94 c.53.2.1 60264 1m9zA 111 14.64 g.7.1.3 78881 1ktzB 122 15.67 g.7.1.3 68868 2ad6A 571 15.71 b.70.1.1 126568 1i6pA 220 18.11 c.53.2.1 61848 1g72A 573 18.77 b.70.1.1 27680 1yr2A 741 19.20 2jz8A 87 19.43 1ddzA 496 24.94 c.53.2.1,c.53.2.1 33372,33373 2d28C 149 26.19 2hf1A 68 30.19 1zo0A 126 30.51 d.108.1.7 125416 2pm7B 297 33.39 2oizA 361 35.25 1ekjA 221 35.96 c.53.2.1 33364 1kloA 162 36.24 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 2hesX 330 40.36 3b2mA 295 41.72 1q67A 231 47.27 b.55.1.7 95960 2dg5A 366 50.53 d.153.1.6 131500 1e44B 96 51.13 b.101.1.1 59220 2g35A 100 52.57 b.55.1.5 134548 2hxrA 238 53.44 2qmjA 870 53.96 1el6A 219 54.23 d.182.1.1 42606 1qksA 567 55.87 a.3.1.2,b.70.2.1 15951,27710 2jrfA 184 58.56 2qmcA 377 59.06 1ixcA 294 62.16 a.4.5.37,c.94.1.1 83764,83765 4aahA 571 62.74 b.70.1.1 27678 2i3oA 516 63.06 d.153.1.6 137027 1ftrA 296 63.66 d.58.33.1,d.58.33.1 39485,39486 2nqoA 376 63.82 d.153.1.6 138473 1l0qA 391 64.26 b.1.3.1,b.69.2.3 77644,77645 1omhA 293 65.98 d.89.1.5 93348 2hx6A 153 66.37 1jpcA 109 66.93 b.78.1.1 27986 6rlxA 24 71.52 2gagC 210 74.22 2veqA 565 74.52 2biiA 424 75.36 1slqA 278 75.54 f.47.1.1 105719 2qggA 182 75.71 2hu5A 582 77.64 b.69.7.2,c.69.1.33 136763,136764 2a5vA 213 77.78 1pmjX 185 78.30 b.18.1.18 104194 2junA 101 80.40 1hxnA 219 81.01 b.66.1.1 27529 3sil 379 81.68 1rydA 387 85.16 c.2.1.3,d.81.1.5 118801,118802 1zgkA 308 86.69 2p35A 259 86.79 1ym3A 215 86.92 1aalA 58 87.54 g.8.1.1 44472 2c2aA 258 88.61 a.30.2.1,d.122.1.3 129662,129663 2b4hA 254 89.32