# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 1.90e-19 2de6A 392 5.31e-19 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 6.96e-18 2ckfA 454 1.02e-17 2bmoA 447 3.06e-17 b.33.1.2,d.129.3.3 128804,128805 2b1xA 470 4.07e-17 b.33.1.2,d.129.3.3 127675,127676 1uliA 460 4.11e-17 b.33.1.2,d.129.3.3 107921,107922 1fqtA 112 6.13e-17 b.33.1.1 24441 2e4qA 109 6.85e-17 1o7nA 449 1.56e-16 b.33.1.2,d.129.3.3 81162,81163 1vm9A 111 1.97e-16 b.33.1.1 108886 1sjgA 112 2.28e-16 b.33.1.1 105647 1ndoA 449 2.98e-16 b.33.1.2,d.129.3.3 24444,41323 2de6D 115 3.61e-16 1eg9A 449 3.68e-16 b.33.1.2,d.129.3.3 24443,41322 2q3wA 111 6.56e-16 b.33.1.1 139813 2i7fA 108 1.96e-15 3c0dA 119 2.98e-15 2jo6A 113 1.53e-14 1nykA 165 1.14e-10 b.33.1.1 86408 1rie 129 1.62e-10 1rfs 139 4.21e-10 1g8kB 133 4.55e-10 b.33.1.1 24435 1rfsA 139 5.02e-10 b.33.1.1 24434 1rieA 129 9.08e-10 b.33.1.1 24427 2nvgA 141 9.98e-10 1g8jB 133 8.92e-09 b.33.1.1 24439 1bccE 196 1.14e-08 b.33.1.1,f.23.12.1 24431,43699 2nwfA 141 1.48e-08 1ppjE 196 6.00e-08 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 9.79e-08 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 1.45e-06 b.33.1.1 71745 2sfaA 191 5.118 b.47.1.1 25815 1kxgA 152 13.38 b.22.1.1 73145 1yiqA 689 13.90 2ad6A 571 14.29 b.70.1.1 126568 1gaxA 862 15.59 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1i6pA 220 15.66 c.53.2.1 61848 2d27A 149 16.71 1m9zA 111 18.40 g.7.1.3 78881 1g5cA 170 18.86 c.53.2.1 60264 1ktzB 122 19.70 g.7.1.3 68868 1g72A 573 21.11 b.70.1.1 27680 1ddzA 496 22.77 c.53.2.1,c.53.2.1 33372,33373 2jz8A 87 24.34 2dg5A 366 25.69 d.153.1.6 131500 2nqoA 376 26.50 d.153.1.6 138473 1yr2A 741 31.57 1zo0A 126 32.02 d.108.1.7 125416 2hesX 330 32.81 2sgaA 181 36.63 b.47.1.1 25808 2jrfA 184 38.07 2gagC 210 39.79 1kloA 162 41.28 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1rvkA 382 41.61 c.1.11.2,d.54.1.1 97928,97929 2qmcA 377 42.33 2d28C 149 42.40 2veqA 565 42.87 2yvtA 260 43.48 1el6A 219 43.62 d.182.1.1 42606 1rj8A 164 44.45 b.22.1.1 97547 1l0qA 391 44.57 b.1.3.1,b.69.2.3 77644,77645 1qksA 567 46.15 a.3.1.2,b.70.2.1 15951,27710 1ekjA 221 49.28 c.53.2.1 33364 2hu5A 582 53.03 b.69.7.2,c.69.1.33 136763,136764 1e44B 96 58.96 b.101.1.1 59220 1pmjX 185 59.07 b.18.1.18 104194 2hxrA 238 60.65 2v89A 82 61.74 1q67A 231 64.11 b.55.1.7 95960 1hxnA 219 64.95 b.66.1.1 27529 2qcuA 501 65.37 1l1jA 239 65.68 b.47.1.1 84516 2oizA 361 66.78 2e0aA 394 66.78 1ixcA 294 66.95 a.4.5.37,c.94.1.1 83764,83765 2hf1A 68 67.70 1kevA 351 68.19 b.35.1.2,c.2.1.1 24749,29765 2a5vA 213 73.58 2pm7B 297 73.72 1ftrA 296 74.14 d.58.33.1,d.58.33.1 39485,39486 2g35A 100 75.24 b.55.1.5 134548 3sil 379 77.58 2qmjA 870 78.29 2sga 181 78.74 1jpcA 109 81.53 b.78.1.1 27986 2qsxA 218 82.10 1ljrA 244 82.24 a.45.1.1,c.47.1.5 17707,33001 1slqA 278 82.94 f.47.1.1 105719 2izrA 330 83.45 2c2aA 258 83.46 a.30.2.1,d.122.1.3 129662,129663 1x31C 206 83.67 1whiA 122 87.21 b.39.1.1 24810 1ylkA 172 87.68 1knmA 130 87.69 b.42.2.1 72781 1rydA 387 89.39 c.2.1.3,d.81.1.5 118801,118802