# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 6.74e-18 2de6A 392 6.78e-18 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 1.90e-16 2ckfA 454 2.13e-16 2e4qA 109 4.51e-16 1fqtA 112 4.52e-16 b.33.1.1 24441 1uliA 460 4.62e-16 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 7.04e-16 b.33.1.2,d.129.3.3 128804,128805 2b1xA 470 1.22e-15 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 2.29e-15 b.33.1.2,d.129.3.3 81162,81163 2de6D 115 2.81e-15 1ndoA 449 4.95e-15 b.33.1.2,d.129.3.3 24444,41323 1vm9A 111 5.54e-15 b.33.1.1 108886 1eg9A 449 5.71e-15 b.33.1.2,d.129.3.3 24443,41322 1sjgA 112 8.47e-15 b.33.1.1 105647 2i7fA 108 1.49e-14 3c0dA 119 3.08e-14 2q3wA 111 3.35e-14 b.33.1.1 139813 2jo6A 113 1.54e-13 1nykA 165 2.86e-10 b.33.1.1 86408 1rie 129 7.07e-10 1rfs 139 8.65e-10 1g8kB 133 1.50e-09 b.33.1.1 24435 1rfsA 139 2.47e-09 b.33.1.1 24434 1rieA 129 4.35e-09 b.33.1.1 24427 2nvgA 141 5.80e-09 1bccE 196 1.79e-08 b.33.1.1,f.23.12.1 24431,43699 1g8jB 133 2.57e-08 b.33.1.1 24439 2nwfA 141 1.04e-07 1ppjE 196 1.41e-07 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 1.63e-07 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 3.55e-06 b.33.1.1 71745 1yiqA 689 1.600 1qksA 567 6.056 a.3.1.2,b.70.2.1 15951,27710 1i6pA 220 6.630 c.53.2.1 61848 1kv9A 668 10.80 a.3.1.6,b.70.1.1 73056,73057 1ddzA 496 11.97 c.53.2.1,c.53.2.1 33372,33373 1el6A 219 12.16 d.182.1.1 42606 2ad6A 571 13.16 b.70.1.1 126568 1g5cA 170 14.73 c.53.2.1 60264 1knmA 130 14.85 b.42.2.1 72781 2gagC 210 14.89 2qmjA 870 15.37 2c2aA 258 17.19 a.30.2.1,d.122.1.3 129662,129663 2jg9C 131 18.87 2sfaA 191 19.71 b.47.1.1 25815 1g72A 573 20.98 b.70.1.1 27680 1xyfA 436 21.37 b.42.2.1,c.1.8.3 25577,28909 1r77A 103 22.32 1l8rA 101 22.48 a.6.1.4 73700 2iwaA 266 22.84 2v89A 82 23.89 2hf1A 68 25.33 3sil 379 25.68 1nu5A 370 26.67 c.1.11.2,d.54.1.1 92183,92184 3cngA 189 27.40 1whiA 122 29.45 b.39.1.1 24810 1kxgA 152 29.67 b.22.1.1 73145 1xl7A 612 31.76 c.43.1.3,c.43.1.3 115438,115439 1ek6A 348 31.91 c.2.1.2 29800 1bxdA 161 32.12 d.122.1.3 41111 2oizA 361 32.59 1w6sA 599 32.79 b.70.1.1 114284 2ot9A 180 33.45 1ftrA 296 34.82 d.58.33.1,d.58.33.1 39485,39486 3bdrA 190 34.84 2g3wA 182 35.00 2agyA 361 36.37 1l0qA 391 36.75 b.1.3.1,b.69.2.3 77644,77645 1whi 122 37.24 4aahA 571 38.69 b.70.1.1 27678 1q7fA 286 38.83 b.68.9.1 96036 1i3kA 348 39.14 c.2.1.2 61595 1n6eA 1071 41.38 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1x31C 206 41.59 1dfcA 493 42.49 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 2yueA 168 44.37 2aaaA 484 45.19 b.71.1.1,c.1.8.1 27777,28764 2biiA 424 45.22 2qmcA 377 46.29 1rkqA 282 47.04 c.108.1.10 97621 1ekjA 221 47.28 c.53.2.1 33364 1a81A 254 47.66 d.93.1.1,d.93.1.1 40507,40508 2dg5A 366 47.87 d.153.1.6 131500 6rlxA 24 48.38 2g35A 100 48.89 b.55.1.5 134548 2iy2A 72 50.17 1mfwA 107 50.39 d.15.11.1 84940 1xsjA 778 51.22 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2nqoA 376 52.60 d.153.1.6 138473 2p5yA 311 52.69 1e0aB 46 53.66 j.65.1.1 46357 1aalA 58 53.85 g.8.1.1 44472 1e44B 96 55.12 b.101.1.1 59220 2gnqA 336 55.17 1zo0A 126 55.27 d.108.1.7 125416 2qcuA 501 56.08 1zgkA 308 56.26 1kay 381 56.63 2fe8A 315 57.38 2evrA 246 57.82 b.34.11.3,d.3.1.16 132440,132441 1h8gA 95 58.24 b.109.1.1 65735 1jpcA 109 59.63 b.78.1.1 27986 1wosA 364 59.79 b.44.2.1,d.250.1.1 109468,109469 2qqhA 334 60.47 2a5vA 213 61.36 2d28C 149 62.21 1bunB 61 63.64 g.8.1.1 44552 2vokA 188 65.00 1gmeA 151 65.39 b.15.1.1 65305 2jz8A 87 67.38 1c7nA 399 67.52 c.67.1.3 34413 1ylkA 172 68.29 2yvrA 50 68.86 1qw1A 121 69.22 1sbxA 106 69.93 a.6.1.4 105414 1pmjX 185 70.96 b.18.1.18 104194 2h14A 317 72.80 1ym3A 215 72.91 1vqoK 132 73.84 b.39.1.1 120372 2nvmA 126 73.86 d.326.1.1 138631 1d3cA 686 73.95 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1ri6A 343 74.20 b.69.11.1 97503 1gvmA 136 74.42 b.109.1.1 70612 2ds0A 130 74.43 2hu5A 582 74.48 b.69.7.2,c.69.1.33 136763,136764 1oqeA 144 75.24 b.22.1.1 87286 2hesX 330 76.07 2fp8A 322 77.20 2p35A 259 78.49 2bklA 695 79.24 2aobA 99 79.89 d.93.1.1 127076 1kthA 58 80.39 g.8.1.1 68863 1kloA 162 82.27 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 2cxiA 348 82.50 1r0mA 375 84.80 c.1.11.2,d.54.1.1 104747,104748 2hdvA 111 85.03 1yr2A 741 85.12 1orvA 728 85.65 b.70.3.1,c.69.1.24 87354,87355 2il5A 171 85.67 1g6xA 58 85.85 g.8.1.1 60320 2ov2I 35 85.96 1f3mA 80 86.59 j.66.1.1 46358 1kb0A 677 86.88 a.3.1.6,b.70.1.1 68378,68379 1ba1 386 88.45 1ejrC 567 89.91 b.92.1.1,c.1.9.2 28420,29042