# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 1.33e-15 2de6A 392 1.72e-15 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 1.81e-14 2ckfA 454 2.18e-14 1fqtA 112 4.72e-14 b.33.1.1 24441 1uliA 460 5.45e-14 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 6.32e-14 b.33.1.2,d.129.3.3 128804,128805 2e4qA 109 6.62e-14 2b1xA 470 7.49e-14 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 1.99e-13 b.33.1.2,d.129.3.3 81162,81163 1vm9A 111 2.55e-13 b.33.1.1 108886 1sjgA 112 2.95e-13 b.33.1.1 105647 2de6D 115 3.73e-13 1ndoA 449 4.17e-13 b.33.1.2,d.129.3.3 24444,41323 1eg9A 449 4.66e-13 b.33.1.2,d.129.3.3 24443,41322 2q3wA 111 1.05e-12 b.33.1.1 139813 2i7fA 108 1.54e-12 3c0dA 119 1.80e-12 2jo6A 113 7.80e-12 1nykA 165 8.06e-09 b.33.1.1 86408 1rfs 139 1.73e-08 1rfsA 139 1.78e-08 b.33.1.1 24434 1rie 129 1.85e-08 1g8kB 133 4.28e-08 b.33.1.1 24435 2nvgA 141 6.50e-08 1rieA 129 1.07e-07 b.33.1.1 24427 1g8jB 133 4.37e-07 b.33.1.1 24439 1bccE 196 5.14e-07 b.33.1.1,f.23.12.1 24431,43699 2nwfA 141 1.13e-06 1ppjE 196 1.94e-06 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 3.23e-06 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 3.23e-05 b.33.1.1 71745 2d27A 149 11.54 1yiqA 689 13.52 2ad6A 571 18.91 b.70.1.1 126568 1jpcA 109 20.62 b.78.1.1 27986 1g72A 573 24.08 b.70.1.1 27680 2d28C 149 24.73 1g5cA 170 25.59 c.53.2.1 60264 1i6pA 220 27.56 c.53.2.1 61848 1yr2A 741 29.81 2oizA 361 30.62 2c2aA 258 31.28 a.30.2.1,d.122.1.3 129662,129663 1bxdA 161 33.22 d.122.1.3 41111 1ddzA 496 34.73 c.53.2.1,c.53.2.1 33372,33373 2veqA 565 35.80 2ot9A 180 37.96 2g3wA 182 38.01 1zo0A 126 38.60 d.108.1.7 125416 2e0aA 394 39.13 1kxgA 152 40.04 b.22.1.1 73145 2sfaA 191 40.83 b.47.1.1 25815 1vr8A 142 40.93 d.312.1.1 120445 2jrfA 184 42.95 2jg9C 131 43.49 1yprA 125 48.98 d.110.1.1 40888 1rvkA 382 50.00 c.1.11.2,d.54.1.1 97928,97929 2qmcA 377 51.07 2nqoA 376 52.19 d.153.1.6 138473 2glcA 342 52.96 2iy2A 72 53.74 1el6A 219 55.13 d.182.1.1 42606 2dg5A 366 55.72 d.153.1.6 131500 1kj1D 109 56.62 b.78.1.1 68639 2aobA 99 58.04 d.93.1.1 127076 3bdrA 190 58.39 2biiA 424 58.52 1qksA 567 60.80 a.3.1.2,b.70.2.1 15951,27710 1whiA 122 62.49 b.39.1.1 24810 1ko9A 345 68.41 a.96.1.3,d.129.1.2 68717,68718 1m9zA 111 69.15 g.7.1.3 78881 1y8oA 419 70.40 1l8rA 101 70.68 a.6.1.4 73700 6rlxA 24 70.76 1ktzB 122 71.24 g.7.1.3 68868 2hf1A 68 71.81 1kloA 162 72.11 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1hxnA 219 72.34 b.66.1.1 27529 1p9kA 79 72.93 d.66.1.6 94392 1ekjA 221 73.87 c.53.2.1 33364 2imiA 221 74.90 2hu5A 582 78.84 b.69.7.2,c.69.1.33 136763,136764 1vqoK 132 80.03 b.39.1.1 120372 1gnwA 211 80.33 a.45.1.1,c.47.1.5 17727,33021 1h91A 180 80.46 b.60.1.1 60805 2qcuA 501 81.66 2dyiA 162 83.81 1whi 122 84.22 3sil 379 84.89 2gl6A 392 86.04 1ym5A 300 87.77 2yvtA 260 88.14 1slqA 278 88.31 f.47.1.1 105719 1ljrA 244 88.54 a.45.1.1,c.47.1.5 17707,33001