# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z02A	446	2.49e-16		
2de6A	392	3.52e-16	b.33.1.2,d.129.3.3	131415,131416
2gbwA	454	4.25e-15		
2ckfA	454	5.12e-15		
1uliA	460	1.29e-14	b.33.1.2,d.129.3.3	107921,107922
2bmoA	447	1.33e-14	b.33.1.2,d.129.3.3	128804,128805
1fqtA	112	1.37e-14	b.33.1.1	24441
2e4qA	109	1.65e-14		
2b1xA	470	1.96e-14	b.33.1.2,d.129.3.3	127675,127676
1o7nA	449	4.29e-14	b.33.1.2,d.129.3.3	81162,81163
1vm9A	111	4.42e-14	b.33.1.1	108886
1sjgA	112	5.55e-14	b.33.1.1	105647
2de6D	115	7.37e-14		
1ndoA	449	9.38e-14	b.33.1.2,d.129.3.3	24444,41323
1eg9A	449	1.02e-13	b.33.1.2,d.129.3.3	24443,41322
2q3wA	111	1.62e-13	b.33.1.1	139813
2i7fA	108	3.38e-13		
3c0dA	119	6.54e-13		
2jo6A	113	1.90e-12		
1nykA	165	2.03e-09	b.33.1.1	86408
1rie	129	3.57e-09		
1rfsA	139	6.30e-09	b.33.1.1	24434
1rfs	139	6.54e-09		
1g8kB	133	8.33e-09	b.33.1.1	24435
2nvgA	141	1.44e-08		
1rieA	129	2.28e-08	b.33.1.1	24427
1g8jB	133	8.72e-08	b.33.1.1	24439
1bccE	196	1.34e-07	b.33.1.1,f.23.12.1	24431,43699
2nwfA	141	2.76e-07		
1ppjE	196	5.12e-07	b.33.1.1,f.23.12.1	104260,104261
2e74D	179	9.12e-07	b.33.1.1,f.23.12.1	132049,132050
1jm1A	204	8.98e-06	b.33.1.1	71745
2d27A	149	17.61		
1yiqA	689	17.99		
1kxgA	152	18.94	b.22.1.1	73145
2veqA	565	21.83		
1m9zA	111	22.41	g.7.1.3	78881
1qksA	567	23.30	a.3.1.2,b.70.2.1	15951,27710
2jrfA	184	24.33		
2oizA	361	26.39		
1ktzB	122	27.25	g.7.1.3	68868
1g5cA	170	28.49	c.53.2.1	60264
1i6pA	220	28.80	c.53.2.1	61848
1ddzA	496	35.14	c.53.2.1,c.53.2.1	33372,33373
2ad6A	571	35.63	b.70.1.1	126568
2hu5A	582	39.04	b.69.7.2,c.69.1.33	136763,136764
2sfaA	191	40.12	b.47.1.1	25815
2dg5A	366	40.51	d.153.1.6	131500
2nqoA	376	40.63	d.153.1.6	138473
2qmcA	377	40.84		
2biiA	424	44.19		
1rvkA	382	44.23	c.1.11.2,d.54.1.1	97928,97929
1g72A	573	45.60	b.70.1.1	27680
2d28C	149	45.72		
1zo0A	126	49.68	d.108.1.7	125416
1ko9A	345	50.12	a.96.1.3,d.129.1.2	68717,68718
1kevA	351	55.97	b.35.1.2,c.2.1.1	24749,29765
2jg9C	131	57.65		
1whiA	122	59.83	b.39.1.1	24810
1h91A	180	61.67	b.60.1.1	60805
2jz8A	87	61.72		
2pm7B	297	64.13		
1jpcA	109	65.78	b.78.1.1	27986
1slqA	278	66.09	f.47.1.1	105719
1kloA	162	69.84	g.3.11.2,g.3.11.2,g.3.11.2	44326,44327,44328
1v37A	177	72.28	c.60.1.1	113497
1yr2A	741	73.27		
6rlxA	24	73.40		
1vqoK	132	74.99	b.39.1.1	120372
1whi	122	75.23		
1knmA	130	79.60	b.42.2.1	72781
2qggA	182	81.25		
3b2mA	295	81.56		
1pmjX	185	84.91	b.18.1.18	104194
2quqA	562	87.51		
2hf1A	68	89.40		
2qmjA	870	89.89