# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z02A	446	1.82e-16		
2de6A	392	2.38e-16	b.33.1.2,d.129.3.3	131415,131416
2gbwA	454	3.44e-15		
2ckfA	454	3.78e-15		
1fqtA	112	9.87e-15	b.33.1.1	24441
1uliA	460	1.03e-14	b.33.1.2,d.129.3.3	107921,107922
2bmoA	447	1.12e-14	b.33.1.2,d.129.3.3	128804,128805
2e4qA	109	1.26e-14		
2b1xA	470	1.57e-14	b.33.1.2,d.129.3.3	127675,127676
1vm9A	111	3.85e-14	b.33.1.1	108886
1o7nA	449	4.00e-14	b.33.1.2,d.129.3.3	81162,81163
1sjgA	112	4.19e-14	b.33.1.1	105647
2de6D	115	5.19e-14		
1ndoA	449	8.44e-14	b.33.1.2,d.129.3.3	24444,41323
1eg9A	449	9.79e-14	b.33.1.2,d.129.3.3	24443,41322
2q3wA	111	1.54e-13	b.33.1.1	139813
2i7fA	108	2.68e-13		
3c0dA	119	5.38e-13		
2jo6A	113	1.51e-12		
1nykA	165	1.71e-09	b.33.1.1	86408
1rie	129	3.51e-09		
1rfs	139	4.94e-09		
1rfsA	139	4.96e-09	b.33.1.1	24434
1g8kB	133	6.17e-09	b.33.1.1	24435
2nvgA	141	1.06e-08		
1rieA	129	1.95e-08	b.33.1.1	24427
1g8jB	133	7.09e-08	b.33.1.1	24439
1bccE	196	1.19e-07	b.33.1.1,f.23.12.1	24431,43699
2nwfA	141	2.06e-07		
1ppjE	196	4.55e-07	b.33.1.1,f.23.12.1	104260,104261
2e74D	179	8.26e-07	b.33.1.1,f.23.12.1	132049,132050
1jm1A	204	7.55e-06	b.33.1.1	71745
2d27A	149	14.55		
1kxgA	152	18.14	b.22.1.1	73145
1yiqA	689	19.35		
1m9zA	111	23.28	g.7.1.3	78881
1i6pA	220	24.81	c.53.2.1	61848
1g5cA	170	26.40	c.53.2.1	60264
2jrfA	184	28.84		
1ktzB	122	29.10	g.7.1.3	68868
2oizA	361	30.74		
1ddzA	496	33.47	c.53.2.1,c.53.2.1	33372,33373
2d28C	149	34.69		
2sfaA	191	35.13	b.47.1.1	25815
2ad6A	571	35.40	b.70.1.1	126568
2biiA	424	35.48		
2dg5A	366	41.05	d.153.1.6	131500
1zo0A	126	41.38	d.108.1.7	125416
2nqoA	376	42.71	d.153.1.6	138473
2qmcA	377	44.66		
1yr2A	741	44.77		
2jz8A	87	45.93		
2hu5A	582	46.05	b.69.7.2,c.69.1.33	136763,136764
2veqA	565	47.66		
1g72A	573	50.98	b.70.1.1	27680
1qksA	567	51.40	a.3.1.2,b.70.2.1	15951,27710
2jg9C	131	52.25		
1bxdA	161	54.55	d.122.1.3	41111
1kevA	351	54.91	b.35.1.2,c.2.1.1	24749,29765
1ko9A	345	56.13	a.96.1.3,d.129.1.2	68717,68718
2hf1A	68	56.25		
1rvkA	382	57.24	c.1.11.2,d.54.1.1	97928,97929
1kloA	162	58.01	g.3.11.2,g.3.11.2,g.3.11.2	44326,44327,44328
1slqA	278	60.39	f.47.1.1	105719
6rlxA	24	66.57		
2pm7B	297	69.04		
3b2mA	295	69.56		
1ixcA	294	72.58	a.4.5.37,c.94.1.1	83764,83765
2qmjA	870	74.79		
2c2aA	258	75.62	a.30.2.1,d.122.1.3	129662,129663
1v37A	177	76.37	c.60.1.1	113497
1jpcA	109	76.92	b.78.1.1	27986
2e0aA	394	78.49		
1knmA	130	81.71	b.42.2.1	72781
2hxrA	238	86.62		
2b4hA	254	88.17		
2v89A	82	89.87