# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z02A	446	1.96e-14		
2de6A	392	2.11e-14	b.33.1.2,d.129.3.3	131415,131416
2gbwA	454	8.44e-14		
2ckfA	454	1.30e-13		
1fqtA	112	1.60e-13	b.33.1.1	24441
2e4qA	109	1.98e-13		
1uliA	460	3.43e-13	b.33.1.2,d.129.3.3	107921,107922
1sjgA	112	4.41e-13	b.33.1.1	105647
2bmoA	447	4.86e-13	b.33.1.2,d.129.3.3	128804,128805
1vm9A	111	5.21e-13	b.33.1.1	108886
2b1xA	470	7.47e-13	b.33.1.2,d.129.3.3	127675,127676
2de6D	115	7.80e-13		
1o7nA	449	1.10e-12	b.33.1.2,d.129.3.3	81162,81163
1ndoA	449	2.36e-12	b.33.1.2,d.129.3.3	24444,41323
1eg9A	449	2.70e-12	b.33.1.2,d.129.3.3	24443,41322
2i7fA	108	2.74e-12		
3c0dA	119	3.51e-12		
2q3wA	111	4.35e-12	b.33.1.1	139813
2jo6A	113	6.13e-12		
1nykA	165	1.54e-08	b.33.1.1	86408
1g8kB	133	3.18e-08	b.33.1.1	24435
1rfs	139	5.01e-08		
1rfsA	139	5.15e-08	b.33.1.1	24434
1rie	129	5.48e-08		
1rieA	129	1.00e-07	b.33.1.1	24427
1g8jB	133	2.77e-07	b.33.1.1	24439
2nvgA	141	3.46e-07		
1bccE	196	5.26e-07	b.33.1.1,f.23.12.1	24431,43699
2nwfA	141	2.47e-06		
2e74D	179	2.72e-06	b.33.1.1,f.23.12.1	132049,132050
1ppjE	196	4.30e-06	b.33.1.1,f.23.12.1	104260,104261
1jm1A	204	3.13e-05	b.33.1.1	71745
2hu5A	582	5.842	b.69.7.2,c.69.1.33	136763,136764
1ddzA	496	19.08	c.53.2.1,c.53.2.1	33372,33373
1qksA	567	19.32	a.3.1.2,b.70.2.1	15951,27710
2qmcA	377	21.60		
2nqoA	376	23.42	d.153.1.6	138473
1kxgA	152	25.36	b.22.1.1	73145
1i6pA	220	30.70	c.53.2.1	61848
2dg5A	366	31.16	d.153.1.6	131500
1g5cA	170	38.63	c.53.2.1	60264
2d27A	149	38.69		
1whiA	122	39.01	b.39.1.1	24810
1zo0A	126	44.86	d.108.1.7	125416
2jz8A	87	45.09		
2v89A	82	49.35		
1oqeA	144	51.20	b.22.1.1	87286
2dyiA	162	51.93		
6rlxA	24	57.58		
2qggA	182	59.91		
1jwwA	80	65.16	d.58.17.1	71919
1kloA	162	68.94	g.3.11.2,g.3.11.2,g.3.11.2	44326,44327,44328
2iwaA	266	72.08		
1m9zA	111	73.24	g.7.1.3	78881
2jrfA	184	75.82		
1ktzB	122	76.94	g.7.1.3	68868
2dqaA	124	77.70		
1whi	122	82.56		
2a5vA	213	83.40		
1ym3A	215	84.56		
1jc4A	148	87.16	d.32.1.4	62863
1hrdA	449	87.83	c.2.1.7,c.58.1.1	30219,33867
1yiqA	689	89.14