# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z02A 446 1.71e-16 2de6A 392 2.66e-16 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 3.14e-15 2ckfA 454 3.37e-15 2e4qA 109 9.35e-15 1uliA 460 9.66e-15 b.33.1.2,d.129.3.3 107921,107922 1fqtA 112 1.04e-14 b.33.1.1 24441 2bmoA 447 1.17e-14 b.33.1.2,d.129.3.3 128804,128805 2b1xA 470 1.46e-14 b.33.1.2,d.129.3.3 127675,127676 1o7nA 449 3.35e-14 b.33.1.2,d.129.3.3 81162,81163 1sjgA 112 4.45e-14 b.33.1.1 105647 1vm9A 111 4.65e-14 b.33.1.1 108886 2de6D 115 6.86e-14 1ndoA 449 7.58e-14 b.33.1.2,d.129.3.3 24444,41323 1eg9A 449 8.16e-14 b.33.1.2,d.129.3.3 24443,41322 2q3wA 111 2.75e-13 b.33.1.1 139813 2i7fA 108 2.84e-13 3c0dA 119 3.32e-13 2jo6A 113 1.25e-12 1nykA 165 3.34e-09 b.33.1.1 86408 1rie 129 4.35e-09 1rfs 139 1.07e-08 1rfsA 139 1.18e-08 b.33.1.1 24434 2nvgA 141 1.40e-08 1g8kB 133 1.66e-08 b.33.1.1 24435 1rieA 129 1.67e-08 b.33.1.1 24427 1bccE 196 1.58e-07 b.33.1.1,f.23.12.1 24431,43699 1g8jB 133 1.88e-07 b.33.1.1 24439 2nwfA 141 2.00e-07 1ppjE 196 4.94e-07 b.33.1.1,f.23.12.1 104260,104261 2e74D 179 1.55e-06 b.33.1.1,f.23.12.1 132049,132050 1jm1A 204 2.34e-05 b.33.1.1 71745 1yiqA 689 10.02 2d27A 149 10.75 2ad6A 571 13.27 b.70.1.1 126568 1jpcA 109 16.02 b.78.1.1 27986 1g72A 573 17.84 b.70.1.1 27680 2sfaA 191 19.54 b.47.1.1 25815 1g5cA 170 21.06 c.53.2.1 60264 1zo0A 126 22.73 d.108.1.7 125416 1i6pA 220 27.00 c.53.2.1 61848 2biiA 424 27.74 2d28C 149 31.11 3bdrA 190 31.57 1kxgA 152 33.57 b.22.1.1 73145 1el6A 219 34.10 d.182.1.1 42606 1ddzA 496 36.11 c.53.2.1,c.53.2.1 33372,33373 2hu5A 582 36.27 b.69.7.2,c.69.1.33 136763,136764 1yr2A 741 36.33 1rvkA 382 37.11 c.1.11.2,d.54.1.1 97928,97929 2jrfA 184 41.91 1qksA 567 42.80 a.3.1.2,b.70.2.1 15951,27710 2ot9A 180 42.88 2qmcA 377 43.83 1m9zA 111 51.42 g.7.1.3 78881 2c2aA 258 51.57 a.30.2.1,d.122.1.3 129662,129663 2nqoA 376 52.31 d.153.1.6 138473 2e0aA 394 53.06 1kj1D 109 53.16 b.78.1.1 68639 1ktzB 122 53.17 g.7.1.3 68868 1vr8A 142 54.14 d.312.1.1 120445 2dg5A 366 54.44 d.153.1.6 131500 1gaxA 862 56.31 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 2veqA 565 57.24 1hxnA 219 59.13 b.66.1.1 27529 4aahA 571 61.21 b.70.1.1 27678 2gagC 210 61.25 2nvmA 126 65.25 d.326.1.1 138631 2g3wA 182 65.40 2dyiA 162 66.21 1bxdA 161 66.31 d.122.1.3 41111 1kloA 162 68.06 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1h91A 180 68.29 b.60.1.1 60805 2jg9C 131 69.30 2iy2A 72 69.34 1ljrA 244 70.26 a.45.1.1,c.47.1.5 17707,33001 2qggA 182 70.44 3b2mA 295 77.33 1r77A 103 77.98 2i3oA 516 78.08 d.153.1.6 137027 1kevA 351 80.46 b.35.1.2,c.2.1.1 24749,29765 1knmA 130 82.22 b.42.2.1 72781 1ekjA 221 82.54 c.53.2.1 33364 1l8rA 101 82.68 a.6.1.4 73700 1k0mA 241 83.25 a.45.1.1,c.47.1.5 67949,67950 1gnwA 211 84.26 a.45.1.1,c.47.1.5 17727,33021 2jz8A 87 84.40 2hf1A 68 84.61 1v7rA 186 86.39 c.51.4.1 100482 2glcA 342 86.88 1nu5A 370 88.24 c.1.11.2,d.54.1.1 92183,92184